MD15G1265700.v1.1

Pentatricopeptide repeat-containing protein At4g36680

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
22796797 .. 22798014
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1265700.v1.1.491

Sequence Viewer

Length: 1218 bp
ATGTCATCTTCGATTTCCCTCCGCCACCTCCGCCACCTCTCCACCACCGCCGCCAAGTCTACCCTCTCCATCTCAAAAGCCAACTCAAAGCTCCGAACCGAGTACGACCCGGACAAAGCCCTCCAGATTTACTCCTCCGTCTCCCAACACGATTCTTCTCCTACCTTGTCTCGCTACGCCCAGGATCTCACCGTCCGCCGCCTCGCCAAGTCCCACCGCTTCGCCGACATCGAATCCTTCATTGAATCGCACAAGAATGACCCCAAAATCACCCAGGAGCCCTTCCTTTCCACCCTCATCCGATCCTACGGCCGCGCCGGTATGTTCGACCAGGCATTGAGGACGTTTGATCAGATGGAACAGCTCGGTACTCCGAGAACCGCCATTTCCTTCAACACTCTGTTGTCTGCCTGCAACGATTCAAAGCATTTCGACAGTGTCCCCCAGCTGTTCGACGAAATTCCCAGCAAGCATGGGGTCTCCCCTGATAAAGTGTCGTATGGTATACTGATCAAGTCGTATTGCGCAGCGGATAAGCCCGACAAGGCAATGGAGACGCTGAGATTGATGGAGAAGAAGGGTATTGAGATCACTGCAGTGACGTTCACCACGATTTTTAATGCTTTGTACAAGAAGGGCAATGGCGAAGAGGCGGAGAAGTTGTGGGATGAGATGGTGAAGAAGGGCGTTGCGGTTGACGCTGCGGCTTATAATGTTAAGATTATGTATGTCCATGGTGGGAGTGCGGACAATGTGAAAGCTTTGATTGAGGAAATGGCGAATGCTGGGCTGAAACCAGATACAATTAGCTACAATTACTTGATGACTTGCTATTGCAGGAATGGGATGATGGAAGAAGCTTTCAAGGTTTATGAGGGGTTGGAGGGAAATGCATGTAATCCGAATGCTGCAACTTTCCGGACTTTGATATTTTATTTGTGTAAGAGTGAGGATTATGACAAGGCGTATGAGGTTTTCAAGAGGAGTGTGGAGGTGCATAAGATCCCTGATTTCAATACGATGAAGTATTTGGTGGAAGGATTGGTGAAGAAGAAGAAGATGAAGGAGGCAAAGGGATTGATACGCACGATCAAGAAGAAGTTTCCTCCTAATGTTTTGGTTGCCTGGAAGAAGTTGGAGCAGGGTCTAGGTTTGGCTTCTTCTGATACTGATGCTTCTTCGGTCACGGATGAGGAGGCTAAAGAGGCTACAGCATAA

Protein Analysis

406

Amino Acids

45.33

Weight (kDa)

8.61

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 98 - 138 6.6e-07 PPR repeat family
PPR_long PF17177 110 - 232 3.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 128 - 175 6.1e-08 PPR repeat family
TPR_24 PF23276 157 - 241 2.8e-10 Fungal tetratrico peptide repeats
PPR_1 PF12854 159 - 191 1.8e-07 PPR repeat
PPR_2 PF13041 162 - 211 5.1e-12 PPR repeat family
PPR PF01535 165 - 195 2.4e-06 PPR repeat
PPR_2 PF13041 199 - 239 1.6e-10 PPR repeat family
PPR PF01535 200 - 230 1.6e-07 PPR repeat
PPR_long PF17177 221 - 340 1.3e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 255 - 310 1e-07 Pentatricopeptide repeat domain
TPR_24 PF23276 257 - 360 3e-08 Fungal tetratrico peptide repeats
PPR_1 PF12854 263 - 292 5.2e-09 PPR repeat
PPR_2 PF13041 266 - 315 1.8e-13 PPR repeat family
PPR PF01535 269 - 294 1.4e-06 PPR repeat
PPR_1 PF12854 299 - 327 4.9e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18520 AT4G36680
fragaria_vesca FvH4_1g13650
malus_domestica MD02G1151200.v1.1 MD15G1265700.v1.1
prunus_persica Prupe.7G151800_v2.0.a1
pyrus_communis pycom02g11870 pycom15g23140
rosa_chinensis RchiOBHm_Chr2g0102001
rosa_laevigata RLG00000017125
rosa_multiflora Rmu_co8487067.1_g000001
rosa_roxburghii Rroxscaffold_2G00140840
rosa_samantha Rh2AG151900 Rh2BG157300 Rh2CG157300 Rh2DG157400
rosa_wichuraiana Rw2G011860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 711
Acc16I TGCGCA 1 cut(s) 526
AccI GTMKAC 2 cut(s) 59, 505
AccII CGCG 1 cut(s) 315
AccIII TCCGGA 1 cut(s) 918
AclWI GGATC 3 cut(s) 192, 297, 997
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 1 cut(s) 459
AfaI GTAC 3 cut(s) 104, 370, 629
AgsI TTSAA 6 cut(s) 245, 394, 423, 865, 979, 1015
AjnI CCWGG 4 cut(s) 180, 273, 330, 1124
AleI CACNNNNGTG 1 cut(s) 596
AluBI AGCT 6 cut(s) 91, 364, 448, 761, 810, 860
AluI AGCT 6 cut(s) 91, 364, 448, 761, 810, 860
Alw26I GTCTC 4 cut(s) 145, 174, 484, 548
AlwI GGATC 3 cut(s) 192, 297, 997
Aor13HI TCCGGA 1 cut(s) 918
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 3 cut(s) 527, 701, 908
ApoI RAATTY 1 cut(s) 459
AspLEI GCGC 2 cut(s) 317, 527
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 5 cut(s) 181, 262, 598, 688, 1057
BanII GRGCYC 1 cut(s) 282
BbvI GCAGC 3 cut(s) 539, 688, 895
BccI CCATC 5 cut(s) 77, 349, 562, 667, 844
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 4 cut(s) 182, 275, 332, 1126
BclI TGATCA 2 cut(s) 349, 510
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 4 cut(s) 145, 174, 484, 548
BfaI CTAG 1 cut(s) 1148
BfmI CTRYAG 2 cut(s) 594, 1209
BisI GCNGC 7 cut(s) 51, 199, 313, 528, 702, 705, 909
BlsI GCNGC 7 cut(s) 52, 200, 314, 529, 703, 706, 910
Bme1390I CCNGG 5 cut(s) 110, 182, 275, 332, 1126
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 5 cut(s) 110, 182, 275, 332, 1126
BmsI GCATC 1 cut(s) 1162
BpmI CTGGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 3 cut(s) 180, 273, 733
BsaWI WCCGGW 1 cut(s) 918
BsaXI ACNNNNNCTCC 2 cut(s) 647, 677
Bse118I RCCGGY 1 cut(s) 317
Bse3DI GCAATG 2 cut(s) 555, 646
BseAI TCCGGA 1 cut(s) 918
BseBI CCWGG 4 cut(s) 182, 275, 332, 1126
BseDI CCNNGG 3 cut(s) 180, 273, 733
BseGI GGATG 4 cut(s) 297, 673, 852, 1195
BseMI GCAATG 2 cut(s) 555, 646
BseMII CTCAG 1 cut(s) 551
BseRI GAGGAG 3 cut(s) 124, 997, 1208
BseX3I CGGCCG 1 cut(s) 310
BseXI GCAGC 3 cut(s) 539, 688, 895
BseYI CCCAGC 3 cut(s) 444, 464, 785
Bsh1236I CGCG 1 cut(s) 315
Bsh1285I CGRYCG 1 cut(s) 313
BshFI GGCC 1 cut(s) 312
BsiEI CGRYCG 1 cut(s) 313
BsiSI CCGG 3 cut(s) 110, 318, 919
BslFI GGGAC 2 cut(s) 196, 425
BsmAI GTCTC 4 cut(s) 145, 174, 484, 548
BsmBI CGTCTC 2 cut(s) 145, 548
BsmFI GGGAC 2 cut(s) 196, 425
BsmI GAATGC 2 cut(s) 787, 910
BsnI GGCC 1 cut(s) 312
Bso31I GGTCTC 1 cut(s) 484
Bsp1286I GDGCHC 1 cut(s) 282
Bsp13I TCCGGA 1 cut(s) 918
Bsp1407I TGTACA 1 cut(s) 627
Bsp143I GATC 7 cut(s) 184, 302, 349, 510, 588, 1002, 1089
Bsp19I CCATGG 1 cut(s) 733
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 1 cut(s) 552
BspEI TCCGGA 1 cut(s) 918
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 279
BspMAI CTGCAG 1 cut(s) 598
BspPI GGATC 3 cut(s) 192, 297, 997
BspTNI GGTCTC 1 cut(s) 484
BsrDI GCAATG 2 cut(s) 555, 646
BsrFI RCCGGY 1 cut(s) 317
BsrGI TGTACA 1 cut(s) 627
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 3 cut(s) 180, 273, 733
BssMI GATC 7 cut(s) 184, 302, 349, 510, 588, 1002, 1089
BssNAI GTATAC 1 cut(s) 506
BssT1I CCWWGG 1 cut(s) 733
Bst1107I GTATAC 1 cut(s) 506
Bst2UI CCWGG 4 cut(s) 182, 275, 332, 1126
Bst4CI ACNGT 2 cut(s) 193, 437
Bst6I CTCTTC 1 cut(s) 642
BstAUI TGTACA 1 cut(s) 627
BstC8I GCNNGC 2 cut(s) 412, 470
BstDEI CTNAG 1 cut(s) 560
BstDSI CCRYGG 1 cut(s) 733
BstF5I GGATG 4 cut(s) 297, 673, 852, 1195
BstFNI CGCG 1 cut(s) 315
BstHHI GCGC 2 cut(s) 317, 527
BstKTI GATC 7 cut(s) 187, 305, 352, 513, 591, 1005, 1092
BstMAI GTCTC 4 cut(s) 145, 174, 484, 548
BstMBI GATC 7 cut(s) 184, 302, 349, 510, 588, 1002, 1089
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 3 cut(s) 30, 698, 1205
BstNI CCWGG 4 cut(s) 182, 275, 332, 1126
BstNSI RCATGY 1 cut(s) 897
BstSCI CCNGG 5 cut(s) 108, 180, 273, 330, 1124
BstSFI CTRYAG 2 cut(s) 594, 1209
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 3 cut(s) 539, 688, 895
BstX2I RGATCY 2 cut(s) 184, 1002
BstYI RGATCY 2 cut(s) 184, 1002
BstZ17I GTATAC 1 cut(s) 506
BstZI CGGCCG 1 cut(s) 310
BsuRI GGCC 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 733
BtsCI GGATG 4 cut(s) 297, 673, 852, 1195
BtsI GCAGTG 2 cut(s) 591, 603
BtsIMutI CAGTG 3 cut(s) 442, 591, 603
Cac8I GCNNGC 2 cut(s) 412, 470
CfoI GCGC 2 cut(s) 317, 527
Cfr10I RCCGGY 1 cut(s) 317
CseI GACGC 2 cut(s) 565, 707
Csp6I GTAC 3 cut(s) 103, 369, 628
CviAII CATG 3 cut(s) 473, 734, 894
CviQI GTAC 3 cut(s) 103, 369, 628
DdeI CTNAG 1 cut(s) 560
DpnI GATC 7 cut(s) 186, 304, 351, 512, 590, 1004, 1091
DpnII GATC 7 cut(s) 184, 302, 349, 510, 588, 1002, 1089
EaeI YGGCCR 1 cut(s) 310
EagI CGGCCG 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
EciI GGCGGA 4 cut(s) 11, 20, 185, 668
EclXI CGGCCG 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 733
Eco24I GRGCYC 1 cut(s) 282
Eco31I GGTCTC 1 cut(s) 484
Eco52I CGGCCG 1 cut(s) 310
EcoRII CCWGG 4 cut(s) 180, 273, 330, 1124
EcoT14I CCWWGG 1 cut(s) 733
EcoT22I ATGCAT 1 cut(s) 895
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 733
Esp3I CGTCTC 2 cut(s) 145, 548
FaeI CATG 3 cut(s) 476, 737, 897
FaqI GGGAC 2 cut(s) 196, 425
FatI CATG 3 cut(s) 472, 733, 893
FbaI TGATCA 2 cut(s) 349, 510
FblI GTMKAC 2 cut(s) 59, 505
Fnu4HI GCNGC 7 cut(s) 51, 199, 313, 528, 702, 705, 909
FokI GGATG 4 cut(s) 284, 680, 859, 1202
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 7 cut(s) 51, 199, 313, 528, 702, 705, 909
FspBI CTAG 1 cut(s) 1148
FspI TGCGCA 1 cut(s) 526
GlaI GCGC 2 cut(s) 316, 526
GluI GCNGC 7 cut(s) 51, 199, 313, 528, 702, 705, 909
GsaI CCCAGC 3 cut(s) 448, 468, 789
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 1 cut(s) 312
HapII CCGG 3 cut(s) 110, 318, 919
HgaI GACGC 2 cut(s) 565, 707
HhaI GCGC 2 cut(s) 317, 527
Hin1II CATG 3 cut(s) 476, 737, 897
Hin6I GCGC 2 cut(s) 315, 525
HinP1I GCGC 2 cut(s) 315, 525
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HindIII AAGCTT 2 cut(s) 759, 858
HinfI GANTC 4 cut(s) 152, 233, 245, 419
HpaII CCGG 3 cut(s) 110, 318, 919
HphI GGTGA 5 cut(s) 181, 262, 598, 688, 1057
Hpy166II GTNNAC 4 cut(s) 60, 506, 606, 697
Hpy188I TCNGA 6 cut(s) 95, 302, 354, 375, 903, 1165
Hpy188III TCNNGA 4 cut(s) 124, 919, 979, 1093
Hpy8I GTNNAC 4 cut(s) 60, 506, 606, 697
Hpy99I CGWCG 1 cut(s) 458
HpyAV CCTTC 8 cut(s) 247, 292, 400, 571, 628, 676, 1031, 1057
HpyCH4III ACNGT 2 cut(s) 193, 437
HpyCH4IV ACGT 2 cut(s) 344, 602
HpyCH4V TGCA 6 cut(s) 414, 596, 837, 893, 911, 997
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 698, 1205
HpyF3I CTNAG 1 cut(s) 560
HpySE526I ACGT 2 cut(s) 344, 602
Hsp92II CATG 3 cut(s) 476, 737, 897
HspAI GCGC 2 cut(s) 315, 525
Kpn2I TCCGGA 1 cut(s) 918
Ksp22I TGATCA 2 cut(s) 349, 510
Kzo9I GATC 7 cut(s) 184, 302, 349, 510, 588, 1002, 1089
LmnI GCTCC 3 cut(s) 96, 277, 1138
Lsp1109I GCAGC 3 cut(s) 539, 688, 895
LweI GCATC 1 cut(s) 1162
MaeI CTAG 1 cut(s) 1148
MaeII ACGT 2 cut(s) 344, 602
MaeIII GTNAC 2 cut(s) 598, 1183
MalI GATC 7 cut(s) 186, 304, 351, 512, 590, 1004, 1091
MboI GATC 7 cut(s) 184, 302, 349, 510, 588, 1002, 1089
MflI RGATCY 2 cut(s) 184, 1002
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 3 cut(s) 459, 804, 814
MmeI TCCRAC 2 cut(s) 861, 1116
Mph1103I ATGCAT 1 cut(s) 895
MroI TCCGGA 1 cut(s) 918
MseI TTAA 2 cut(s) 618, 717
MslI CAYNNNNRTG 2 cut(s) 255, 596
MspA1I CMGCKG 2 cut(s) 448, 530
MspI CCGG 3 cut(s) 110, 318, 919
MspR9I CCNGG 5 cut(s) 110, 182, 275, 332, 1126
Mva1269I GAATGC 2 cut(s) 787, 910
MvaI CCWGG 4 cut(s) 182, 275, 332, 1126
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 3 cut(s) 30, 698, 1205
NciI CCSGG 1 cut(s) 110
NcoI CCATGG 1 cut(s) 733
NdeII GATC 7 cut(s) 184, 302, 349, 510, 588, 1002, 1089
NlaIII CATG 3 cut(s) 476, 737, 897
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 2 cut(s) 598, 1183
NsbI TGCGCA 1 cut(s) 526
NsiI ATGCAT 1 cut(s) 895
NspI RCATGY 1 cut(s) 897
OliI CACNNNNGTG 1 cut(s) 596
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 608
PctI GAATGC 2 cut(s) 787, 910
PfeI GAWTC 4 cut(s) 152, 233, 245, 419
PflFI GACNNNGTC 1 cut(s) 437
PkrI GCNGC 7 cut(s) 52, 200, 314, 529, 703, 706, 910
PsiI TTATAA 1 cut(s) 711
Psp6I CCWGG 4 cut(s) 180, 273, 330, 1124
PspFI CCCAGC 3 cut(s) 444, 464, 785
PspGI CCWGG 4 cut(s) 180, 273, 330, 1124
PspN4I GGNNCC 1 cut(s) 279
PstI CTGCAG 1 cut(s) 598
PsuI RGATCY 2 cut(s) 184, 1002
PsyI GACNNNGTC 1 cut(s) 437
PvuII CAGCTG 1 cut(s) 448
RsaI GTAC 3 cut(s) 104, 370, 629
RsaNI GTAC 3 cut(s) 103, 369, 628
RseI CAYNNNNRTG 2 cut(s) 255, 596
SaqAI TTAA 2 cut(s) 618, 717
SatI GCNGC 7 cut(s) 51, 199, 313, 528, 702, 705, 909
Sau3AI GATC 7 cut(s) 184, 302, 349, 510, 588, 1002, 1089
ScrFI CCNGG 5 cut(s) 110, 182, 275, 332, 1126
SduI GDGCHC 1 cut(s) 282
SfaNI GCATC 1 cut(s) 1162
SfcI CTRYAG 2 cut(s) 594, 1209
SmiMI CAYNNNNRTG 2 cut(s) 255, 596
Sse9I AATT 3 cut(s) 459, 804, 814
SspMI CTAG 1 cut(s) 1148
StyD4I CCNGG 5 cut(s) 108, 180, 273, 330, 1124
StyI CCWWGG 1 cut(s) 733
TaaI ACNGT 2 cut(s) 193, 437
TaiI ACGT 2 cut(s) 347, 605
TaqI TCGA 5 cut(s) 11, 231, 327, 432, 453
TaqII GACCGA 1 cut(s) 1171
TasI AATT 3 cut(s) 459, 804, 814
TatI WGTACW 1 cut(s) 627
TauI GCSGC 4 cut(s) 53, 201, 315, 707
TfiI GAWTC 4 cut(s) 152, 233, 245, 419
Tru1I TTAA 2 cut(s) 618, 717
Tru9I TTAA 2 cut(s) 618, 717
TscAI CASTG 3 cut(s) 442, 598, 603
TseFI GTSAC 2 cut(s) 598, 1183
TseI GCWGC 3 cut(s) 527, 701, 908
Tsp45I GTSAC 2 cut(s) 598, 1183
TspDTI ATGAA 3 cut(s) 229, 1037, 1076
TspGWI ACGGA 2 cut(s) 127, 1202
TspRI CASTG 3 cut(s) 442, 598, 603
Tth111I GACNNNGTC 1 cut(s) 437
XapI RAATTY 1 cut(s) 459
XceI RCATGY 1 cut(s) 897
XmiI GTMKAC 2 cut(s) 59, 505
XspI CTAG 1 cut(s) 1148
Zsp2I ATGCAT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.