Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000164.1

Orthogroup ID

OG0006056

Physical Location & Seq

Genomic Coordinates Reverse (-)

52413 .. 54815

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000164.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgacagaaatagtagaagaaacactgtgtgagctgaggcaaaccttcaagagtggtaaaaccaaaagtgttgcatggaggaaaacccaactcaatgctcttcgtcatctcgtcaaagataatgaggaaaaggtctttgaagcactctatcaagatcttggcaagcacccgattgaatcttacagggatgagattggagttgtggtgaaaacaatcaatcatactttgagcaatttagacaaatgggtggcacctacaaagggtaaattaccgttgcttttttttccgacaaggggagaggtgctgccggaaccactcggcgtagttctcatctttgcatcttggaacttcccaatatctttggctttggatcctgtaataggagcaatagctgccgggaatgcagtggttctaaaaccttcagaccaagcaccggcatgctcttctttaattgctaaaaccatacctgaatacatggaccctaaagccgtaagaatcatcgagggtggaccacaaatttgtgaaaaactcctgcagcataagtgggataagatattctttactgctgccaagcatttaacacctgttacactagagctgggtggaaaatgccctgtcatccttgattcactctccaatccttcggatttaaaggtcgcgatcaaaagaattgtaagtggaaagtgggggccttgcagtgggcaggcatgtataggaatagattatatgctcgttgaggaaaagcttgctcctactgtgatcgaattgttaaagaaaacaatgaatagattttatactgaaagcccaaaagatgcaaattgcacggccagaattgtaaataagcaccactttcagagagtgcagaatctcctcaaagaccctcttgttgaagcttccattgtacatggtggttcactggatgaagaaaacctgttcatcgagccaataatcttgttagatccaccacttgatgctgcaatcatgaatgaagaaatctttggcccactactcccagtaatcactgtgagaattgatatactgcttttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

349

Amino Acids

38.7

Weight (kDa)

6.27

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36250
fragaria_vesca	FvH4_1g12280 FvH4_1g12280
malus_domestica	MD02G1136600.v1.1 MD15G1250400.v1.1
prunus_persica	Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1
pyrus_communis	pycom02g10790
rosa_chinensis	RchiOBHm_Chr2g0100081 RchiOBHm_Chr2g0100111
rosa_laevigata	RLG00000016934
rosa_multiflora	Rmu_sc0000164.1_g000004 Rmu_sc0000164.1_g000009
rosa_roxburghii	Rroxscaffold_2G00142570
rosa_rugosa	Rorug02G0085500
rosa_samantha	Rh2AG134300 Rh2BG138000 Rh2CG139300 Rh2CG139600 Rh2DG139600 Rh2DG139900
rosa_wichuraiana	Rw2G010470 Rw2G010490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	250
AccII	CGCG	1 cut(s)	659
AclWI	GGATC	3 cut(s)	365, 378, 953
AcoI	YGGCCR	1 cut(s)	825
AcsI	RAATTY	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	405
AdeI	CACNNNGTG	1 cut(s)	29
AfaI	GTAC	1 cut(s)	903
AfiI	CCNNNNNNNGG	5 cut(s)	260, 293, 380, 433, 698
AgsI	TTSAA	4 cut(s)	49, 140, 176, 890
AjuI	GAANNNNNNNTTGG	2 cut(s)	981, 1013
AluBI	AGCT	5 cut(s)	34, 392, 598, 745, 893
AluI	AGCT	5 cut(s)	34, 392, 598, 745, 893
AlwI	GGATC	3 cut(s)	365, 378, 953
AoxI	GGCC	3 cut(s)	689, 825, 1000
ApeKI	GCWGC	5 cut(s)	304, 392, 535, 566, 974
ApoI	RAATTY	1 cut(s)	516
ArsI	GACNNNNNNTTYG	2 cut(s)	501, 533
AspS9I	GGNCC	4 cut(s)	478, 509, 689, 1001
AsuC2I	CCSGG	1 cut(s)	397
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	2 cut(s)	478, 509
BamHI	GGATCC	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	250
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	5 cut(s)	291, 379, 547, 553, 961
BceAI	ACGGC	2 cut(s)	473, 840
BcnI	CCSGG	1 cut(s)	397
BfaI	CTAG	1 cut(s)	593
BfmI	CTRYAG	1 cut(s)	533
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	5 cut(s)	305, 393, 536, 567, 975
BlsI	GCNGC	5 cut(s)	306, 394, 537, 568, 976
Bme1390I	CCNGG	1 cut(s)	397
Bme18I	GGWCC	2 cut(s)	478, 509
BmgT120I	GGNCC	4 cut(s)	478, 509, 689, 1001
BmiI	GGNNCC	5 cut(s)	252, 312, 372, 480, 690
BmrFI	CCNGG	1 cut(s)	397
BmrI	ACTGGG	1 cut(s)	1007
BmsI	GCATC	3 cut(s)	347, 802, 961
BmuI	ACTGGG	1 cut(s)	1007
Bpu10I	CCTNAGC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	5 cut(s)	260, 293, 380, 433, 698
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	2 cut(s)	921, 1013
BseGI	GGATG	3 cut(s)	193, 618, 925
BseLI	CCNNNNNNNGG	5 cut(s)	260, 293, 380, 433, 698
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	2 cut(s)	921, 1013
BseRI	GAGGAG	1 cut(s)	860
BseXI	GCAGC	5 cut(s)	291, 379, 547, 553, 961
BseYI	CCCAGC	1 cut(s)	598
BsgI	GTGCAG	1 cut(s)	881
Bsh1236I	CGCG	1 cut(s)	659
BshFI	GGCC	3 cut(s)	691, 827, 1002
BshNI	GGYRCC	1 cut(s)	250
BsiSI	CCGG	3 cut(s)	308, 396, 434
BslI	CCNNNNNNNGG	5 cut(s)	260, 293, 380, 433, 698
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	3 cut(s)	691, 827, 1002
Bsp1407I	TGTACA	1 cut(s)	901
Bsp143I	GATC	5 cut(s)	154, 370, 660, 759, 958
Bsp68I	TCGCGA	1 cut(s)	659
BspANI	GGCC	3 cut(s)	691, 827, 1002
BspCNI	CTCAG	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	659
BspHI	TCATGA	1 cut(s)	981
BspLI	GGNNCC	5 cut(s)	252, 312, 372, 480, 690
BspMAI	CTGCAG	1 cut(s)	537
BspPI	GGATC	3 cut(s)	365, 378, 953
BspQI	GCTCTTC	2 cut(s)	105, 448
BspT107I	GGYRCC	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	433
BsrGI	TGTACA	1 cut(s)	901
BsrI	ACTGG	2 cut(s)	921, 1013
BssAI	RCCGGY	1 cut(s)	433
BssMI	GATC	5 cut(s)	154, 370, 660, 759, 958
Bst4CI	ACNGT	4 cut(s)	27, 273, 757, 1024
Bst6I	CTCTTC	2 cut(s)	105, 448
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstAUI	TGTACA	1 cut(s)	901
BstC8I	GCNNGC	4 cut(s)	164, 439, 705, 747
BstDEI	CTNAG	1 cut(s)	35
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	3 cut(s)	193, 618, 925
BstFNI	CGCG	1 cut(s)	659
BstKTI	GATC	5 cut(s)	157, 373, 663, 762, 961
BstMBI	GATC	5 cut(s)	154, 370, 660, 759, 958
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 401
BstNSI	RCATGY	2 cut(s)	441, 711
BstSCI	CCNGG	1 cut(s)	395
BstSFI	CTRYAG	1 cut(s)	533
BstUI	CGCG	1 cut(s)	659
BstV1I	GCAGC	5 cut(s)	291, 379, 547, 553, 961
BstX2I	RGATCY	3 cut(s)	154, 370, 958
BstYI	RGATCY	3 cut(s)	154, 370, 958
BsuRI	GGCC	3 cut(s)	691, 827, 1002
BtsCI	GGATG	3 cut(s)	193, 618, 925
BtsI	GCAGTG	2 cut(s)	411, 703
BtsIMutI	CAGTG	5 cut(s)	23, 411, 703, 914, 1020
BtuMI	TCGCGA	1 cut(s)	659
Cac8I	GCNNGC	4 cut(s)	164, 439, 705, 747
CciI	TCATGA	1 cut(s)	981
Cfr10I	RCCGGY	1 cut(s)	433
Cfr13I	GGNCC	4 cut(s)	478, 509, 689, 1001
Csp6I	GTAC	1 cut(s)	902
CviAII	CATG	6 cut(s)	75, 438, 475, 708, 905, 982
CviQI	GTAC	1 cut(s)	902
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	5 cut(s)	156, 372, 662, 761, 960
DpnII	GATC	5 cut(s)	154, 370, 660, 759, 958
DraI	TTTAAA	1 cut(s)	651
DraIII	CACNNNGTG	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	825
Eam1104I	CTCTTC	2 cut(s)	105, 448
EarI	CTCTTC	2 cut(s)	105, 448
Eco47I	GGWCC	2 cut(s)	478, 509
Eco57I	CTGAAG	1 cut(s)	405
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	689
FaeI	CATG	6 cut(s)	78, 441, 478, 711, 908, 985
FalI	AAGNNNNNCTT	6 cut(s)	542, 574, 833, 865, 867, 899
FatI	CATG	6 cut(s)	74, 437, 474, 707, 904, 981
Fnu4HI	GCNGC	5 cut(s)	305, 393, 536, 567, 975
FokI	GGATG	3 cut(s)	200, 605, 932
Fsp4HI	GCNGC	5 cut(s)	305, 393, 536, 567, 975
FspBI	CTAG	1 cut(s)	593
GluI	GCNGC	5 cut(s)	305, 393, 536, 567, 975
GsaI	CCCAGC	1 cut(s)	602
HaeIII	GGCC	3 cut(s)	691, 827, 1002
HapII	CCGG	3 cut(s)	308, 396, 434
Hin1II	CATG	6 cut(s)	78, 441, 478, 711, 908, 985
HindIII	AAGCTT	2 cut(s)	743, 891
HinfI	GANTC	4 cut(s)	176, 495, 626, 865
HpaII	CCGG	3 cut(s)	308, 396, 434
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	2 cut(s)	509, 914
Hpy188I	TCNGA	4 cut(s)	288, 424, 646, 855
Hpy188III	TCNNGA	4 cut(s)	49, 152, 658, 982
Hpy8I	GTNNAC	2 cut(s)	509, 914
HpyAV	CCTTC	3 cut(s)	55, 429, 651
HpyCH4III	ACNGT	4 cut(s)	27, 273, 757, 1024
HpyCH4V	TGCA	9 cut(s)	74, 338, 404, 535, 696, 815, 822, 862, 977
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 401
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	6 cut(s)	78, 441, 478, 711, 908, 985
Kzo9I	GATC	5 cut(s)	154, 370, 660, 759, 958
LguI	GCTCTTC	2 cut(s)	105, 448
LmnI	GCTCC	2 cut(s)	383, 754
Lsp1109I	GCAGC	5 cut(s)	291, 379, 547, 553, 961
LweI	GCATC	3 cut(s)	347, 802, 961
MaeI	CTAG	1 cut(s)	593
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	5 cut(s)	156, 372, 662, 761, 960
MboI	GATC	5 cut(s)	154, 370, 660, 759, 958
MboII	GAAGA	5 cut(s)	29, 92, 435, 935, 1001
MflI	RGATCY	3 cut(s)	154, 370, 958
MluCI	AATT	9 cut(s)	232, 266, 450, 516, 669, 764, 817, 831, 1029
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	8 cut(s)	30, 72, 118, 292, 496, 730, 881, 891
MseI	TTAA	4 cut(s)	449, 578, 650, 770
MslI	CAYNNNNRTG	1 cut(s)	436
MspI	CCGG	3 cut(s)	308, 396, 434
MspR9I	CCNGG	1 cut(s)	397
Mva1269I	GAATGC	1 cut(s)	406
MvnI	CGCG	1 cut(s)	659
MwoI	GCNNNNNNNGC	2 cut(s)	392, 401
NciI	CCSGG	1 cut(s)	397
NdeII	GATC	5 cut(s)	154, 370, 660, 759, 958
NlaIII	CATG	6 cut(s)	78, 441, 478, 711, 908, 985
NlaIV	GGNNCC	5 cut(s)	252, 312, 372, 480, 690
NmeAIII	GCCGAG	1 cut(s)	297
NruI	TCGCGA	1 cut(s)	659
NspI	RCATGY	2 cut(s)	441, 711
PaeI	GCATGC	1 cut(s)	441
PagI	TCATGA	1 cut(s)	981
PciSI	GCTCTTC	2 cut(s)	105, 448
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	4 cut(s)	176, 495, 626, 865
PkrI	GCNGC	5 cut(s)	306, 394, 537, 568, 976
PspFI	CCCAGC	1 cut(s)	598
PspN4I	GGNNCC	5 cut(s)	252, 312, 372, 480, 690
PspPI	GGNCC	4 cut(s)	478, 509, 689, 1001
PstI	CTGCAG	1 cut(s)	537
PsuI	RGATCY	3 cut(s)	154, 370, 958
RruI	TCGCGA	1 cut(s)	659
RsaI	GTAC	1 cut(s)	903
RsaNI	GTAC	1 cut(s)	902
RseI	CAYNNNNRTG	1 cut(s)	436
SapI	GCTCTTC	2 cut(s)	105, 448
SaqAI	TTAA	4 cut(s)	449, 578, 650, 770
SatI	GCNGC	5 cut(s)	305, 393, 536, 567, 975
Sau3AI	GATC	5 cut(s)	154, 370, 660, 759, 958
Sau96I	GGNCC	4 cut(s)	478, 509, 689, 1001
ScrFI	CCNGG	1 cut(s)	397
SfaNI	GCATC	3 cut(s)	347, 802, 961
SfcI	CTRYAG	1 cut(s)	533
SinI	GGWCC	2 cut(s)	478, 509
SmiMI	CAYNNNNRTG	1 cut(s)	436
SphI	GCATGC	1 cut(s)	441
Sse9I	AATT	9 cut(s)	232, 266, 450, 516, 669, 764, 817, 831, 1029
SspMI	CTAG	1 cut(s)	593
StyD4I	CCNGG	1 cut(s)	395
TaaI	ACNGT	4 cut(s)	27, 273, 757, 1024
TaqI	TCGA	3 cut(s)	501, 762, 939
TasI	AATT	9 cut(s)	232, 266, 450, 516, 669, 764, 817, 831, 1029
TatI	WGTACW	1 cut(s)	901
TfiI	GAWTC	4 cut(s)	176, 495, 626, 865
Tru1I	TTAA	4 cut(s)	449, 578, 650, 770
Tru9I	TTAA	4 cut(s)	449, 578, 650, 770
TscAI	CASTG	5 cut(s)	30, 411, 703, 921, 1027
TseI	GCWGC	5 cut(s)	304, 392, 535, 566, 974
TspDTI	ATGAA	5 cut(s)	797, 925, 936, 998, 1002
TspRI	CASTG	5 cut(s)	30, 411, 703, 921, 1027
VpaK11BI	GGWCC	2 cut(s)	478, 509
XagI	CCTNNNNNAGG	1 cut(s)	378
XapI	RAATTY	1 cut(s)	516
XceI	RCATGY	2 cut(s)	441, 711
XspI	CTAG	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.