Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0014081

Physical Location & Seq

Genomic Coordinates Forward (+)

16267012 .. 16268793

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G151800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGTCATCTTCAATTCCTCTCCGCCATCTCCGCCAGCTCTCCACCACCGCTAAATCTTCAATCTCCATCTCACAAGCGAAGTCCAAGCTCCGAACAGAGTACGACCCTGACAAAGCCCTAGAGATTTACTCCTCTGTCTCCGAACACTACTCGACTCCTACCTCCTCTCGCTATGCTCAGGACCTCACCGTTCGTCGCCTCGCCAAGTCTCATCGCTTCGCTGACATCGAAAAATTAATTGAATCTCACAAAAATGACCCAAAAATCACCCAAGAGCCTTTCTTGTGCACCCTCATCCGATCGTACGGCCGTTCCGGCATGTTCGACCACGCAATGAGGACCTTTGATCAAATGGACCAGCTGGGTACTCCGAGATCTTCACTATCCTTCAATGCTCTGTTGACTGCGTGCACCAATTCGAAACAGTTTGAAAAAGTCCCCCAGCTGTTCGATGAAATTCCCAACAAGCATGGTGTCTCCCCCGATAAAGTGTCGTATGGTATATTAATCAAGTCGTATTGCGCGGCTGATAAGCCCGAGAAGGCGATTGAGACTCTGAGGTTGATGGAGGAGAAGGGTATTGAGATAACTGCAGTGACGTTCACCACAATATTTAATGCTCTGTATAAGAAAGGCAATGGCGAAGAGGCTGAGAACTTGTGGAATGAGATGGTGAAGAAGGGTATTGAGGTTGATGCTGCCGCTTATAATGTTAAGATTATGTATGTCCATGGCGGGAACCCGGACAATGTGAAAGCCTTGATCGAAGAAATGGCGAATGCCGGGCTGAAACCCGACACTATTAGTTACAATTACTTGATGACTTGTTATTGCAGGAATGAGATGATGGAAGAAGCTGTCAAGGTTTATGAGGGGTTGGAGGGAAATGCTTGTAATCCGAATGCTGCAACTTTTAGGACTCTGATATTTTATCTGTGTAGTAGTGAGGATTATGATAAGGCGTATAAGATTTTCAAGAGGAGTGTGGAGGTGCATAAGATCCCCGACTTTAATACGATGAGACATTTGGTTGAAGGATTGGTGAAGAAGAAGAAGATGAAGGAGGCCAAGGGATTGATACGCACAATTAAGAAGAAGTTCCCTCCTAATCTTTTGGTTGCCTGGAAGAAAGTGGAAGAGGGTCTTGGTTTGGCTTCTTCTGATAGGAATGCTTCTTCGGTCCCTGATAACGACGAGGCTAAGGAGGCTACAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

406

Amino Acids

45.65

Weight (kDa)

8.58

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18520 AT4G36680
fragaria_vesca	FvH4_1g13650
malus_domestica	MD02G1151200.v1.1 MD15G1265700.v1.1
prunus_persica	Prupe.7G151800_v2.0.a1
pyrus_communis	pycom02g11870 pycom15g23140
rosa_chinensis	RchiOBHm_Chr2g0102001
rosa_laevigata	RLG00000017125
rosa_multiflora	Rmu_co8487067.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140840
rosa_samantha	Rh2AG151900 Rh2BG157300 Rh2CG157300 Rh2DG157400
rosa_wichuraiana	Rw2G011860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	708
AccII	CGCG	1 cut(s)	524
AciI	CCGC	6 cut(s)	22, 31, 48, 524, 702, 735
AclWI	GGATC	1 cut(s)	994
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	456
AfaI	GTAC	3 cut(s)	101, 305, 367
AgsI	TTSAA	7 cut(s)	12, 60, 242, 391, 431, 976, 1034
AjnI	CCWGG	1 cut(s)	1121
AjuI	GAANNNNNNNTTGG	2 cut(s)	1128, 1160
AluBI	AGCT	5 cut(s)	37, 88, 361, 445, 857
AluI	AGCT	5 cut(s)	37, 88, 361, 445, 857
Alw21I	GWGCWC	2 cut(s)	290, 413
Alw26I	GTCTC	5 cut(s)	142, 213, 481, 545, 1015
Alw44I	GTGCAC	2 cut(s)	286, 409
AlwI	GGATC	1 cut(s)	994
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	2 cut(s)	307, 1065
ApaLI	GTGCAC	2 cut(s)	286, 409
ApeKI	GCWGC	2 cut(s)	698, 905
ApoI	RAATTY	1 cut(s)	456
AseI	ATTAAT	2 cut(s)	236, 506
Asp700I	GAANNNNTTC	1 cut(s)	1097
AspLEI	GCGC	1 cut(s)	524
AspS9I	GGNCC	4 cut(s)	181, 339, 355, 1180
AsuC2I	CCSGG	2 cut(s)	743, 784
AsuHPI	GGTGA	5 cut(s)	178, 259, 595, 685, 1054
AsuII	TTCGAA	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	4 cut(s)	181, 339, 355, 1180
BaeGI	GKGCMC	2 cut(s)	290, 413
Bbv12I	GWGCWC	2 cut(s)	290, 413
BbvI	GCAGC	2 cut(s)	685, 892
BccI	CCATC	5 cut(s)	33, 74, 559, 664, 841
BceAI	ACGGC	2 cut(s)	294, 322
BciT130I	CCWGG	1 cut(s)	1123
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	2 cut(s)	743, 784
BcoDI	GTCTC	5 cut(s)	142, 213, 481, 545, 1015
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	2 cut(s)	591, 1209
BglI	GCCNNNNNGGC	1 cut(s)	315
BglII	AGATCT	1 cut(s)	374
BisI	GCNGC	4 cut(s)	525, 699, 702, 906
BlsI	GCNGC	4 cut(s)	526, 700, 703, 907
Bme1390I	CCNGG	3 cut(s)	743, 784, 1123
Bme18I	GGWCC	4 cut(s)	181, 339, 355, 1180
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	4 cut(s)	181, 339, 355, 1180
BmiI	GGNNCC	2 cut(s)	740, 1182
BmrFI	CCNGG	3 cut(s)	743, 784, 1123
BmsI	GCATC	1 cut(s)	685
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
Bpu10I	CCTNAGC	2 cut(s)	177, 1200
Bpu14I	TTCGAA	1 cut(s)	419
BpuMI	CCSGG	2 cut(s)	743, 784
BsaJI	CCNNGG	2 cut(s)	730, 1068
Bse3DI	GCAATG	2 cut(s)	339, 643
BseBI	CCWGG	1 cut(s)	1123
BseDI	CCNNGG	2 cut(s)	730, 1068
BseGI	GGATG	1 cut(s)	294
BseMI	GCAATG	2 cut(s)	339, 643
BseMII	CTCAG	3 cut(s)	191, 548, 642
BseRI	GAGGAG	4 cut(s)	121, 154, 584, 994
BseSI	GKGCMC	2 cut(s)	290, 413
BseX3I	CGGCCG	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	685, 892
BseYI	CCCAGC	2 cut(s)	361, 441
Bsh1236I	CGCG	1 cut(s)	524
Bsh1285I	CGRYCG	2 cut(s)	302, 310
BshFI	GGCC	2 cut(s)	309, 1067
BsiEI	CGRYCG	2 cut(s)	302, 310
BsiHKAI	GWGCWC	2 cut(s)	290, 413
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	3 cut(s)	315, 743, 783
BsiWI	CGTACG	1 cut(s)	303
BslFI	GGGAC	2 cut(s)	422, 1166
BsmAI	GTCTC	5 cut(s)	142, 213, 481, 545, 1015
BsmFI	GGGAC	2 cut(s)	422, 1166
BsmI	GAATGC	3 cut(s)	784, 907, 1174
BsnI	GGCC	2 cut(s)	309, 1067
BsoBI	CYCGRG	1 cut(s)	536
Bsp119I	TTCGAA	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	290, 413
Bsp143I	GATC	5 cut(s)	299, 346, 374, 762, 999
Bsp19I	CCATGG	1 cut(s)	730
BspACI	CCGC	6 cut(s)	22, 31, 48, 524, 702, 735
BspANI	GGCC	2 cut(s)	309, 1067
BspCNI	CTCAG	3 cut(s)	190, 549, 643
BspFNI	CGCG	1 cut(s)	524
BspLI	GGNNCC	2 cut(s)	740, 1182
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	1 cut(s)	994
BspT104I	TTCGAA	1 cut(s)	419
BsrDI	GCAATG	2 cut(s)	339, 643
BssECI	CCNNGG	2 cut(s)	730, 1068
BssMI	GATC	5 cut(s)	299, 346, 374, 762, 999
BssT1I	CCWWGG	2 cut(s)	730, 1068
Bst2UI	CCWGG	1 cut(s)	1123
Bst4CI	ACNGT	2 cut(s)	190, 426
Bst6I	CTCTTC	2 cut(s)	639, 1131
BstBI	TTCGAA	1 cut(s)	419
BstC8I	GCNNGC	2 cut(s)	35, 409
BstDEI	CTNAG	4 cut(s)	177, 557, 651, 1200
BstDSI	CCRYGG	1 cut(s)	730
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	524
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	5 cut(s)	302, 349, 377, 765, 1002
BstMAI	GTCTC	5 cut(s)	142, 213, 481, 545, 1015
BstMBI	GATC	5 cut(s)	299, 346, 374, 762, 999
BstMCI	CGRYCG	2 cut(s)	302, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 315, 1205
BstNI	CCWGG	1 cut(s)	1123
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	3 cut(s)	741, 782, 1121
BstSFI	CTRYAG	2 cut(s)	591, 1209
BstSLI	GKGCMC	2 cut(s)	290, 413
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	2 cut(s)	685, 892
BstX2I	RGATCY	2 cut(s)	374, 999
BstYI	RGATCY	2 cut(s)	374, 999
BstZI	CGGCCG	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	309, 1067
BtgI	CCRYGG	1 cut(s)	730
BtgZI	GCGATG	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	1 cut(s)	600
Cac8I	GCNNGC	2 cut(s)	35, 409
CfoI	GCGC	1 cut(s)	524
Cfr13I	GGNCC	4 cut(s)	181, 339, 355, 1180
Csp6I	GTAC	3 cut(s)	100, 304, 366
CviAII	CATG	3 cut(s)	319, 470, 731
CviQI	GTAC	3 cut(s)	100, 304, 366
DdeI	CTNAG	4 cut(s)	177, 557, 651, 1200
DpnI	GATC	5 cut(s)	301, 348, 376, 764, 1001
DpnII	GATC	5 cut(s)	299, 346, 374, 762, 999
EaeI	YGGCCR	1 cut(s)	307
EagI	CGGCCG	1 cut(s)	307
Eam1104I	CTCTTC	2 cut(s)	639, 1131
EarI	CTCTTC	2 cut(s)	639, 1131
EciI	GGCGGA	2 cut(s)	11, 20
EclXI	CGGCCG	1 cut(s)	307
Eco130I	CCWWGG	2 cut(s)	730, 1068
Eco47I	GGWCC	4 cut(s)	181, 339, 355, 1180
Eco52I	CGGCCG	1 cut(s)	307
Eco88I	CYCGRG	1 cut(s)	536
EcoO109I	RGGNCCY	2 cut(s)	181, 339
EcoRII	CCWGG	1 cut(s)	1121
EcoT14I	CCWWGG	2 cut(s)	730, 1068
ErhI	CCWWGG	2 cut(s)	730, 1068
FaeI	CATG	3 cut(s)	322, 473, 734
FalI	AAGNNNNNCTT	2 cut(s)	1128, 1160
FaqI	GGGAC	2 cut(s)	422, 1166
FatI	CATG	3 cut(s)	318, 469, 730
FauI	CCCGC	1 cut(s)	728
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	4 cut(s)	525, 699, 702, 906
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	4 cut(s)	525, 699, 702, 906
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	4 cut(s)	525, 699, 702, 906
GsaI	CCCAGC	2 cut(s)	365, 445
HaeIII	GGCC	2 cut(s)	309, 1067
HapII	CCGG	3 cut(s)	315, 743, 783
HhaI	GCGC	1 cut(s)	524
Hin1II	CATG	3 cut(s)	322, 473, 734
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	4 cut(s)	154, 242, 553, 919
HpaII	CCGG	3 cut(s)	315, 743, 783
HphI	GGTGA	5 cut(s)	178, 259, 595, 685, 1054
Hpy166II	GTNNAC	4 cut(s)	288, 402, 411, 603
Hpy188I	TCNGA	8 cut(s)	92, 142, 299, 372, 558, 900, 924, 1162
Hpy188III	TCNNGA	2 cut(s)	179, 976
Hpy8I	GTNNAC	4 cut(s)	288, 402, 411, 603
Hpy99I	CGWCG	2 cut(s)	198, 1196
HpyAV	CCTTC	6 cut(s)	397, 535, 568, 673, 1028, 1054
HpyCH4III	ACNGT	2 cut(s)	190, 426
HpyCH4IV	ACGT	1 cut(s)	599
HpyCH4V	TGCA	6 cut(s)	288, 411, 593, 834, 908, 994
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 315, 1205
HpyF3I	CTNAG	4 cut(s)	177, 557, 651, 1200
HpySE526I	ACGT	1 cut(s)	599
Hsp92II	CATG	3 cut(s)	322, 473, 734
HspAI	GCGC	1 cut(s)	522
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	5 cut(s)	299, 346, 374, 762, 999
LmnI	GCTCC	1 cut(s)	93
Lsp1109I	GCAGC	2 cut(s)	685, 892
LweI	GCATC	1 cut(s)	685
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	1 cut(s)	599
MaeIII	GTNAC	2 cut(s)	595, 806
MalI	GATC	5 cut(s)	301, 348, 376, 764, 1001
MboI	GATC	5 cut(s)	299, 346, 374, 762, 999
MflI	RGATCY	2 cut(s)	374, 999
MhlI	GDGCHC	2 cut(s)	290, 413
MluCI	AATT	7 cut(s)	12, 233, 237, 415, 456, 811, 1086
MlyI	GAGTC	3 cut(s)	148, 547, 913
MmeI	TCCRAC	1 cut(s)	858
MroXI	GAANNNNTTC	1 cut(s)	1097
MseI	TTAA	6 cut(s)	236, 506, 615, 714, 1011, 1089
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	2 cut(s)	361, 445
MspI	CCGG	3 cut(s)	315, 743, 783
MspR9I	CCNGG	3 cut(s)	743, 784, 1123
Mva1269I	GAATGC	3 cut(s)	784, 907, 1174
MvaI	CCWGG	1 cut(s)	1123
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	3 cut(s)	30, 315, 1205
NciI	CCSGG	2 cut(s)	743, 784
NcoI	CCATGG	1 cut(s)	730
NdeII	GATC	5 cut(s)	299, 346, 374, 762, 999
NlaIII	CATG	3 cut(s)	322, 473, 734
NlaIV	GGNNCC	2 cut(s)	740, 1182
NmuCI	GTSAC	1 cut(s)	595
NspI	RCATGY	1 cut(s)	322
NspV	TTCGAA	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PctI	GAATGC	3 cut(s)	784, 907, 1174
PdmI	GAANNNNTTC	1 cut(s)	1097
PfeI	GAWTC	1 cut(s)	242
Pfl23II	CGTACG	1 cut(s)	303
PkrI	GCNGC	4 cut(s)	526, 700, 703, 907
Ple19I	CGATCG	1 cut(s)	302
PleI	GAGTC	3 cut(s)	148, 547, 913
PpsI	GAGTC	3 cut(s)	148, 547, 913
PpuMI	RGGWCCY	2 cut(s)	181, 339
PshBI	ATTAAT	2 cut(s)	236, 506
PsiI	TTATAA	1 cut(s)	708
Psp5II	RGGWCCY	2 cut(s)	181, 339
Psp6I	CCWGG	1 cut(s)	1121
PspFI	CCCAGC	2 cut(s)	361, 441
PspGI	CCWGG	1 cut(s)	1121
PspLI	CGTACG	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	740, 1182
PspPI	GGNCC	4 cut(s)	181, 339, 355, 1180
PspPPI	RGGWCCY	2 cut(s)	181, 339
PstI	CTGCAG	1 cut(s)	595
PsuI	RGATCY	2 cut(s)	374, 999
PvuI	CGATCG	1 cut(s)	302
PvuII	CAGCTG	2 cut(s)	361, 445
RsaI	GTAC	3 cut(s)	101, 305, 367
RsaNI	GTAC	3 cut(s)	100, 304, 366
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	6 cut(s)	236, 506, 615, 714, 1011, 1089
SatI	GCNGC	4 cut(s)	525, 699, 702, 906
Sau3AI	GATC	5 cut(s)	299, 346, 374, 762, 999
Sau96I	GGNCC	4 cut(s)	181, 339, 355, 1180
SchI	GAGTC	3 cut(s)	148, 547, 913
ScrFI	CCNGG	3 cut(s)	743, 784, 1123
SduI	GDGCHC	2 cut(s)	290, 413
SfaNI	GCATC	1 cut(s)	685
SfcI	CTRYAG	2 cut(s)	591, 1209
SfuI	TTCGAA	1 cut(s)	419
SinI	GGWCC	4 cut(s)	181, 339, 355, 1180
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	7 cut(s)	12, 233, 237, 415, 456, 811, 1086
SsiI	CCGC	6 cut(s)	22, 31, 48, 524, 702, 735
SspI	AATATT	1 cut(s)	612
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	3 cut(s)	741, 782, 1121
StyI	CCWWGG	2 cut(s)	730, 1068
TaaI	ACNGT	2 cut(s)	190, 426
TaiI	ACGT	1 cut(s)	602
TaqI	TCGA	6 cut(s)	152, 228, 324, 419, 450, 765
TaqII	GACCGA	1 cut(s)	1168
TasI	AATT	7 cut(s)	12, 233, 237, 415, 456, 811, 1086
TauI	GCSGC	2 cut(s)	527, 704
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	6 cut(s)	236, 506, 615, 714, 1011, 1089
Tru9I	TTAA	6 cut(s)	236, 506, 615, 714, 1011, 1089
TscAI	CASTG	1 cut(s)	600
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	2 cut(s)	698, 905
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	2 cut(s)	468, 1073
TspRI	CASTG	1 cut(s)	600
VneI	GTGCAC	2 cut(s)	286, 409
VpaK11BI	GGWCC	4 cut(s)	181, 339, 355, 1180
VspI	ATTAAT	2 cut(s)	236, 506
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	1097
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.