MD15G1250400.v1.1

Belongs to the aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
20981037 .. 20984379
3343 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1250400.v1.1.491

Sequence Viewer

Length: 1452 bp
ATGGAAGCAGTGAGAGAAGTGGAGGAAACTTTGTCTAAGCTGAGGCAAACATTCAAAAGTGGAAGAACCAGAAGCGTTGCATGGAGGAAAAAACAACTCAGTGCACTTCTGGAGCTCATGAATGGCAACGAAGAGAAGATTTTCAAAGCTCTCGATCAAGATCTTGGCAAGCACCCAGTTGAATCTTATCGGGATGAAGTTGGAGTTGTGAAAAAATCACTCAACCATAGTTTGAGCAATTTGGAGAAATGGGCTGCTCCTAAAAAGGCACGATTGCCGTTGCTTTTGTTTCCGACGAGCGGGGAGGTGCTGCCGGAACCCCTCGGCGTAGTTCTCATATTTGCATCTTGGAACTTCCCAATATCCTTGGCGTTGGACCCTGTGATCGGAGCAATAGCTGCAGGGAACGTAGTGGTTCTAAAACCTTCAGAGCAAGCACCGGCGTGCTCTTCTTTTCTTGCCAAGACCGTCCCTCAATACTTGGACGGCAAAGCAGTTGAAGTTATTGAGGGTGGGTCAGAAATCAGTGAACTCCTCCTGCAGCAGAAATGGGACAAGATATTCTTTACTGGAAGTGCACAGGTAGGACGGATGGTCATGTCCGCAGCTGCAAAGAATTTAACACCGGTTACACTAGAGCTGGGTGGAAAATGCCCTATTGTCCTGGATTCACTCTCCAATGCTTCAGATTTGAAGGTTGCAGTCAAACGAATAGTAGGAGGGAAGTGGGGACCTTGCAATGGACAGGCATGTATCGGAGTTGATTATATGCTCGTTGAGGAAAAGTTTGCTTCCATGGCGATTGACTTACTGAAGAAAACAATCAAGAGATTTTATAGTGAAAGTCCAAAAGACTCGAAGTGCATAGCTAGAGTCGTAAATAAGCGCCATTTTGAAAGGCTGCGTAATCTTCTCAAAGACCCTCTCGTTGCAGATTCCATTGTATATGGTGGTTCACTTGATGAAGAAAACCTGTTCATAGAGCCAACGATCTTGTTAGATCCTCCGCTCAATGCTGCAATCATGACGGAAGAAATCTTTGGCCCGCTGCTTCCAATAATCACTCTGAAAAAGATTGAAGAAAGCATAGAGTTCATAAATTCAAAGCCAAAACCTCTAGCCATCTACGCCTTCACTAAAGATGAAAACTTGAGGAGACGGATTGTATCCGAAACATCCTCAGGAACTGTGGTTTTCAATGACATCTTGATTCAATTTGTGTGTGATTCTATACCGTTTGGCGGTGTTGGTCAGAGCGGCTTTGGAAGGTACCATGGCAAGTATTCCTTCGATACTTTCAGCCACGAGAAAGCGGTTATGCGAGCAAACTTCATCATCGAATTTGGGTCTAGATATCCTCCATGGAATGACTTCAAAGATAAATTTATCAGATTCGCCTACAATTTCGATTACATTAGTCTTGCTTTGCTCCTCCTGGGACTTAAGAGGTAG

Protein Analysis

484

Amino Acids

53.72

Weight (kDa)

8.77

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 5 - 439 3.4e-82 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1269
AccB1I GGYRCC 1 cut(s) 1269
AccBSI CCGCTC 3 cut(s) 300, 1009, 1257
AciI CCGC 7 cut(s) 300, 603, 1007, 1046, 1242, 1257, 1313
AclWI GGATC 1 cut(s) 995
AcsI RAATTY 4 cut(s) 616, 1099, 1340, 1382
AcuI CTGAAG 3 cut(s) 411, 669, 833
AfaI GTAC 1 cut(s) 1271
AfiI CCNNNNNNNGG 4 cut(s) 299, 386, 740, 1241
AflII CTTAAG 1 cut(s) 1442
AgeI ACCGGT 1 cut(s) 625
AhdI GACNNNNNGTC 1 cut(s) 593
AjnI CCWGG 2 cut(s) 663, 1434
AjuI GAANNNNNNNTTGG 2 cut(s) 1023, 1055
AleI CACNNNNGTG 1 cut(s) 442
AluBI AGCT 7 cut(s) 40, 115, 149, 398, 608, 640, 869
AluI AGCT 7 cut(s) 40, 115, 149, 398, 608, 640, 869
Alw21I GWGCWC 4 cut(s) 106, 117, 449, 580
Alw26I GTCTC 1 cut(s) 1150
Alw44I GTGCAC 2 cut(s) 102, 576
AlwI GGATC 1 cut(s) 995
AlwNI CAGNNNCTG 1 cut(s) 1187
AoxI GGCC 1 cut(s) 1042
ApaLI GTGCAC 2 cut(s) 102, 576
ApeKI GCWGC 9 cut(s) 254, 310, 398, 541, 605, 608, 901, 1016, 1048
ApoI RAATTY 4 cut(s) 616, 1099, 1340, 1382
AsiGI ACCGGT 1 cut(s) 625
Asp700I GAANNNNTTC 2 cut(s) 140, 1370
Asp718I GGTACC 1 cut(s) 1269
AspLEI GCGC 1 cut(s) 888
AspS9I GGNCC 3 cut(s) 376, 731, 1043
AvaII GGWCC 2 cut(s) 376, 731
AxyI CCTNAGG 1 cut(s) 1180
BaeGI GKGCMC 2 cut(s) 106, 580
BanI GGYRCC 1 cut(s) 1269
BanII GRGCYC 1 cut(s) 117
BauI CACGAG 1 cut(s) 1304
Bbv12I GWGCWC 4 cut(s) 106, 117, 449, 580
BbvCI CCTCAGC 1 cut(s) 41
BbvI GCAGC 9 cut(s) 241, 297, 385, 553, 595, 617, 888, 1003, 1035
BccI CCATC 2 cut(s) 586, 1130
BceAI ACGGC 2 cut(s) 262, 502
BciT130I CCWGG 2 cut(s) 665, 1436
BciVI GTATCC 1 cut(s) 1177
BcoDI GTCTC 1 cut(s) 1150
BfaI CTAG 4 cut(s) 635, 870, 1118, 1350
BfmI CTRYAG 2 cut(s) 399, 539
BfoI RGCGCY 1 cut(s) 889
BfrI CTTAAG 1 cut(s) 1442
BfuI GTATCC 1 cut(s) 1177
BglII AGATCT 1 cut(s) 160
Bme1390I CCNGG 2 cut(s) 665, 1436
Bme18I GGWCC 2 cut(s) 376, 731
BmeRI GACNNNNNGTC 1 cut(s) 593
BmgT120I GGNCC 3 cut(s) 376, 731, 1043
BmiI GGNNCC 4 cut(s) 318, 378, 732, 1271
BmrFI CCNGG 2 cut(s) 665, 1436
BmrI ACTGGG 1 cut(s) 170
BmsI GCATC 1 cut(s) 353
BmuI ACTGGG 1 cut(s) 170
BpmI CTGGAG 1 cut(s) 131
Bpu10I CCTNAGC 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 1171
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 6 cut(s) 322, 366, 795, 1273, 1361, 1435
BsaWI WCCGGW 1 cut(s) 625
Bsc4I CCNNNNNNNGG 4 cut(s) 299, 386, 740, 1241
Bse118I RCCGGY 2 cut(s) 439, 625
Bse1I ACTGG 2 cut(s) 176, 574
Bse21I CCTNAGG 1 cut(s) 1180
Bse3DI GCAATG 1 cut(s) 745
Bse8I GATNNNNATC 1 cut(s) 159
BseBI CCWGG 2 cut(s) 665, 1436
BseDI CCNNGG 6 cut(s) 322, 366, 795, 1273, 1361, 1435
BseGI GGATG 3 cut(s) 199, 597, 1175
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 4 cut(s) 299, 386, 740, 1241
BseMI GCAATG 1 cut(s) 745
BseMII CTCAG 3 cut(s) 32, 112, 1194
BseNI ACTGG 2 cut(s) 176, 574
BseRI GAGGAG 3 cut(s) 524, 1168, 1421
BseSI GKGCMC 2 cut(s) 106, 580
BseXI GCAGC 9 cut(s) 241, 297, 385, 553, 595, 617, 888, 1003, 1035
BseYI CCCAGC 1 cut(s) 640
BshFI GGCC 1 cut(s) 1044
BshNI GGYRCC 1 cut(s) 1269
BshTI ACCGGT 1 cut(s) 625
BsiHKAI GWGCWC 4 cut(s) 106, 117, 449, 580
BsiSI CCGG 3 cut(s) 314, 440, 626
BslFI GGGAC 3 cut(s) 455, 566, 744
BslI CCNNNNNNNGG 4 cut(s) 299, 386, 740, 1241
BsmAI GTCTC 1 cut(s) 1150
BsmBI CGTCTC 1 cut(s) 1150
BsmFI GGGAC 3 cut(s) 455, 566, 744
BsnI GGCC 1 cut(s) 1044
Bsp1286I GDGCHC 4 cut(s) 106, 117, 449, 580
Bsp143I GATC 5 cut(s) 154, 160, 384, 990, 1000
Bsp19I CCATGG 3 cut(s) 795, 1273, 1361
BspACI CCGC 7 cut(s) 300, 603, 1007, 1046, 1242, 1257, 1313
BspANI GGCC 1 cut(s) 1044
BspCNI CTCAG 3 cut(s) 33, 111, 1193
BspHI TCATGA 2 cut(s) 117, 1023
BspLI GGNNCC 4 cut(s) 318, 378, 732, 1271
BspMAI CTGCAG 2 cut(s) 403, 543
BspPI GGATC 1 cut(s) 995
BspQI GCTCTTC 1 cut(s) 454
BspT107I GGYRCC 1 cut(s) 1269
BspTI CTTAAG 1 cut(s) 1442
BsrBI CCGCTC 3 cut(s) 300, 1009, 1257
BsrDI GCAATG 1 cut(s) 745
BsrFI RCCGGY 2 cut(s) 439, 625
BsrI ACTGG 2 cut(s) 176, 574
BssAI RCCGGY 2 cut(s) 439, 625
BssECI CCNNGG 6 cut(s) 322, 366, 795, 1273, 1361, 1435
BssMI GATC 5 cut(s) 154, 160, 384, 990, 1000
BssSI CACGAG 1 cut(s) 1304
BssT1I CCWWGG 4 cut(s) 366, 795, 1273, 1361
Bst2BI CACGAG 1 cut(s) 1304
Bst2UI CCWGG 2 cut(s) 665, 1436
Bst4CI ACNGT 3 cut(s) 469, 1189, 1236
Bst6I CTCTTC 2 cut(s) 126, 454
BstAFI CTTAAG 1 cut(s) 1442
BstAPI GCANNNNNTGC 1 cut(s) 398
BstC8I GCNNGC 5 cut(s) 170, 435, 445, 1046, 1323
BstDEI CTNAG 4 cut(s) 36, 41, 98, 1180
BstDSI CCRYGG 3 cut(s) 795, 1273, 1361
BstF5I GGATG 3 cut(s) 199, 597, 1175
BstH2I RGCGCY 1 cut(s) 889
BstHHI GCGC 1 cut(s) 888
BstKTI GATC 5 cut(s) 157, 163, 387, 993, 1003
BstMAI GTCTC 1 cut(s) 1150
BstMBI GATC 5 cut(s) 154, 160, 384, 990, 1000
BstMWI GCNNNNNNNGC 3 cut(s) 398, 797, 1127
BstNI CCWGG 2 cut(s) 665, 1436
BstNSI RCATGY 1 cut(s) 753
BstSCI CCNGG 2 cut(s) 663, 1434
BstSFI CTRYAG 2 cut(s) 399, 539
BstSLI GKGCMC 2 cut(s) 106, 580
BstV1I GCAGC 9 cut(s) 241, 297, 385, 553, 595, 617, 888, 1003, 1035
BstX2I RGATCY 2 cut(s) 160, 1000
BstYI RGATCY 2 cut(s) 160, 1000
Bsu36I CCTNAGG 1 cut(s) 1180
BsuI GTATCC 1 cut(s) 1177
BsuRI GGCC 1 cut(s) 1044
BtgI CCRYGG 3 cut(s) 795, 1273, 1361
BtsCI GGATG 3 cut(s) 199, 597, 1175
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 3 cut(s) 15, 106, 532
Cac8I GCNNGC 5 cut(s) 170, 435, 445, 1046, 1323
CaiI CAGNNNCTG 1 cut(s) 1187
CciI TCATGA 2 cut(s) 117, 1023
CfoI GCGC 1 cut(s) 888
Cfr10I RCCGGY 2 cut(s) 439, 625
Cfr13I GGNCC 3 cut(s) 376, 731, 1043
Csp6I GTAC 1 cut(s) 1270
CspAI ACCGGT 1 cut(s) 625
CviAII CATG 8 cut(s) 81, 118, 598, 750, 796, 1024, 1274, 1362
CviQI GTAC 1 cut(s) 1270
DdeI CTNAG 4 cut(s) 36, 41, 98, 1180
DpnI GATC 5 cut(s) 156, 162, 386, 992, 1002
DpnII GATC 5 cut(s) 154, 160, 384, 990, 1000
DriI GACNNNNNGTC 1 cut(s) 593
Eam1104I CTCTTC 2 cut(s) 126, 454
Eam1105I GACNNNNNGTC 1 cut(s) 593
EarI CTCTTC 2 cut(s) 126, 454
Ecl136II GAGCTC 1 cut(s) 115
Eco130I CCWWGG 4 cut(s) 366, 795, 1273, 1361
Eco24I GRGCYC 1 cut(s) 117
Eco32I GATATC 1 cut(s) 1355
Eco47I GGWCC 2 cut(s) 376, 731
Eco53kI GAGCTC 1 cut(s) 115
Eco57I CTGAAG 3 cut(s) 411, 669, 833
Eco81I CCTNAGG 1 cut(s) 1180
EcoICRI GAGCTC 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 731
EcoRII CCWGG 2 cut(s) 663, 1434
EcoRV GATATC 1 cut(s) 1355
EcoT14I CCWWGG 4 cut(s) 366, 795, 1273, 1361
EcoT38I GRGCYC 1 cut(s) 117
ErhI CCWWGG 4 cut(s) 366, 795, 1273, 1361
Esp3I CGTCTC 1 cut(s) 1150
FaeI CATG 8 cut(s) 84, 121, 601, 753, 799, 1027, 1277, 1365
FalI AAGNNNNNCTT 4 cut(s) 548, 580, 1271, 1303
FaqI GGGAC 3 cut(s) 455, 566, 744
FatI CATG 8 cut(s) 80, 117, 597, 749, 795, 1023, 1273, 1361
FauI CCCGC 2 cut(s) 293, 1053
FokI GGATG 3 cut(s) 206, 604, 1162
FriOI GRGCYC 1 cut(s) 117
FspBI CTAG 4 cut(s) 635, 870, 1118, 1350
GlaI GCGC 1 cut(s) 887
GsaI CCCAGC 1 cut(s) 644
GsuI CTGGAG 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 889
HaeIII GGCC 1 cut(s) 1044
HapII CCGG 3 cut(s) 314, 440, 626
HhaI GCGC 1 cut(s) 888
Hin1II CATG 8 cut(s) 84, 121, 601, 753, 799, 1027, 1277, 1365
Hin6I GCGC 1 cut(s) 886
HinP1I GCGC 1 cut(s) 886
HinfI GANTC 8 cut(s) 182, 668, 854, 873, 935, 1210, 1226, 1392
HpaII CCGG 3 cut(s) 314, 440, 626
Hpy166II GTNNAC 4 cut(s) 104, 530, 578, 956
Hpy8I GTNNAC 4 cut(s) 104, 530, 578, 956
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 5 cut(s) 435, 688, 1141, 1260, 1297
HpyCH4III ACNGT 3 cut(s) 469, 1189, 1236
HpyCH4IV ACGT 1 cut(s) 408
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 797, 1127
HpyF3I CTNAG 4 cut(s) 36, 41, 98, 1180
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 8 cut(s) 84, 121, 601, 753, 799, 1027, 1277, 1365
HspAI GCGC 1 cut(s) 886
KpnI GGTACC 1 cut(s) 1273
Kzo9I GATC 5 cut(s) 154, 160, 384, 990, 1000
LguI GCTCTTC 1 cut(s) 454
LmnI GCTCC 4 cut(s) 112, 262, 389, 1434
Lsp1109I GCAGC 9 cut(s) 241, 297, 385, 553, 595, 617, 888, 1003, 1035
LweI GCATC 1 cut(s) 353
MaeI CTAG 4 cut(s) 635, 870, 1118, 1350
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 628
MalI GATC 5 cut(s) 156, 162, 386, 992, 1002
MbiI CCGCTC 3 cut(s) 300, 1009, 1257
MboI GATC 5 cut(s) 154, 160, 384, 990, 1000
MboII GAAGA 9 cut(s) 75, 143, 148, 441, 826, 902, 977, 1043, 1091
MflI RGATCY 2 cut(s) 160, 1000
MhlI GDGCHC 4 cut(s) 106, 117, 449, 580
MluCI AATT 7 cut(s) 238, 616, 1099, 1214, 1340, 1382, 1402
MlyI GAGTC 2 cut(s) 848, 882
MmeI TCCRAC 3 cut(s) 181, 317, 354
MroXI GAANNNNTTC 2 cut(s) 140, 1370
MseI TTAA 2 cut(s) 620, 1443
MslI CAYNNNNRTG 1 cut(s) 442
MspA1I CMGCKG 2 cut(s) 608, 1048
MspCI CTTAAG 1 cut(s) 1442
MspI CCGG 3 cut(s) 314, 440, 626
MspR9I CCNGG 2 cut(s) 665, 1436
MvaI CCWGG 2 cut(s) 665, 1436
MwoI GCNNNNNNNGC 3 cut(s) 398, 797, 1127
NcoI CCATGG 3 cut(s) 795, 1273, 1361
NdeII GATC 5 cut(s) 154, 160, 384, 990, 1000
NlaIII CATG 8 cut(s) 84, 121, 601, 753, 799, 1027, 1277, 1365
NlaIV GGNNCC 4 cut(s) 318, 378, 732, 1271
NmeAIII GCCGAG 1 cut(s) 303
NspI RCATGY 1 cut(s) 753
OliI CACNNNNGTG 1 cut(s) 442
PagI TCATGA 2 cut(s) 117, 1023
PciSI GCTCTTC 1 cut(s) 454
PdmI GAANNNNTTC 2 cut(s) 140, 1370
PfeI GAWTC 6 cut(s) 182, 668, 935, 1210, 1226, 1392
PfoI TCCNGGA 1 cut(s) 663
PinAI ACCGGT 1 cut(s) 625
PleI GAGTC 2 cut(s) 848, 881
PpsI GAGTC 2 cut(s) 848, 881
PpuMI RGGWCCY 1 cut(s) 731
Psp124BI GAGCTC 1 cut(s) 117
Psp5II RGGWCCY 1 cut(s) 731
Psp6I CCWGG 2 cut(s) 663, 1434
PspFI CCCAGC 1 cut(s) 640
PspGI CCWGG 2 cut(s) 663, 1434
PspN4I GGNNCC 4 cut(s) 318, 378, 732, 1271
PspPI GGNCC 3 cut(s) 376, 731, 1043
PspPPI RGGWCCY 1 cut(s) 731
PstI CTGCAG 2 cut(s) 403, 543
PstNI CAGNNNCTG 1 cut(s) 1187
PsuI RGATCY 2 cut(s) 160, 1000
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 1 cut(s) 1271
RsaNI GTAC 1 cut(s) 1270
RseI CAYNNNNRTG 1 cut(s) 442
SacI GAGCTC 1 cut(s) 117
SapI GCTCTTC 1 cut(s) 454
SaqAI TTAA 2 cut(s) 620, 1443
Sau3AI GATC 5 cut(s) 154, 160, 384, 990, 1000
Sau96I GGNCC 3 cut(s) 376, 731, 1043
SchI GAGTC 2 cut(s) 848, 882
ScrFI CCNGG 2 cut(s) 665, 1436
SduI GDGCHC 4 cut(s) 106, 117, 449, 580
SfaNI GCATC 1 cut(s) 353
SfcI CTRYAG 2 cut(s) 399, 539
SgrAI CRCCGGYG 1 cut(s) 439
SinI GGWCC 2 cut(s) 376, 731
SmiMI CAYNNNNRTG 1 cut(s) 442
SmlI CTYRAG 2 cut(s) 1150, 1442
SmoI CTYRAG 2 cut(s) 1150, 1442
Sse9I AATT 7 cut(s) 238, 616, 1099, 1214, 1340, 1382, 1402
SsiI CCGC 7 cut(s) 300, 603, 1007, 1046, 1242, 1257, 1313
SspMI CTAG 4 cut(s) 635, 870, 1118, 1350
SstI GAGCTC 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 663, 1434
StyI CCWWGG 4 cut(s) 366, 795, 1273, 1361
TaaI ACNGT 3 cut(s) 469, 1189, 1236
TaiI ACGT 1 cut(s) 411
TaqI TCGA 5 cut(s) 153, 857, 1290, 1338, 1407
TasI AATT 7 cut(s) 238, 616, 1099, 1214, 1340, 1382, 1402
TauI GCSGC 1 cut(s) 1260
TfiI GAWTC 6 cut(s) 182, 668, 935, 1210, 1226, 1392
Tru1I TTAA 2 cut(s) 620, 1443
Tru9I TTAA 2 cut(s) 620, 1443
TscAI CASTG 3 cut(s) 15, 106, 532
TseI GCWGC 9 cut(s) 254, 310, 398, 541, 605, 608, 901, 1016, 1048
TspDTI ATGAA 7 cut(s) 134, 210, 967, 978, 1084, 1158, 1321
TspGWI ACGGA 3 cut(s) 604, 1043, 1174
TspRI CASTG 3 cut(s) 15, 106, 532
Vha464I CTTAAG 1 cut(s) 1442
VneI GTGCAC 2 cut(s) 102, 576
VpaK11BI GGWCC 2 cut(s) 376, 731
XapI RAATTY 4 cut(s) 616, 1099, 1340, 1382
XbaI TCTAGA 1 cut(s) 1349
XceI RCATGY 1 cut(s) 753
XmnI GAANNNNTTC 2 cut(s) 140, 1370
XspI CTAG 4 cut(s) 635, 870, 1118, 1350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.