Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006056

Physical Location & Seq

Genomic Coordinates Forward (+)

12174655 .. 12179261

Gene Structure 4607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG134300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGACAGAAATAGTAGAAGAAACACTGTGTGAGCTGAGGCAAACCTTCAAGAGTGGTAAAACCAAAAGTGTTGCATGGAGGAAAACCCAACTCAATGCTCTTCGTCAGCTCATCAAAGATAATGAGGAAAAGGTCTTTGAAGCACTCTATCAAGATCTTGCCAAGCACCCGATTGAATCTTACAGGGATGAGATTGGAGTTGTGGTGAAAACAATCAATTATACTTTGAGCAATTTAGACAAATGGGTGGCACCTACAAAGGGTAAATTACCGTTGCTTTTTTTTCCGACAAGGGGAGAGGTGCTGCCGGAACCACTCGGCGTAGTTCTCATCTTTGCATCTTGGAACTTCCCAATATCTTTGGCTTTGGATCCTGTAATAGGAGCAATAGCTGCAGGGAATGCAGTGGTTCTAAAACCTTCAGACCAAGCACCGGCATGCTCTTCTTTAATTGCTAAAACCATACCTCAATACATGGACCCTAAAGCCGTAAGAATCATCGAGGGTGGACCACAAATTTGTGAAAAACTCCTGCAGCATAAGTGGGATAAGATATTCTTTACTGGAAGTCCACAGGTAGGGCGCGTTGTCATGACTGCAGCTGCCAAGCATTTAACACCTGTTACACTAGAGCTGGGTGGAAAATGCCCTGTCATCCTTGATTCACTCTCCAATCCTTCGGATTTAAAGGTGGCGATCAAAAGAATTGTAAGTGGAAAGTGGGGACCTTGCAGTGGGCAGGCATGTATAGGAATAGATTATATGCTCGTTGAGGAAAAGCTTGCTCCTACTGTGATCGAATTGTTAAAGAAAACGATGAAGAGATTTTATACTGAAAGCCCAAAAGATGCAAATTGCATGGCCAGAATTGTAAATAAGCACCACTTTCAGAGAGTGCAGAATCTCCTCAAAGACCCTCTTGTTGAAGCTTCCATTGTACATGGTGGTTCACTGGATGAAGAAAACCTGTTCATTGAGCCAATAATCTTGTTAGATCCACCACTTGATGCTGCAATCATGAATGAAGAAATCTTTGGCCCACTACTTCCAGTAATCACTGTGAGAATTGATATACTGCTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

361

Amino Acids

39.97

Weight (kDa)

7.0

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	5 - 355	4.9e-65	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36250
fragaria_vesca	FvH4_1g12280 FvH4_1g12280
malus_domestica	MD02G1136600.v1.1 MD15G1250400.v1.1
prunus_persica	Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1
pyrus_communis	pycom02g10790
rosa_chinensis	RchiOBHm_Chr2g0100081 RchiOBHm_Chr2g0100111
rosa_laevigata	RLG00000016934
rosa_multiflora	Rmu_sc0000164.1_g000004 Rmu_sc0000164.1_g000009
rosa_roxburghii	Rroxscaffold_2G00142570
rosa_rugosa	Rorug02G0085500
rosa_samantha	Rh2AG134300 Rh2BG138000 Rh2CG139300 Rh2CG139600 Rh2DG139600 Rh2DG139900
rosa_wichuraiana	Rw2G010470 Rw2G010490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	250
AccII	CGCG	1 cut(s)	585
AclWI	GGATC	3 cut(s)	365, 378, 989
AcoI	YGGCCR	1 cut(s)	861
AcsI	RAATTY	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	405
AdeI	CACNNNGTG	1 cut(s)	29
AfaI	GTAC	1 cut(s)	939
AfiI	CCNNNNNNNGG	6 cut(s)	260, 293, 380, 433, 578, 734
AgsI	TTSAA	4 cut(s)	49, 140, 176, 926
AjuI	GAANNNNNNNTTGG	2 cut(s)	1017, 1049
AluBI	AGCT	7 cut(s)	34, 109, 392, 602, 634, 781, 929
AluI	AGCT	7 cut(s)	34, 109, 392, 602, 634, 781, 929
AlwI	GGATC	3 cut(s)	365, 378, 989
AoxI	GGCC	2 cut(s)	861, 1036
ApeKI	GCWGC	6 cut(s)	304, 392, 535, 599, 602, 1010
ApoI	RAATTY	1 cut(s)	516
ArsI	GACNNNNNNTTYG	2 cut(s)	501, 533
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	4 cut(s)	478, 509, 725, 1037
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	3 cut(s)	478, 509, 725
BalI	TGGCCA	1 cut(s)	863
BamHI	GGATCC	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	250
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	6 cut(s)	291, 379, 547, 589, 611, 997
BceAI	ACGGC	1 cut(s)	473
BfaI	CTAG	1 cut(s)	629
BfmI	CTRYAG	3 cut(s)	393, 533, 597
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	6 cut(s)	305, 393, 536, 600, 603, 1011
BlsI	GCNGC	6 cut(s)	306, 394, 537, 601, 604, 1012
Bme18I	GGWCC	3 cut(s)	478, 509, 725
BmgT120I	GGNCC	4 cut(s)	478, 509, 725, 1037
BmiI	GGNNCC	5 cut(s)	252, 312, 372, 480, 726
BmsI	GCATC	3 cut(s)	347, 838, 997
Bpu10I	CCTNAGC	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	6 cut(s)	260, 293, 380, 433, 578, 734
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	3 cut(s)	568, 957, 1049
BseGI	GGATG	3 cut(s)	193, 654, 961
BseLI	CCNNNNNNNGG	6 cut(s)	260, 293, 380, 433, 578, 734
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	3 cut(s)	568, 957, 1049
BseRI	GAGGAG	1 cut(s)	896
BseXI	GCAGC	6 cut(s)	291, 379, 547, 589, 611, 997
BseYI	CCCAGC	1 cut(s)	634
BsgI	GTGCAG	1 cut(s)	917
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	2 cut(s)	863, 1038
BshNI	GGYRCC	1 cut(s)	250
BsiSI	CCGG	2 cut(s)	308, 434
BslFI	GGGAC	1 cut(s)	738
BslI	CCNNNNNNNGG	6 cut(s)	260, 293, 380, 433, 578, 734
BsmFI	GGGAC	1 cut(s)	738
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	2 cut(s)	863, 1038
Bsp1407I	TGTACA	1 cut(s)	937
Bsp143I	GATC	5 cut(s)	154, 370, 696, 795, 994
BspANI	GGCC	2 cut(s)	863, 1038
BspCNI	CTCAG	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	585
BspHI	TCATGA	2 cut(s)	591, 1017
BspLI	GGNNCC	5 cut(s)	252, 312, 372, 480, 726
BspMAI	CTGCAG	3 cut(s)	397, 537, 601
BspPI	GGATC	3 cut(s)	365, 378, 989
BspQI	GCTCTTC	2 cut(s)	105, 448
BspT107I	GGYRCC	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	433
BsrGI	TGTACA	1 cut(s)	937
BsrI	ACTGG	3 cut(s)	568, 957, 1049
BssAI	RCCGGY	1 cut(s)	433
BssMI	GATC	5 cut(s)	154, 370, 696, 795, 994
Bst4CI	ACNGT	4 cut(s)	27, 273, 793, 1060
Bst6I	CTCTTC	3 cut(s)	105, 448, 815
BstAPI	GCANNNNNTGC	2 cut(s)	392, 401
BstAUI	TGTACA	1 cut(s)	937
BstC8I	GCNNGC	3 cut(s)	439, 741, 783
BstDEI	CTNAG	1 cut(s)	35
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	3 cut(s)	193, 654, 961
BstFNI	CGCG	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	5 cut(s)	157, 373, 699, 798, 997
BstMBI	GATC	5 cut(s)	154, 370, 696, 795, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 401
BstNSI	RCATGY	2 cut(s)	441, 747
BstSFI	CTRYAG	3 cut(s)	393, 533, 597
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	6 cut(s)	291, 379, 547, 589, 611, 997
BstX2I	RGATCY	3 cut(s)	154, 370, 994
BstYI	RGATCY	3 cut(s)	154, 370, 994
BsuRI	GGCC	2 cut(s)	863, 1038
BtsCI	GGATG	3 cut(s)	193, 654, 961
BtsI	GCAGTG	2 cut(s)	411, 739
BtsIMutI	CAGTG	5 cut(s)	23, 411, 739, 950, 1056
Cac8I	GCNNGC	3 cut(s)	439, 741, 783
CciI	TCATGA	2 cut(s)	591, 1017
CfoI	GCGC	1 cut(s)	585
Cfr10I	RCCGGY	1 cut(s)	433
Cfr13I	GGNCC	4 cut(s)	478, 509, 725, 1037
Csp6I	GTAC	1 cut(s)	938
CviAII	CATG	8 cut(s)	75, 438, 475, 592, 744, 859, 941, 1018
CviQI	GTAC	1 cut(s)	938
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	5 cut(s)	156, 372, 698, 797, 996
DpnII	GATC	5 cut(s)	154, 370, 696, 795, 994
DraI	TTTAAA	1 cut(s)	687
DraIII	CACNNNGTG	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	861
Eam1104I	CTCTTC	3 cut(s)	105, 448, 815
EarI	CTCTTC	3 cut(s)	105, 448, 815
Eco47I	GGWCC	3 cut(s)	478, 509, 725
Eco57I	CTGAAG	1 cut(s)	405
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	725
FaeI	CATG	8 cut(s)	78, 441, 478, 595, 747, 862, 944, 1021
FalI	AAGNNNNNCTT	6 cut(s)	542, 574, 869, 901, 903, 935
FaqI	GGGAC	1 cut(s)	738
FatI	CATG	8 cut(s)	74, 437, 474, 591, 743, 858, 940, 1017
Fnu4HI	GCNGC	6 cut(s)	305, 393, 536, 600, 603, 1011
FokI	GGATG	3 cut(s)	200, 641, 968
Fsp4HI	GCNGC	6 cut(s)	305, 393, 536, 600, 603, 1011
FspBI	CTAG	1 cut(s)	629
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	6 cut(s)	305, 393, 536, 600, 603, 1011
GsaI	CCCAGC	1 cut(s)	638
HaeIII	GGCC	2 cut(s)	863, 1038
HapII	CCGG	2 cut(s)	308, 434
HhaI	GCGC	1 cut(s)	585
Hin1II	CATG	8 cut(s)	78, 441, 478, 595, 747, 862, 944, 1021
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HindIII	AAGCTT	2 cut(s)	779, 927
HinfI	GANTC	4 cut(s)	176, 495, 662, 901
HpaII	CCGG	2 cut(s)	308, 434
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	3 cut(s)	509, 572, 950
Hpy188I	TCNGA	4 cut(s)	288, 424, 682, 891
Hpy188III	TCNNGA	4 cut(s)	49, 152, 592, 1018
Hpy8I	GTNNAC	3 cut(s)	509, 572, 950
HpyAV	CCTTC	3 cut(s)	55, 429, 687
HpyCH4III	ACNGT	4 cut(s)	27, 273, 793, 1060
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 401
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	8 cut(s)	78, 441, 478, 595, 747, 862, 944, 1021
HspAI	GCGC	1 cut(s)	583
Kzo9I	GATC	5 cut(s)	154, 370, 696, 795, 994
LguI	GCTCTTC	2 cut(s)	105, 448
LmnI	GCTCC	2 cut(s)	383, 790
Lsp1109I	GCAGC	6 cut(s)	291, 379, 547, 589, 611, 997
LweI	GCATC	3 cut(s)	347, 838, 997
MaeI	CTAG	1 cut(s)	629
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	5 cut(s)	156, 372, 698, 797, 996
MboI	GATC	5 cut(s)	154, 370, 696, 795, 994
MboII	GAAGA	6 cut(s)	29, 92, 435, 832, 971, 1037
MflI	RGATCY	3 cut(s)	154, 370, 994
MlsI	TGGCCA	1 cut(s)	863
MluNI	TGGCCA	1 cut(s)	863
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	9 cut(s)	30, 72, 118, 292, 477, 496, 766, 917, 927
Mox20I	TGGCCA	1 cut(s)	863
MscI	TGGCCA	1 cut(s)	863
MseI	TTAA	4 cut(s)	449, 614, 686, 806
MslI	CAYNNNNRTG	1 cut(s)	436
Msp20I	TGGCCA	1 cut(s)	863
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	2 cut(s)	308, 434
Mva1269I	GAATGC	1 cut(s)	406
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	2 cut(s)	392, 401
NdeII	GATC	5 cut(s)	154, 370, 696, 795, 994
NlaIII	CATG	8 cut(s)	78, 441, 478, 595, 747, 862, 944, 1021
NlaIV	GGNNCC	5 cut(s)	252, 312, 372, 480, 726
NmeAIII	GCCGAG	1 cut(s)	297
NspI	RCATGY	2 cut(s)	441, 747
PaeI	GCATGC	1 cut(s)	441
PagI	TCATGA	2 cut(s)	591, 1017
PciSI	GCTCTTC	2 cut(s)	105, 448
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	4 cut(s)	176, 495, 662, 901
PkrI	GCNGC	6 cut(s)	306, 394, 537, 601, 604, 1012
PpuMI	RGGWCCY	1 cut(s)	725
Psp5II	RGGWCCY	1 cut(s)	725
PspFI	CCCAGC	1 cut(s)	634
PspN4I	GGNNCC	5 cut(s)	252, 312, 372, 480, 726
PspPI	GGNCC	4 cut(s)	478, 509, 725, 1037
PspPPI	RGGWCCY	1 cut(s)	725
PstI	CTGCAG	3 cut(s)	397, 537, 601
PsuI	RGATCY	3 cut(s)	154, 370, 994
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	1 cut(s)	939
RsaNI	GTAC	1 cut(s)	938
RseI	CAYNNNNRTG	1 cut(s)	436
SapI	GCTCTTC	2 cut(s)	105, 448
SaqAI	TTAA	4 cut(s)	449, 614, 686, 806
SatI	GCNGC	6 cut(s)	305, 393, 536, 600, 603, 1011
Sau3AI	GATC	5 cut(s)	154, 370, 696, 795, 994
Sau96I	GGNCC	4 cut(s)	478, 509, 725, 1037
SfaNI	GCATC	3 cut(s)	347, 838, 997
SfcI	CTRYAG	3 cut(s)	393, 533, 597
SinI	GGWCC	3 cut(s)	478, 509, 725
SmiMI	CAYNNNNRTG	1 cut(s)	436
SphI	GCATGC	1 cut(s)	441
SspMI	CTAG	1 cut(s)	629
TaaI	ACNGT	4 cut(s)	27, 273, 793, 1060
TaqI	TCGA	2 cut(s)	501, 798
TatI	WGTACW	1 cut(s)	937
TfiI	GAWTC	4 cut(s)	176, 495, 662, 901
Tru1I	TTAA	4 cut(s)	449, 614, 686, 806
Tru9I	TTAA	4 cut(s)	449, 614, 686, 806
TscAI	CASTG	5 cut(s)	30, 411, 739, 957, 1063
TseI	GCWGC	6 cut(s)	304, 392, 535, 599, 602, 1010
TspDTI	ATGAA	5 cut(s)	833, 961, 972, 1034, 1038
TspRI	CASTG	5 cut(s)	30, 411, 739, 957, 1063
VpaK11BI	GGWCC	3 cut(s)	478, 509, 725
XagI	CCTNNNNNAGG	1 cut(s)	378
XapI	RAATTY	1 cut(s)	516
XceI	RCATGY	2 cut(s)	441, 747
XspI	CTAG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.