Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000164.1

Orthogroup ID

OG0006056

Physical Location & Seq

Genomic Coordinates Reverse (-)

24131 .. 27055

Gene Structure 2925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000164.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

atgacagaaatagtagaagaaacactgtgtgagctgaggcaaaccttccagagtggtaaaaccaaaagtgttgcatggaggaaaacccaactcaatgctcttcgtcatctcgtcaaagataatgaggaaaaggtctttgaagcactctatcaagatcttggcaagcacccgattgaatcttacagggatgagattggagttgtggtgaaaacaatcaatcatactttgagcaatttagacaaatgggtggcacctacaaagggtaaattaccgttgcttgtttttccgagaaggggagaggtgctgccggaaccactcggcgtagttctcatctttgcatcttggaacttcccaatatctttggctttggatcctgtaataggagcaatagctgcagggaatgcagtggttctaaaaccttcagaccaagcgccggcatgctcttctttaattgctaaaaccatacctgaatacatggaccctaaagccgtaagaatcatcgagggtggaccacaaatttgtgaaaaactcctgcagcataagtgggataagatattctttactgctgccaagcatttaacacctgttacactagagctgggtggaaaatgccctgtcatccttgattcactctccaatccttcggatttaaaggtggcgatcaaaagaattgtaagtggaaagtgggggccttgcagtgggcaggcatgtataggaatagattatatgctcgttgaggaaaagcttgctcctactgtgatcgaattgttaaagaaaacgatgaagagattttatactgaaagcccaaaagatgcaaattgcatggccagaattgtaaataagcaccactttcagagagtgcagaatctcctcaaagaccctcttgttgaagcttccattgtacatggtggttcactggatgaagaaaacctgttcatcgagccaataatcttgttagatccaccacttgatgctgcaatcatgaatgaagaaatctttggcccactactcccagtaatcactttgaagaacattcaagaaagcattgaattcataaatgaaaggccaaaacctctaaccatttacgccttcaccaaagatgaaaactttaagaagaaaattttatcagaaacatcctcagggagcgtgactttcaatgacgtcttgattcaatttctctgtgatgctctaccctttggtggtgttggttccagtggatttgggaggtaccatgggaagttttcttttgatactttcagccatgagaaagcagttctgcgaacaggcttcttccctgaacttgaggctagatatcctccttggaataacttcaaaatgacatttatcaaacttgcctatgaccttgactactttggactatttctgctccttgttggacttaaaaggtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

470

Amino Acids

52.69

Weight (kDa)

7.13

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36250
fragaria_vesca	FvH4_1g12280 FvH4_1g12280
malus_domestica	MD02G1136600.v1.1 MD15G1250400.v1.1
prunus_persica	Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1
pyrus_communis	pycom02g10790
rosa_chinensis	RchiOBHm_Chr2g0100081 RchiOBHm_Chr2g0100111
rosa_laevigata	RLG00000016934
rosa_multiflora	Rmu_sc0000164.1_g000004 Rmu_sc0000164.1_g000009
rosa_roxburghii	Rroxscaffold_2G00142570
rosa_rugosa	Rorug02G0085500
rosa_samantha	Rh2AG134300 Rh2BG138000 Rh2CG139300 Rh2CG139600 Rh2DG139600 Rh2DG139900
rosa_wichuraiana	Rw2G010470 Rw2G010490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1164
Acc65I	GGTACC	1 cut(s)	1227
AccB1I	GGYRCC	2 cut(s)	250, 1227
AclWI	GGATC	3 cut(s)	365, 378, 953
AcoI	YGGCCR	1 cut(s)	825
AcsI	RAATTY	3 cut(s)	516, 1049, 1119
AcuI	CTGAAG	1 cut(s)	405
AcyI	GRCGYC	1 cut(s)	1161
AdeI	CACNNNGTG	1 cut(s)	29
AfaI	GTAC	2 cut(s)	903, 1229
AfiI	CCNNNNNNNGG	6 cut(s)	260, 293, 380, 433, 698, 1199
AgsI	TTSAA	9 cut(s)	140, 176, 890, 1027, 1037, 1049, 1156, 1172, 1333
AjuI	GAANNNNNNNTTGG	2 cut(s)	981, 1013
AluBI	AGCT	5 cut(s)	34, 392, 598, 745, 893
AluI	AGCT	5 cut(s)	34, 392, 598, 745, 893
AlwI	GGATC	3 cut(s)	365, 378, 953
AoxI	GGCC	4 cut(s)	689, 825, 1000, 1064
ApeKI	GCWGC	5 cut(s)	304, 392, 535, 566, 974
ApoI	RAATTY	3 cut(s)	516, 1049, 1119
ArsI	GACNNNNNNTTYG	2 cut(s)	501, 533
Asp700I	GAANNNNTTC	1 cut(s)	1328
Asp718I	GGTACC	1 cut(s)	1227
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	4 cut(s)	478, 509, 689, 1001
AsuHPI	GGTGA	2 cut(s)	217, 1084
AvaII	GGWCC	2 cut(s)	478, 509
AxyI	CCTNAGG	1 cut(s)	1138
BalI	TGGCCA	1 cut(s)	827
BamHI	GGATCC	1 cut(s)	370
BanI	GGYRCC	2 cut(s)	250, 1227
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	5 cut(s)	291, 379, 547, 553, 961
BceAI	ACGGC	1 cut(s)	473
BfaI	CTAG	2 cut(s)	593, 1308
BfmI	CTRYAG	2 cut(s)	393, 533
BfoI	RGCGCY	1 cut(s)	434
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	5 cut(s)	305, 393, 536, 567, 975
BlsI	GCNGC	5 cut(s)	306, 394, 537, 568, 976
Bme18I	GGWCC	2 cut(s)	478, 509
BmgT120I	GGNCC	4 cut(s)	478, 509, 689, 1001
BmiI	GGNNCC	7 cut(s)	252, 312, 372, 480, 690, 1210, 1229
BmrI	ACTGGG	1 cut(s)	1007
BmsI	GCATC	4 cut(s)	347, 802, 961, 1174
BmuI	ACTGGG	1 cut(s)	1007
Bpu10I	CCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	1322
BsaHI	GRCGYC	1 cut(s)	1161
BsaJI	CCNNGG	2 cut(s)	1231, 1319
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	6 cut(s)	260, 293, 380, 433, 698, 1199
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	3 cut(s)	921, 1013, 1212
Bse21I	CCTNAGG	1 cut(s)	1138
BseDI	CCNNGG	2 cut(s)	1231, 1319
BseGI	GGATG	4 cut(s)	193, 618, 925, 1133
BseLI	CCNNNNNNNGG	6 cut(s)	260, 293, 380, 433, 698, 1199
BseMII	CTCAG	2 cut(s)	26, 1152
BseNI	ACTGG	3 cut(s)	921, 1013, 1212
BseRI	GAGGAG	1 cut(s)	860
BseXI	GCAGC	5 cut(s)	291, 379, 547, 553, 961
BseYI	CCCAGC	1 cut(s)	598
BsgI	GTGCAG	1 cut(s)	881
BshFI	GGCC	4 cut(s)	691, 827, 1002, 1066
BshNI	GGYRCC	2 cut(s)	250, 1227
BsiSI	CCGG	2 cut(s)	308, 434
BslI	CCNNNNNNNGG	6 cut(s)	260, 293, 380, 433, 698, 1199
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	4 cut(s)	691, 827, 1002, 1066
Bsp1407I	TGTACA	1 cut(s)	901
Bsp143I	GATC	5 cut(s)	154, 370, 660, 759, 958
Bsp19I	CCATGG	1 cut(s)	1231
BspANI	GGCC	4 cut(s)	691, 827, 1002, 1066
BspCNI	CTCAG	2 cut(s)	27, 1151
BspHI	TCATGA	1 cut(s)	981
BspLI	GGNNCC	7 cut(s)	252, 312, 372, 480, 690, 1210, 1229
BspMAI	CTGCAG	2 cut(s)	397, 537
BspPI	GGATC	3 cut(s)	365, 378, 953
BspQI	GCTCTTC	2 cut(s)	105, 448
BspT107I	GGYRCC	2 cut(s)	250, 1227
BsrFI	RCCGGY	1 cut(s)	433
BsrGI	TGTACA	1 cut(s)	901
BsrI	ACTGG	3 cut(s)	921, 1013, 1212
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	2 cut(s)	1231, 1319
BssMI	GATC	5 cut(s)	154, 370, 660, 759, 958
BssNI	GRCGYC	1 cut(s)	1161
BssT1I	CCWWGG	2 cut(s)	1231, 1319
Bst4CI	ACNGT	3 cut(s)	27, 273, 757
Bst6I	CTCTTC	3 cut(s)	105, 448, 779
BstACI	GRCGYC	1 cut(s)	1161
BstAPI	GCANNNNNTGC	2 cut(s)	392, 401
BstAUI	TGTACA	1 cut(s)	901
BstC8I	GCNNGC	5 cut(s)	164, 435, 439, 705, 747
BstDEI	CTNAG	2 cut(s)	35, 1138
BstDSI	CCRYGG	1 cut(s)	1231
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	4 cut(s)	193, 618, 925, 1133
BstH2I	RGCGCY	1 cut(s)	434
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	5 cut(s)	157, 373, 663, 762, 961
BstMBI	GATC	5 cut(s)	154, 370, 660, 759, 958
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 401
BstNSI	RCATGY	2 cut(s)	441, 711
BstSFI	CTRYAG	2 cut(s)	393, 533
BstV1I	GCAGC	5 cut(s)	291, 379, 547, 553, 961
BstX2I	RGATCY	3 cut(s)	154, 370, 958
BstYI	RGATCY	3 cut(s)	154, 370, 958
Bsu36I	CCTNAGG	1 cut(s)	1138
BsuRI	GGCC	4 cut(s)	691, 827, 1002, 1066
BtgI	CCRYGG	1 cut(s)	1231
BtsCI	GGATG	4 cut(s)	193, 618, 925, 1133
BtsI	GCAGTG	2 cut(s)	411, 703
BtsIMutI	CAGTG	5 cut(s)	23, 411, 703, 914, 1219
Cac8I	GCNNGC	5 cut(s)	164, 435, 439, 705, 747
CciI	TCATGA	1 cut(s)	981
CfoI	GCGC	1 cut(s)	433
Cfr10I	RCCGGY	1 cut(s)	433
Cfr13I	GGNCC	4 cut(s)	478, 509, 689, 1001
Csp6I	GTAC	2 cut(s)	902, 1228
CviAII	CATG	9 cut(s)	75, 438, 475, 708, 823, 905, 982, 1232, 1262
CviQI	GTAC	2 cut(s)	902, 1228
DdeI	CTNAG	2 cut(s)	35, 1138
DpnI	GATC	5 cut(s)	156, 372, 662, 761, 960
DpnII	GATC	5 cut(s)	154, 370, 660, 759, 958
DraI	TTTAAA	1 cut(s)	651
DraIII	CACNNNGTG	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	825
Eam1104I	CTCTTC	3 cut(s)	105, 448, 779
EarI	CTCTTC	3 cut(s)	105, 448, 779
Eco130I	CCWWGG	2 cut(s)	1231, 1319
Eco32I	GATATC	1 cut(s)	1313
Eco47I	GGWCC	2 cut(s)	478, 509
Eco57I	CTGAAG	1 cut(s)	405
Eco81I	CCTNAGG	1 cut(s)	1138
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	689
EcoRI	GAATTC	1 cut(s)	1049
EcoRV	GATATC	1 cut(s)	1313
EcoT14I	CCWWGG	2 cut(s)	1231, 1319
ErhI	CCWWGG	2 cut(s)	1231, 1319
FaeI	CATG	9 cut(s)	78, 441, 478, 711, 826, 908, 985, 1235, 1265
FalI	AAGNNNNNCTT	6 cut(s)	542, 574, 833, 865, 867, 899
FatI	CATG	9 cut(s)	74, 437, 474, 707, 822, 904, 981, 1231, 1261
Fnu4HI	GCNGC	5 cut(s)	305, 393, 536, 567, 975
FokI	GGATG	4 cut(s)	200, 605, 932, 1120
Fsp4HI	GCNGC	5 cut(s)	305, 393, 536, 567, 975
FspBI	CTAG	2 cut(s)	593, 1308
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	5 cut(s)	305, 393, 536, 567, 975
GsaI	CCCAGC	1 cut(s)	602
HaeII	RGCGCY	1 cut(s)	434
HaeIII	GGCC	4 cut(s)	691, 827, 1002, 1066
HapII	CCGG	2 cut(s)	308, 434
HhaI	GCGC	1 cut(s)	433
Hin1I	GRCGYC	1 cut(s)	1161
Hin1II	CATG	9 cut(s)	78, 441, 478, 711, 826, 908, 985, 1235, 1265
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HindIII	AAGCTT	2 cut(s)	743, 891
HinfI	GANTC	5 cut(s)	176, 495, 626, 865, 1168
HpaII	CCGG	2 cut(s)	308, 434
HphI	GGTGA	2 cut(s)	217, 1084
Hpy166II	GTNNAC	2 cut(s)	509, 914
Hpy188I	TCNGA	5 cut(s)	288, 424, 646, 855, 1129
Hpy188III	TCNNGA	5 cut(s)	49, 152, 982, 1037, 1165
Hpy8I	GTNNAC	2 cut(s)	509, 914
HpyAV	CCTTC	5 cut(s)	55, 285, 429, 651, 1099
HpyCH4III	ACNGT	3 cut(s)	27, 273, 757
HpyCH4IV	ACGT	1 cut(s)	1161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 401
HpyF3I	CTNAG	2 cut(s)	35, 1138
HpySE526I	ACGT	1 cut(s)	1161
Hsp92I	GRCGYC	1 cut(s)	1161
Hsp92II	CATG	9 cut(s)	78, 441, 478, 711, 826, 908, 985, 1235, 1265
HspAI	GCGC	1 cut(s)	431
KpnI	GGTACC	1 cut(s)	1231
KroI	GCCGGC	1 cut(s)	433
KroNI	GCCGGC	1 cut(s)	435
Kzo9I	GATC	5 cut(s)	154, 370, 660, 759, 958
LguI	GCTCTTC	2 cut(s)	105, 448
LmnI	GCTCC	1 cut(s)	383
Lsp1109I	GCAGC	5 cut(s)	291, 379, 547, 553, 961
LweI	GCATC	4 cut(s)	347, 802, 961, 1174
MaeI	CTAG	2 cut(s)	593, 1308
MaeII	ACGT	1 cut(s)	1161
MaeIII	GTNAC	2 cut(s)	586, 1147
MalI	GATC	5 cut(s)	156, 372, 662, 761, 960
MboI	GATC	5 cut(s)	154, 370, 660, 759, 958
MboII	GAAGA	9 cut(s)	29, 92, 435, 796, 935, 1001, 1039, 1126, 1282
MflI	RGATCY	3 cut(s)	154, 370, 958
MlsI	TGGCCA	1 cut(s)	827
MluNI	TGGCCA	1 cut(s)	827
MmeI	TCCRAC	1 cut(s)	1375
Mox20I	TGGCCA	1 cut(s)	827
MroNI	GCCGGC	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	1328
MscI	TGGCCA	1 cut(s)	827
MseI	TTAA	6 cut(s)	449, 578, 650, 770, 1110, 1401
Msp20I	TGGCCA	1 cut(s)	827
MspI	CCGG	2 cut(s)	308, 434
Mva1269I	GAATGC	1 cut(s)	406
MwoI	GCNNNNNNNGC	2 cut(s)	392, 401
NaeI	GCCGGC	1 cut(s)	435
NcoI	CCATGG	1 cut(s)	1231
NdeII	GATC	5 cut(s)	154, 370, 660, 759, 958
NgoMIV	GCCGGC	1 cut(s)	433
NlaIII	CATG	9 cut(s)	78, 441, 478, 711, 826, 908, 985, 1235, 1265
NlaIV	GGNNCC	7 cut(s)	252, 312, 372, 480, 690, 1210, 1229
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	1147
NspI	RCATGY	2 cut(s)	441, 711
PaeI	GCATGC	1 cut(s)	441
PagI	TCATGA	1 cut(s)	981
PciSI	GCTCTTC	2 cut(s)	105, 448
PctI	GAATGC	1 cut(s)	406
PdiI	GCCGGC	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	1328
PfeI	GAWTC	5 cut(s)	176, 495, 626, 865, 1168
PkrI	GCNGC	5 cut(s)	306, 394, 537, 568, 976
PspFI	CCCAGC	1 cut(s)	598
PspN4I	GGNNCC	7 cut(s)	252, 312, 372, 480, 690, 1210, 1229
PspPI	GGNCC	4 cut(s)	478, 509, 689, 1001
PstI	CTGCAG	2 cut(s)	397, 537
PsuI	RGATCY	3 cut(s)	154, 370, 958
RsaI	GTAC	2 cut(s)	903, 1229
RsaNI	GTAC	2 cut(s)	902, 1228
SapI	GCTCTTC	2 cut(s)	105, 448
SaqAI	TTAA	6 cut(s)	449, 578, 650, 770, 1110, 1401
SatI	GCNGC	5 cut(s)	305, 393, 536, 567, 975
Sau3AI	GATC	5 cut(s)	154, 370, 660, 759, 958
Sau96I	GGNCC	4 cut(s)	478, 509, 689, 1001
SfaNI	GCATC	4 cut(s)	347, 802, 961, 1174
SfcI	CTRYAG	2 cut(s)	393, 533
SinI	GGWCC	2 cut(s)	478, 509
SmlI	CTYRAG	1 cut(s)	1301
SmoI	CTYRAG	1 cut(s)	1301
SphI	GCATGC	1 cut(s)	441
SspMI	CTAG	2 cut(s)	593, 1308
StyI	CCWWGG	2 cut(s)	1231, 1319
TaaI	ACNGT	3 cut(s)	27, 273, 757
TaiI	ACGT	1 cut(s)	1164
TaqI	TCGA	3 cut(s)	501, 762, 939
TatI	WGTACW	1 cut(s)	901
TfiI	GAWTC	5 cut(s)	176, 495, 626, 865, 1168
Tru1I	TTAA	6 cut(s)	449, 578, 650, 770, 1110, 1401
Tru9I	TTAA	6 cut(s)	449, 578, 650, 770, 1110, 1401
TscAI	CASTG	5 cut(s)	30, 411, 703, 921, 1219
TseFI	GTSAC	1 cut(s)	1147
TseI	GCWGC	5 cut(s)	304, 392, 535, 566, 974
Tsp45I	GTSAC	1 cut(s)	1147
TspDTI	ATGAA	8 cut(s)	797, 925, 936, 998, 1002, 1042, 1074, 1116
TspRI	CASTG	5 cut(s)	30, 411, 703, 921, 1219
VpaK11BI	GGWCC	2 cut(s)	478, 509
XagI	CCTNNNNNAGG	1 cut(s)	378
XapI	RAATTY	3 cut(s)	516, 1049, 1119
XceI	RCATGY	2 cut(s)	441, 711
XmnI	GAANNNNTTC	1 cut(s)	1328
XspI	CTAG	2 cut(s)	593, 1308
ZraI	GACGTC	1 cut(s)	1162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.