Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014081

Physical Location & Seq

Genomic Coordinates Forward (+)

79161866 .. 79163259

Gene Structure 1394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00140840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGTCCTCCTCCTGCATTCCAATCCGCCACCTCCGCCGCCTGTCCACCACCGCCGCTGCCGCTCAATCCTCCATCTCCATTTCCAAGGCCAAGTCAAAGCTCCGGTCAGAACACGACCCGGACAAAGCCCTGGAAATCTACTCCTCAGTCTCCGAGCACTACTCCTCTCCCACCTCATCCCGCTATGCTCAGGACCTCGCCGTCCGCCGCCTCGCCAAGTCCCACCGCTTCGCCGACATCGAGTCCTTCATCGAGTCCCACAAAAACGACCCCAAAATCAAACAAGAGCCATACCTGTCCACCCTCATCCGATCCTACGGCCGAGCAGGCATGTTCGAGCACGCCTTGAAAACCTATGACCAAATGGACCAGTTGGGTACTCCGAGATCGGCCATTTCTTTCAATTCTTTGCTTACTGCTTGCAATCTTTCGAAACAGTTTGATAAAGTTCCCCAATTTTTCAATGAAATTCCGAGCAAGTATGGTGTGTCTCCTGATAAAGTGTCGTACGGGATTCTGATCAAGTCGTTTTGCGAAGCGGGGAAGCCGGAGAAGGCGATTGAGACGGTGCGGATGATGGAGGAGAAGGGCATTGAGGTAACTGCGGTGACATTTACAACTATATTCAATGCTTTGTATAAGAAAGGAAATGGTGAAGAGGCTGACAAGTTGTGGAATGAGATGGTGGAGAAGGGTTGCGAGATTGATGTTGCGGCGTATAATGTGAAGATTATGTATGCTCATGTCAATGGGAGCCCCGAAGATGTCTGGGATGATGGAAGAAGCCGAGAAGGTTTACAGGGGTTGGAGGCGAATAAGCTTAATCCTAATGCGGCCACTTTCAGGACTTTGGTGTTTTATCTCTGTAAGAATGAGTATTTTGAGAAGGCGTACAGGGTTTTCAAGAAGAGTGTGGAGATGCATAAGATACCGGATTTTAATACTTTGAAGTTTTTGGCGGAGGGATTGATGAAGAAAAATATGAGGAAGGAGGCCAAGGGGTTGATTCGGACAGTAAAGAAGAAGTTTCCTCCTAATGTTGTGAATGCCTGGAAGAGAGTGGAGGAGGGTCTTGGTTTGGTCCCTGAAGAACTCGATGCTTCTTGTGTCCCTCATGATGATGGTGAAGAGGTTACACCATCATCAACAGGGATTGGTGGAGAGAAGCAAGGATCTGTAAATAGAAAGCAGTGGAAGAAGCCCAAGGCTAAGAAGTGGTTTCCTCCTAATGCTGGGAATGACCGGAAGAAAGTGAGTGCTGTTACTTCTTCAGTCCCTGGTGATAGTGCTAAAGAGGCTACAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

435

Amino Acids

48.66

Weight (kDa)

9.2

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	101 - 141	6e-06	PPR repeat family
PPR_long	PF17177	113 - 220	2.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	130 - 178	3.4e-07	PPR repeat family
TPR_24	PF23276	161 - 248	4.8e-10	Fungal tetratrico peptide repeats
PPR_1	PF12854	162 - 194	1.9e-08	PPR repeat
PPR_2	PF13041	165 - 214	9e-12	PPR repeat family
PPR	PF01535	168 - 198	1.6e-06	PPR repeat
PPR_2	PF13041	202 - 242	2.3e-11	PPR repeat family
PPR	PF01535	203 - 233	2.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18520 AT4G36680
fragaria_vesca	FvH4_1g13650
malus_domestica	MD02G1151200.v1.1 MD15G1265700.v1.1
prunus_persica	Prupe.7G151800_v2.0.a1
pyrus_communis	pycom02g11870 pycom15g23140
rosa_chinensis	RchiOBHm_Chr2g0102001
rosa_laevigata	RLG00000017125
rosa_multiflora	Rmu_co8487067.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140840
rosa_samantha	Rh2AG151900 Rh2BG157300 Rh2CG157300 Rh2DG157400
rosa_wichuraiana	Rw2G011860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AccBSI	CCGCTC	1 cut(s)	62
AclWI	GGATC	2 cut(s)	306, 1180
AcoI	YGGCCR	3 cut(s)	319, 390, 834
AcsI	RAATTY	1 cut(s)	468
AcuI	CTGAAG	2 cut(s)	1107, 1254
AfaI	GTAC	3 cut(s)	379, 509, 893
AfiI	CCNNNNNNNGG	2 cut(s)	843, 1232
AgsI	TTSAA	6 cut(s)	349, 403, 463, 628, 904, 949
AhdI	GACNNNNNGTC	1 cut(s)	241
AjnI	CCWGG	3 cut(s)	129, 1049, 1276
AluBI	AGCT	2 cut(s)	100, 820
AluI	AGCT	2 cut(s)	100, 820
Alw21I	GWGCWC	2 cut(s)	159, 342
Alw26I	GTCTC	3 cut(s)	154, 495, 557
AlwI	GGATC	2 cut(s)	306, 1180
AlwNI	CAGNNNCTG	1 cut(s)	1277
AoxI	GGCC	5 cut(s)	87, 319, 390, 834, 993
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	468
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AspS9I	GGNCC	3 cut(s)	193, 367, 1081
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	4 cut(s)	619, 665, 1136, 1292
AsuII	TTCGAA	1 cut(s)	431
AvaII	GGWCC	3 cut(s)	193, 367, 1081
BanII	GRGCYC	1 cut(s)	758
Bbv12I	GWGCWC	2 cut(s)	159, 342
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	6 cut(s)	80, 571, 676, 770, 1115, 1147
BceAI	ACGGC	2 cut(s)	185, 334
BciT130I	CCWGG	3 cut(s)	131, 1051, 1278
BclI	TGATCA	1 cut(s)	519
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	3 cut(s)	154, 495, 557
BfmI	CTRYAG	1 cut(s)	1299
BglI	GCCNNNNNGGC	1 cut(s)	327
BisI	GCNGC	7 cut(s)	37, 54, 57, 60, 208, 714, 834
BlsI	GCNGC	7 cut(s)	38, 55, 58, 61, 209, 715, 835
Bme1390I	CCNGG	4 cut(s)	119, 131, 1051, 1278
Bme18I	GGWCC	3 cut(s)	193, 367, 1081
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmgT120I	GGNCC	3 cut(s)	193, 367, 1081
BmiI	GGNNCC	2 cut(s)	755, 1083
BmrFI	CCNGG	4 cut(s)	119, 131, 1051, 1278
BmsI	GCATC	2 cut(s)	909, 1087
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	119
BsaBI	GATNNNNATC	1 cut(s)	518
BsaJI	CCNNGG	5 cut(s)	84, 129, 996, 1203, 1276
BsaWI	WCCGGW	3 cut(s)	102, 931, 1242
Bsc4I	CCNNNNNNNGG	2 cut(s)	843, 1232
Bse1I	ACTGG	1 cut(s)	370
Bse8I	GATNNNNATC	1 cut(s)	518
BseBI	CCWGG	3 cut(s)	131, 1051, 1278
BseDI	CCNNGG	5 cut(s)	84, 129, 996, 1203, 1276
BseGI	GGATG	4 cut(s)	176, 306, 579, 778
BseJI	GATNNNNATC	1 cut(s)	518
BseLI	CCNNNNNNNGG	2 cut(s)	843, 1232
BseMII	CTCAG	2 cut(s)	159, 203
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	4 cut(s)	133, 154, 596, 1079
BseX3I	CGGCCG	1 cut(s)	319
BseXI	GCAGC	1 cut(s)	43
BseYI	CCCAGC	1 cut(s)	1232
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	5 cut(s)	89, 321, 392, 836, 995
BsiEI	CGRYCG	1 cut(s)	322
BsiHKAI	GWGCWC	2 cut(s)	159, 342
BsiSI	CCGG	5 cut(s)	103, 119, 548, 932, 1243
BsiWI	CGTACG	1 cut(s)	507
BslFI	GGGAC	5 cut(s)	205, 241, 1067, 1094, 1259
BslI	CCNNNNNNNGG	2 cut(s)	843, 1232
BsmAI	GTCTC	3 cut(s)	154, 495, 557
BsmBI	CGTCTC	1 cut(s)	557
BsmFI	GGGAC	5 cut(s)	205, 241, 1067, 1094, 1259
BsmI	GAATGC	2 cut(s)	15, 1051
BsnI	GGCC	5 cut(s)	89, 321, 392, 836, 995
Bsp119I	TTCGAA	1 cut(s)	431
Bsp1286I	GDGCHC	3 cut(s)	159, 342, 758
Bsp143I	GATC	4 cut(s)	311, 386, 519, 1172
BspANI	GGCC	5 cut(s)	89, 321, 392, 836, 995
BspCNI	CTCAG	2 cut(s)	158, 202
BspHI	TCATGA	1 cut(s)	1114
BspLI	GGNNCC	2 cut(s)	755, 1083
BspPI	GGATC	2 cut(s)	306, 1180
BspT104I	TTCGAA	1 cut(s)	431
BsrBI	CCGCTC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	5 cut(s)	84, 129, 996, 1203, 1276
BssMI	GATC	4 cut(s)	311, 386, 519, 1172
BssT1I	CCWWGG	3 cut(s)	84, 996, 1203
Bst2UI	CCWGG	3 cut(s)	131, 1051, 1278
Bst4CI	ACNGT	3 cut(s)	438, 568, 1015
Bst6I	CTCTTC	4 cut(s)	651, 902, 1049, 1122
BstBI	TTCGAA	1 cut(s)	431
BstC8I	GCNNGC	3 cut(s)	328, 342, 421
BstDEI	CTNAG	3 cut(s)	145, 189, 1209
BstF5I	GGATG	4 cut(s)	176, 306, 579, 778
BstKTI	GATC	4 cut(s)	314, 389, 522, 1175
BstMAI	GTCTC	3 cut(s)	154, 495, 557
BstMBI	GATC	4 cut(s)	311, 386, 519, 1172
BstMCI	CGRYCG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 59, 327, 1295
BstNI	CCWGG	3 cut(s)	131, 1051, 1278
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	4 cut(s)	117, 129, 1049, 1276
BstSFI	CTRYAG	1 cut(s)	1299
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	1172
BstYI	RGATCY	1 cut(s)	1172
BstZI	CGGCCG	1 cut(s)	319
BsuRI	GGCC	5 cut(s)	89, 321, 392, 836, 995
BtsCI	GGATG	4 cut(s)	176, 306, 579, 778
BtsI	GCAGTG	1 cut(s)	1196
BtsIMutI	CAGTG	1 cut(s)	1196
Cac8I	GCNNGC	3 cut(s)	328, 342, 421
CaiI	CAGNNNCTG	1 cut(s)	1277
CciI	TCATGA	1 cut(s)	1114
Cfr13I	GGNCC	3 cut(s)	193, 367, 1081
Csp6I	GTAC	3 cut(s)	378, 508, 892
CviAII	CATG	3 cut(s)	331, 743, 1115
CviQI	GTAC	3 cut(s)	378, 508, 892
DdeI	CTNAG	3 cut(s)	145, 189, 1209
DpnI	GATC	4 cut(s)	313, 388, 521, 1174
DpnII	GATC	4 cut(s)	311, 386, 519, 1172
DrdI	GACNNNNNNGTC	1 cut(s)	200
DriI	GACNNNNNGTC	1 cut(s)	241
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	3 cut(s)	319, 390, 834
EagI	CGGCCG	1 cut(s)	319
Eam1104I	CTCTTC	4 cut(s)	651, 902, 1049, 1122
Eam1105I	GACNNNNNGTC	1 cut(s)	241
EarI	CTCTTC	4 cut(s)	651, 902, 1049, 1122
EciI	GGCGGA	4 cut(s)	14, 23, 194, 974
EclXI	CGGCCG	1 cut(s)	319
Eco130I	CCWWGG	3 cut(s)	84, 996, 1203
Eco24I	GRGCYC	1 cut(s)	758
Eco47I	GGWCC	3 cut(s)	193, 367, 1081
Eco52I	CGGCCG	1 cut(s)	319
Eco57I	CTGAAG	2 cut(s)	1107, 1254
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRII	CCWGG	3 cut(s)	129, 1049, 1276
EcoT14I	CCWWGG	3 cut(s)	84, 996, 1203
EcoT22I	ATGCAT	1 cut(s)	924
EcoT38I	GRGCYC	1 cut(s)	758
ErhI	CCWWGG	3 cut(s)	84, 996, 1203
Esp3I	CGTCTC	1 cut(s)	557
FaeI	CATG	3 cut(s)	334, 746, 1118
FaqI	GGGAC	5 cut(s)	205, 241, 1067, 1094, 1259
FatI	CATG	3 cut(s)	330, 742, 1114
FauI	CCCGC	2 cut(s)	188, 532
FbaI	TGATCA	1 cut(s)	519
Fnu4HI	GCNGC	7 cut(s)	37, 54, 57, 60, 208, 714, 834
FokI	GGATG	4 cut(s)	163, 293, 586, 785
FriOI	GRGCYC	1 cut(s)	758
Fsp4HI	GCNGC	7 cut(s)	37, 54, 57, 60, 208, 714, 834
GluI	GCNGC	7 cut(s)	37, 54, 57, 60, 208, 714, 834
GsaI	CCCAGC	1 cut(s)	1236
HaeIII	GGCC	5 cut(s)	89, 321, 392, 836, 995
HapII	CCGG	5 cut(s)	103, 119, 548, 932, 1243
Hin1II	CATG	3 cut(s)	334, 746, 1118
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	4 cut(s)	242, 254, 514, 1006
HpaII	CCGG	5 cut(s)	103, 119, 548, 932, 1243
HphI	GGTGA	4 cut(s)	619, 665, 1136, 1292
Hpy166II	GTNNAC	3 cut(s)	45, 300, 797
Hpy188I	TCNGA	7 cut(s)	109, 154, 311, 384, 474, 519, 1011
Hpy188III	TCNNGA	5 cut(s)	191, 494, 844, 904, 1115
Hpy8I	GTNNAC	3 cut(s)	45, 300, 797
HpyAV	CCTTC	7 cut(s)	256, 547, 580, 685, 785, 880, 982
HpyCH4III	ACNGT	3 cut(s)	438, 568, 1015
HpyCH4V	TGCA	3 cut(s)	15, 423, 922
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 59, 327, 1295
HpyF3I	CTNAG	3 cut(s)	145, 189, 1209
Hsp92II	CATG	3 cut(s)	334, 746, 1118
Ksp22I	TGATCA	1 cut(s)	519
Kzo9I	GATC	4 cut(s)	311, 386, 519, 1172
LmnI	GCTCC	2 cut(s)	105, 753
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	2 cut(s)	909, 1087
MaeIII	GTNAC	4 cut(s)	598, 607, 1132, 1261
MalI	GATC	4 cut(s)	313, 388, 521, 1174
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	4 cut(s)	311, 386, 519, 1172
MflI	RGATCY	1 cut(s)	1172
MhlI	GDGCHC	3 cut(s)	159, 342, 758
MluCI	AATT	3 cut(s)	403, 455, 468
MlyI	GAGTC	2 cut(s)	251, 263
MmeI	TCCRAC	1 cut(s)	786
Mph1103I	ATGCAT	1 cut(s)	924
MseI	TTAA	2 cut(s)	822, 939
MslI	CAYNNNNRTG	2 cut(s)	747, 1119
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	5 cut(s)	103, 119, 548, 932, 1243
MspR9I	CCNGG	4 cut(s)	119, 131, 1051, 1278
Mva1269I	GAATGC	2 cut(s)	15, 1051
MvaI	CCWGG	3 cut(s)	131, 1051, 1278
MwoI	GCNNNNNNNGC	4 cut(s)	33, 59, 327, 1295
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	4 cut(s)	311, 386, 519, 1172
NlaIII	CATG	3 cut(s)	334, 746, 1118
NlaIV	GGNNCC	2 cut(s)	755, 1083
NmeAIII	GCCGAG	2 cut(s)	347, 812
NmuCI	GTSAC	1 cut(s)	607
NsiI	ATGCAT	1 cut(s)	924
NspI	RCATGY	1 cut(s)	334
NspV	TTCGAA	1 cut(s)	431
PagI	TCATGA	1 cut(s)	1114
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PctI	GAATGC	2 cut(s)	15, 1051
PfeI	GAWTC	2 cut(s)	514, 1006
Pfl23II	CGTACG	1 cut(s)	507
PkrI	GCNGC	7 cut(s)	38, 55, 58, 61, 209, 715, 835
PleI	GAGTC	2 cut(s)	250, 262
PpsI	GAGTC	2 cut(s)	250, 262
PpuMI	RGGWCCY	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	193
Psp6I	CCWGG	3 cut(s)	129, 1049, 1276
PspFI	CCCAGC	1 cut(s)	1232
PspGI	CCWGG	3 cut(s)	129, 1049, 1276
PspLI	CGTACG	1 cut(s)	507
PspN4I	GGNNCC	2 cut(s)	755, 1083
PspPI	GGNCC	3 cut(s)	193, 367, 1081
PspPPI	RGGWCCY	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	1277
PsuI	RGATCY	1 cut(s)	1172
RsaI	GTAC	3 cut(s)	379, 509, 893
RsaNI	GTAC	3 cut(s)	378, 508, 892
RseI	CAYNNNNRTG	2 cut(s)	747, 1119
SaqAI	TTAA	2 cut(s)	822, 939
SatI	GCNGC	7 cut(s)	37, 54, 57, 60, 208, 714, 834
Sau3AI	GATC	4 cut(s)	311, 386, 519, 1172
Sau96I	GGNCC	3 cut(s)	193, 367, 1081
SchI	GAGTC	2 cut(s)	251, 263
ScrFI	CCNGG	4 cut(s)	119, 131, 1051, 1278
SduI	GDGCHC	3 cut(s)	159, 342, 758
SfaNI	GCATC	2 cut(s)	909, 1087
SfcI	CTRYAG	1 cut(s)	1299
SfuI	TTCGAA	1 cut(s)	431
SinI	GGWCC	3 cut(s)	193, 367, 1081
SmiMI	CAYNNNNRTG	2 cut(s)	747, 1119
Sse9I	AATT	3 cut(s)	403, 455, 468
StyD4I	CCNGG	4 cut(s)	117, 129, 1049, 1276
StyI	CCWWGG	3 cut(s)	84, 996, 1203
TaaI	ACNGT	3 cut(s)	438, 568, 1015
TaqI	TCGA	5 cut(s)	240, 252, 336, 431, 1095
TasI	AATT	3 cut(s)	403, 455, 468
TauI	GCSGC	6 cut(s)	39, 56, 62, 210, 716, 836
TfiI	GAWTC	2 cut(s)	514, 1006
Tru1I	TTAA	2 cut(s)	822, 939
Tru9I	TTAA	2 cut(s)	822, 939
TscAI	CASTG	1 cut(s)	1196
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	3 cut(s)	238, 480, 986
TspRI	CASTG	1 cut(s)	1196
VpaK11BI	GGWCC	3 cut(s)	193, 367, 1081
XapI	RAATTY	1 cut(s)	468
XceI	RCATGY	1 cut(s)	334
Zsp2I	ATGCAT	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.