Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014081

Physical Location & Seq

Genomic Coordinates Reverse (-)

17292229 .. 17293925

Gene Structure 1697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGCTTCTTCTCGTATTTCTCTCCGCCTTGTTCGCCGATTTGCCTCAGCCGCCGCTGACGGTACGACCACCGCTCCCTCTTCAGGCAAAATCTCTGTCTCCAAAGCTAAGTCCACTCTCCGGAAAGAACACGATCCCGACAAAGCTCTTAAGATCTACGCCAATGTCTCCGATCACTCAGCCTCTCCTGTTTCATCTCGCTACGCCCAAGAGCTCACTGTTCGTCGCCTCGCCAAGTGTCGCCGTTTCTCAGACATCGAAACCCTAATTGAATCCCACAAAAATGATCCCAAAATCAAAGAAGAACCTTTCTACTCTACGCTTATCAGATCTTACGGCCAAGCCTCTATGTTTAATCACGCCATGAGAACCTTCGAGCAGATGGATCAATACGGCACACCCAGATCAGCTGTTTCCTTCAACGCCTTGCTCAACGCTTGTCTCCATTCCAAGAATTTCGATAAAGTCCCCCAACTGTTCGACGAAATTCCTCAGAGGTACAATAAGATCATCCCTGACAAAATCTCTTACGGTATATTGATTAAGTCATACTGTGACTCTGGTACCCCTGAAAAAGCCATTGAGATTATGAGACAGATGCAAGGTAAAGGCATGGAAGTTACTACCATTGCTTTCACCACCATTTTGAGTTCATTGTATAAGAAAGGTGAGCTCGAGGTAGCTGATAACTTGTGGAATGAGATGGTGAAGAAAGGCTGTGAATTGGATAATGCAGCGTATAATGTTCGTATAATGAGTGCTCAAAAGGAAAGCCCTGAAAGAGTTAAGGAGTTGATTGAAGAAATGAGTAGTATGGGATTGAAACCTGATACGATTAGCTATAACTATCTTATGACTGCGTATTGTGAGAGAGGAATGTTGGACGAAGCTAAGAAAGTGTATGAAGGACTTGAAGGTAACAACTGTGCTCCCAACGCAGCTACTTTTAGGACATTGATATTTCATCTTTGTTATAGCCGATTGTACGAGCAAGGCTATGCGATCTTCAAGAAGAGTGTGTATATGCACAAGATTCCAGATTTCAACACTTTGAAGCATTTGGTTGTGGGATTGGTGGAGAACAAGAAAAGAGATGACGCTAAAGGGTTGATTAGAACGGTGAAGAAGAAATTCCCTCCGAGTTTCTTGAATGCGTGGAAGAAACTCGAGGAGGAACTCGGGCTGTATTCAAAAACCGATGCTTTTCCATCTTCTGCAAAAGAGGCTGCTGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

412

Amino Acids

46.55

Weight (kDa)

9.18

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	105 - 148	2.6e-06	PPR repeat family
PPR_long	PF17177	105 - 224	2.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	136 - 186	3.4e-08	PPR repeat family
PPR_1	PF12854	171 - 201	4.6e-06	PPR repeat
PPR_2	PF13041	172 - 216	6.5e-07	PPR repeat family
PPR_2	PF13041	208 - 249	1.1e-09	PPR repeat family
PPR_3	PF13812	265 - 320	1.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	272 - 302	1.3e-07	PPR repeat
PPR_2	PF13041	276 - 324	2.4e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18520 AT4G36680
fragaria_vesca	FvH4_1g13650
malus_domestica	MD02G1151200.v1.1 MD15G1265700.v1.1
prunus_persica	Prupe.7G151800_v2.0.a1
pyrus_communis	pycom02g11870 pycom15g23140
rosa_chinensis	RchiOBHm_Chr2g0102001
rosa_laevigata	RLG00000017125
rosa_multiflora	Rmu_co8487067.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140840
rosa_samantha	Rh2AG151900 Rh2BG157300 Rh2CG157300 Rh2DG157400
rosa_wichuraiana	Rw2G011860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	563
AccB1I	GGYRCC	1 cut(s)	563
AccBSI	CCGCTC	1 cut(s)	74
AccIII	TCCGGA	1 cut(s)	120
AciI	CCGC	4 cut(s)	25, 51, 54, 72
AclWI	GGATC	3 cut(s)	128, 281, 393
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	3 cut(s)	454, 486, 1130
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	4 cut(s)	64, 500, 565, 986
AfiI	CCNNNNNNNGG	2 cut(s)	83, 120
AflII	CTTAAG	1 cut(s)	149
AluBI	AGCT	9 cut(s)	107, 146, 214, 410, 673, 683, 840, 890, 941
AluI	AGCT	9 cut(s)	107, 146, 214, 410, 673, 683, 840, 890, 941
Alw21I	GWGCWC	4 cut(s)	216, 675, 763, 931
Alw26I	GTCTC	4 cut(s)	103, 172, 446, 586
AlwI	GGATC	3 cut(s)	128, 281, 393
Ama87I	CYCGRG	3 cut(s)	674, 1166, 1178
Aor13HI	TCCGGA	1 cut(s)	120
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	5 cut(s)	734, 938, 1226, 1229, 1232
ApoI	RAATTY	3 cut(s)	454, 486, 1130
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
Asp700I	GAANNNNTTC	1 cut(s)	1130
Asp718I	GGTACC	1 cut(s)	563
AsuHPI	GGTGA	4 cut(s)	628, 680, 718, 1132
AvaI	CYCGRG	3 cut(s)	674, 1166, 1178
BaeI	ACNNNNGTAYC	2 cut(s)	547, 580
BanI	GGYRCC	1 cut(s)	563
BanII	GRGCYC	2 cut(s)	216, 675
Bbv12I	GWGCWC	4 cut(s)	216, 675, 763, 931
BbvCI	CCTCAGC	1 cut(s)	46
BbvI	GCAGC	5 cut(s)	746, 950, 1213, 1216, 1219
BccI	CCATC	3 cut(s)	376, 697, 1216
BceAI	ACGGC	3 cut(s)	228, 352, 409
BcoDI	GTCTC	4 cut(s)	103, 172, 446, 586
BfrI	CTTAAG	1 cut(s)	149
BglII	AGATCT	2 cut(s)	153, 329
BisI	GCNGC	7 cut(s)	51, 54, 735, 939, 1227, 1230, 1233
BlsI	GCNGC	7 cut(s)	52, 55, 736, 940, 1228, 1231, 1234
BmeT110I	CYCGRG	3 cut(s)	674, 1166, 1178
BmiI	GGNNCC	1 cut(s)	565
BmsI	GCATC	2 cut(s)	588, 1189
Bpu10I	CCTNAGC	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 120
Bse3DI	GCAATG	1 cut(s)	627
BseAI	TCCGGA	1 cut(s)	120
BseGI	GGATG	1 cut(s)	510
BseLI	CCNNNNNNNGG	2 cut(s)	83, 120
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	4 cut(s)	60, 192, 264, 506
BseRI	GAGGAG	1 cut(s)	1184
BseXI	GCAGC	5 cut(s)	746, 950, 1213, 1216, 1219
BshFI	GGCC	1 cut(s)	339
BshNI	GGYRCC	1 cut(s)	563
BsiHKAI	GWGCWC	4 cut(s)	216, 675, 763, 931
BsiHKCI	CYCGRG	3 cut(s)	674, 1166, 1178
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	2 cut(s)	83, 120
BsmAI	GTCTC	4 cut(s)	103, 172, 446, 586
BsmFI	GGGAC	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	1156
BsnI	GGCC	1 cut(s)	339
BsoBI	CYCGRG	3 cut(s)	674, 1166, 1178
Bsp1286I	GDGCHC	4 cut(s)	216, 675, 763, 931
Bsp13I	TCCGGA	1 cut(s)	120
Bsp143I	GATC	9 cut(s)	133, 153, 172, 286, 329, 385, 404, 507, 1002
BspACI	CCGC	4 cut(s)	25, 51, 54, 72
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	4 cut(s)	59, 191, 263, 505
BspEI	TCCGGA	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	565
BspPI	GGATC	3 cut(s)	128, 281, 393
BspT107I	GGYRCC	1 cut(s)	563
BspTI	CTTAAG	1 cut(s)	149
BsrBI	CCGCTC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	627
BssMI	GATC	9 cut(s)	133, 153, 172, 286, 329, 385, 404, 507, 1002
Bst4CI	ACNGT	7 cut(s)	62, 220, 477, 533, 554, 926, 1120
Bst6I	CTCTTC	2 cut(s)	85, 1007
BstAFI	CTTAAG	1 cut(s)	149
BstDEI	CTNAG	6 cut(s)	46, 108, 178, 250, 492, 891
BstF5I	GGATG	1 cut(s)	510
BstKTI	GATC	9 cut(s)	136, 156, 175, 289, 332, 388, 407, 510, 1005
BstMAI	GTCTC	4 cut(s)	103, 172, 446, 586
BstMBI	GATC	9 cut(s)	133, 153, 172, 286, 329, 385, 404, 507, 1002
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 50, 935, 1223, 1232
BstV1I	GCAGC	5 cut(s)	746, 950, 1213, 1216, 1219
BstX2I	RGATCY	2 cut(s)	153, 329
BstYI	RGATCY	2 cut(s)	153, 329
BsuRI	GGCC	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	510
BtsIMutI	CAGTG	1 cut(s)	216
CseI	GACGC	1 cut(s)	1106
Csp6I	GTAC	4 cut(s)	63, 499, 564, 985
CviAII	CATG	2 cut(s)	364, 613
CviQI	GTAC	4 cut(s)	63, 499, 564, 985
DdeI	CTNAG	6 cut(s)	46, 108, 178, 250, 492, 891
DpnI	GATC	9 cut(s)	135, 155, 174, 288, 331, 387, 406, 509, 1004
DpnII	GATC	9 cut(s)	133, 153, 172, 286, 329, 385, 404, 507, 1002
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	2 cut(s)	85, 1007
EarI	CTCTTC	2 cut(s)	85, 1007
EciI	GGCGGA	1 cut(s)	14
Ecl136II	GAGCTC	2 cut(s)	214, 673
Eco24I	GRGCYC	2 cut(s)	216, 675
Eco53kI	GAGCTC	2 cut(s)	214, 673
Eco57I	CTGAAG	1 cut(s)	66
Eco88I	CYCGRG	3 cut(s)	674, 1166, 1178
EcoICRI	GAGCTC	2 cut(s)	214, 673
EcoT38I	GRGCYC	2 cut(s)	216, 675
FaeI	CATG	2 cut(s)	367, 616
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	2 cut(s)	363, 612
Fnu4HI	GCNGC	7 cut(s)	51, 54, 735, 939, 1227, 1230, 1233
FokI	GGATG	1 cut(s)	497
FriOI	GRGCYC	2 cut(s)	216, 675
Fsp4HI	GCNGC	7 cut(s)	51, 54, 735, 939, 1227, 1230, 1233
GluI	GCNGC	7 cut(s)	51, 54, 735, 939, 1227, 1230, 1233
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	1 cut(s)	121
HgaI	GACGC	1 cut(s)	1106
Hin1II	CATG	2 cut(s)	367, 616
HinfI	GANTC	3 cut(s)	272, 557, 1033
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	4 cut(s)	628, 680, 718, 1132
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	5 cut(s)	172, 253, 329, 495, 1140
Hpy188III	TCNNGA	5 cut(s)	121, 137, 1009, 1037, 1147
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	2 cut(s)	228, 485
HpyAV	CCTTC	4 cut(s)	382, 427, 899, 908
HpyCH4III	ACNGT	7 cut(s)	62, 220, 477, 533, 554, 926, 1120
HpyCH4V	TGCA	4 cut(s)	601, 734, 1027, 1217
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 50, 935, 1223, 1232
HpyF3I	CTNAG	6 cut(s)	46, 108, 178, 250, 492, 891
Hsp92II	CATG	2 cut(s)	367, 616
Kpn2I	TCCGGA	1 cut(s)	120
KpnI	GGTACC	1 cut(s)	567
Kzo9I	GATC	9 cut(s)	133, 153, 172, 286, 329, 385, 404, 507, 1002
LmnI	GCTCC	2 cut(s)	79, 934
Lsp1109I	GCAGC	5 cut(s)	746, 950, 1213, 1216, 1219
LweI	GCATC	2 cut(s)	588, 1189
MaeIII	GTNAC	3 cut(s)	554, 619, 917
MalI	GATC	9 cut(s)	135, 155, 174, 288, 331, 387, 406, 509, 1004
MbiI	CCGCTC	1 cut(s)	74
MboI	GATC	9 cut(s)	133, 153, 172, 286, 329, 385, 404, 507, 1002
MflI	RGATCY	2 cut(s)	153, 329
MhlI	GDGCHC	4 cut(s)	216, 675, 763, 931
MluCI	AATT	5 cut(s)	267, 454, 486, 722, 1130
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	861
MroI	TCCGGA	1 cut(s)	120
MroXI	GAANNNNTTC	1 cut(s)	1130
MseI	TTAA	5 cut(s)	150, 354, 543, 786, 1237
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	56, 410
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	1 cut(s)	121
Mva1269I	GAATGC	1 cut(s)	1156
MwoI	GCNNNNNNNGC	5 cut(s)	33, 50, 935, 1223, 1232
NdeII	GATC	9 cut(s)	133, 153, 172, 286, 329, 385, 404, 507, 1002
NlaIII	CATG	2 cut(s)	367, 616
NlaIV	GGNNCC	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	554
PaeR7I	CTCGAG	2 cut(s)	674, 1166
PctI	GAATGC	1 cut(s)	1156
PdmI	GAANNNNTTC	1 cut(s)	1130
PfeI	GAWTC	2 cut(s)	272, 1033
PkrI	GCNGC	7 cut(s)	52, 55, 736, 940, 1228, 1231, 1234
PleI	GAGTC	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	551
Psp124BI	GAGCTC	2 cut(s)	216, 675
PspN4I	GGNNCC	1 cut(s)	565
PspXI	VCTCGAGB	2 cut(s)	674, 1166
PsuI	RGATCY	2 cut(s)	153, 329
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	4 cut(s)	64, 500, 565, 986
RsaNI	GTAC	4 cut(s)	63, 499, 564, 985
RseI	CAYNNNNRTG	1 cut(s)	282
SacI	GAGCTC	2 cut(s)	216, 675
SaqAI	TTAA	5 cut(s)	150, 354, 543, 786, 1237
SatI	GCNGC	7 cut(s)	51, 54, 735, 939, 1227, 1230, 1233
Sau3AI	GATC	9 cut(s)	133, 153, 172, 286, 329, 385, 404, 507, 1002
SchI	GAGTC	1 cut(s)	551
SduI	GDGCHC	4 cut(s)	216, 675, 763, 931
SfaNI	GCATC	2 cut(s)	588, 1189
Sfr274I	CTCGAG	2 cut(s)	674, 1166
SlaI	CTCGAG	2 cut(s)	674, 1166
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	3 cut(s)	149, 674, 1166
SmoI	CTYRAG	3 cut(s)	149, 674, 1166
Sse9I	AATT	5 cut(s)	267, 454, 486, 722, 1130
SsiI	CCGC	4 cut(s)	25, 51, 54, 72
SstI	GAGCTC	2 cut(s)	216, 675
TaaI	ACNGT	7 cut(s)	62, 220, 477, 533, 554, 926, 1120
TaqI	TCGA	6 cut(s)	258, 375, 459, 480, 675, 1167
TasI	AATT	5 cut(s)	267, 454, 486, 722, 1130
TauI	GCSGC	2 cut(s)	53, 56
TfiI	GAWTC	2 cut(s)	272, 1033
Tru1I	TTAA	5 cut(s)	150, 354, 543, 786, 1237
Tru9I	TTAA	5 cut(s)	150, 354, 543, 786, 1237
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	5 cut(s)	734, 938, 1226, 1229, 1232
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	4 cut(s)	183, 642, 918, 953
TspRI	CASTG	1 cut(s)	223
Vha464I	CTTAAG	1 cut(s)	149
XapI	RAATTY	3 cut(s)	454, 486, 1130
XhoI	CTCGAG	2 cut(s)	674, 1166
XmnI	GAANNNNTTC	1 cut(s)	1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.