FvH4_1g13650

Pentatricopeptide repeat-containing protein At4g36680

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014081
Physical Location & Seq
Reverse (-)
7520880 .. 7522265
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13650.t1

Sequence Viewer

Length: 1386 bp
ATGTCCTCCTCCATTTCAATCCGCCACATCCGCCGCCTCTCCACCACCGCGGCCCAATCCTCCATCTCCATATCCAAAGCCAAGTCCAAGCTCCGCTCCGAGCACGACCCTGACAAAGCCCTCGAAATCTACTCATCCGTCTCCGACCGCTACTCCTCCCCCACCTCATCTCGCTACACTCAGGACATCGCCGTCCGCCGCCTCGCCAAGTCCCACCGCTTCGCCGACATCGAGTCCTTCATCGAGTCCCACAAAAATGACCCCAAGATCAAACAAGAGCCCTACTTGTCCACCCTGATCCGATCCTACGGCCGAGCTGGGATGTTCGACCACGCATTGAAGACCTATGAGCAGATGGACCAGCTCGGTACTCCGCGTTCATCAATCTCTTTCAATTCCTTGCTTACAGCTTGCAATCTTTCTAAACACTTTGATAGAGTTCCTCAGTTTTTCAATGAAATTCCGATTAAGTATAATGTCTCTCCTGATAAAGTTTCGTATGGGATTCTTATCAAGTCATTTTGCGAAGCTGGGAAGCCGGAGGAGGCGATTGAGACGGTTAGGGTGATGGAGGAAAAGGGGGTGGAGGTGACTGCGGTGACGTTTACCACTATTTTCAATGCTTTGTATAAAAAGGGGAATAAGGAGGAGGCTGAGAAGCTGTGGGATGAGATGGTGGAGAAGGGTTGTGAGGTTGATGTTGCGGCGTATAATGTGAAGATTATGTATGCTCATGTCAATGGGAGCCCTGAAGATGTGAAGGCTTTGATTGATGAGATGAGTGGTGCAGGGTTGAAGCCTGATGCTATTAGCTACACTTACTTGATGACTTGTTATTGCAGGTGTGGGATGATGGAGGAGGCGGAGAAGGTTTACAAGGGGTTGGAGACAAATAAGCTTAATCCTAATGCAGCGACTTTTAGGACTTTGGTGTTTTATCTTTGTAAGAATGAGTGTTTTGAGAGGGCGTACAGGGTTTTCAAGAAGAGTGTGGAGATGCGTAAGATTCCGGATTTCAATACTTTGAGGTTTTTGGCGGAAGGATTGATGAAGAAAAATATGAGGAAGGAAGCCAAGGGGTTGATTCGGACAGTGAAGAAGAAGTTTCCTCCTAATGTTTTGAATGCGTGGAAGAAAGTGGAGGAGGGTCTTGGTTTGGTGCCTGATGAACTCGATTCTTCATGTGTCCCTCATGATGATGGTGAAGAAGTTACATCATCATCAACGGGAATTGATGGAGAGAAACAAGGGCCTGGAAATAGAAAGCCGTGGAAGAAGCCGAAGGGTAAGAAGAGGTTTCCTCCTAATGCCGGGAATGATAGGAAGAAATTGGATTCTGTTACTTCTTCAGTCCCTGATAATAGTGCTAAAGAGGCTACAGGATGA

Protein Analysis

462

Amino Acids

51.88

Weight (kDa)

9.03

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 98 - 138 7.5e-06 PPR repeat family
PPR_long PF17177 110 - 220 8.9e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 127 - 175 9.6e-06 PPR repeat family
PPR_1 PF12854 159 - 191 2.5e-08 PPR repeat
PPR_2 PF13041 162 - 211 1.3e-11 PPR repeat family
TPR_24 PF23276 163 - 245 7.3e-11 Fungal tetratrico peptide repeats
PPR PF01535 165 - 195 4.2e-06 PPR repeat
PPR_3 PF13812 188 - 239 1.5e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 200 - 239 2.2e-10 PPR repeat family
PPR PF01535 200 - 230 3.1e-07 PPR repeat
PPR_2 PF13041 233 - 281 3.2e-07 PPR repeat family
PPR_3 PF13812 256 - 310 3.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 264 - 291 3.9e-07 PPR repeat
PPR_2 PF13041 267 - 316 3.8e-10 PPR repeat family
PPR PF01535 270 - 296 8.5e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18520 AT4G36680
fragaria_vesca FvH4_1g13650
malus_domestica MD02G1151200.v1.1 MD15G1265700.v1.1
prunus_persica Prupe.7G151800_v2.0.a1
pyrus_communis pycom02g11870 pycom15g23140
rosa_chinensis RchiOBHm_Chr2g0102001
rosa_laevigata RLG00000017125
rosa_multiflora Rmu_co8487067.1_g000001
rosa_roxburghii Rroxscaffold_2G00140840
rosa_samantha Rh2AG151900 Rh2BG157300 Rh2CG157300 Rh2DG157400
rosa_wichuraiana Rw2G011860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 831
AasI GACNNNNNNGTC 1 cut(s) 191
Acc36I ACCTGC 1 cut(s) 831
AccB1I GGYRCC 1 cut(s) 1159
AccBSI CCGCTC 1 cut(s) 96
AccII CGCG 2 cut(s) 50, 376
AccIII TCCGGA 1 cut(s) 1009
AclWI GGATC 2 cut(s) 292, 297
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 1 cut(s) 459
AcuI CTGAAG 2 cut(s) 771, 1332
AfaI GTAC 2 cut(s) 370, 971
AfiI CCNNNNNNNGG 1 cut(s) 1310
AgsI TTSAA 9 cut(s) 18, 340, 394, 454, 619, 796, 982, 1018, 1123
AhdI GACNNNNNGTC 1 cut(s) 232
AjnI CCWGG 1 cut(s) 1252
AluBI AGCT 8 cut(s) 91, 317, 364, 410, 530, 661, 813, 898
AluI AGCT 8 cut(s) 91, 317, 364, 410, 530, 661, 813, 898
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 4 cut(s) 145, 484, 548, 881
AlwI GGATC 2 cut(s) 292, 297
AlwNI CAGNNNCTG 1 cut(s) 1355
Aor13HI TCCGGA 1 cut(s) 1009
AoxI GGCC 3 cut(s) 51, 310, 1250
ApeKI GCWGC 1 cut(s) 911
ApoI RAATTY 1 cut(s) 459
AspS9I GGNCC 3 cut(s) 52, 358, 1250
AsuC2I CCSGG 1 cut(s) 1312
AsuHPI GGTGA 4 cut(s) 577, 601, 610, 1214
AvaII GGWCC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 1159
BanII GRGCYC 2 cut(s) 282, 749
BbsI GAAGAC 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 923
BccI CCATC 7 cut(s) 71, 349, 562, 667, 847, 1193, 1229
BceAI ACGGC 3 cut(s) 176, 325, 1252
BciT130I CCWGG 1 cut(s) 1254
BcnI CCSGG 1 cut(s) 1312
BcoDI GTCTC 4 cut(s) 145, 484, 548, 881
BfmI CTRYAG 1 cut(s) 1377
BfuAI ACCTGC 1 cut(s) 831
BisI GCNGC 5 cut(s) 34, 51, 199, 705, 912
BlsI GCNGC 5 cut(s) 35, 52, 200, 706, 913
Bme1390I CCNGG 2 cut(s) 1254, 1312
Bme18I GGWCC 1 cut(s) 358
BmeRI GACNNNNNGTC 1 cut(s) 232
BmgT120I GGNCC 3 cut(s) 52, 358, 1250
BmiI GGNNCC 2 cut(s) 746, 1161
BmrFI CCNGG 2 cut(s) 1254, 1312
BmsI GCATC 2 cut(s) 793, 987
BpiI GAAGAC 1 cut(s) 347
BplI GAGNNNNNCTC 2 cut(s) 1285, 1317
BpuMI CCSGG 1 cut(s) 1312
BsaBI GATNNNNATC 1 cut(s) 509
BsaJI CCNNGG 3 cut(s) 48, 1074, 1268
BsaWI WCCGGW 1 cut(s) 1009
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 1310
Bse8I GATNNNNATC 1 cut(s) 509
BseAI TCCGGA 1 cut(s) 1009
BseBI CCWGG 1 cut(s) 1254
BseDI CCNNGG 3 cut(s) 48, 1074, 1268
BseGI GGATG 5 cut(s) 27, 134, 327, 673, 855
BseJI GATNNNNATC 1 cut(s) 509
BseLI CCNNNNNNNGG 1 cut(s) 1310
BseMII CTCAG 3 cut(s) 194, 458, 645
BseRI GAGGAG 5 cut(s) 145, 557, 662, 872, 1157
BseX3I CGGCCG 1 cut(s) 310
BseXI GCAGC 1 cut(s) 923
BseYI CCCAGC 2 cut(s) 317, 530
BsgI GTGCAG 1 cut(s) 807
Bsh1236I CGCG 2 cut(s) 50, 376
Bsh1285I CGRYCG 2 cut(s) 148, 313
BshFI GGCC 3 cut(s) 53, 312, 1252
BshNI GGYRCC 1 cut(s) 1159
BsiEI CGRYCG 2 cut(s) 148, 313
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 3 cut(s) 539, 1010, 1311
BslFI GGGAC 4 cut(s) 196, 232, 1172, 1337
BslI CCNNNNNNNGG 1 cut(s) 1310
BsmAI GTCTC 4 cut(s) 145, 484, 548, 881
BsmBI CGTCTC 2 cut(s) 145, 548
BsmFI GGGAC 4 cut(s) 196, 232, 1172, 1337
BsmI GAATGC 1 cut(s) 1129
BsnI GGCC 3 cut(s) 53, 312, 1252
Bsp1286I GDGCHC 3 cut(s) 105, 282, 749
Bsp13I TCCGGA 1 cut(s) 1009
Bsp143I GATC 3 cut(s) 267, 297, 302
BspANI GGCC 3 cut(s) 53, 312, 1252
BspCNI CTCAG 3 cut(s) 193, 457, 646
BspEI TCCGGA 1 cut(s) 1009
BspFNI CGCG 2 cut(s) 50, 376
BspHI TCATGA 1 cut(s) 1192
BspLI GGNNCC 2 cut(s) 746, 1161
BspMI ACCTGC 1 cut(s) 831
BspPI GGATC 2 cut(s) 292, 297
BspT107I GGYRCC 1 cut(s) 1159
BsrBI CCGCTC 1 cut(s) 96
BssECI CCNNGG 3 cut(s) 48, 1074, 1268
BssMI GATC 3 cut(s) 267, 297, 302
BssT1I CCWWGG 1 cut(s) 1074
Bst2UI CCWGG 1 cut(s) 1254
Bst4CI ACNGT 2 cut(s) 559, 1093
Bst6I CTCTTC 2 cut(s) 980, 1286
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 3 cut(s) 180, 444, 654
BstDSI CCRYGG 2 cut(s) 48, 1268
BstF5I GGATG 5 cut(s) 27, 134, 327, 673, 855
BstFNI CGCG 2 cut(s) 50, 376
BstKTI GATC 3 cut(s) 270, 300, 305
BstMAI GTCTC 4 cut(s) 145, 484, 548, 881
BstMBI GATC 3 cut(s) 267, 297, 302
BstMCI CGRYCG 2 cut(s) 148, 313
BstMWI GCNNNNNNNGC 2 cut(s) 30, 1373
BstNI CCWGG 1 cut(s) 1254
BstSCI CCNGG 2 cut(s) 1252, 1310
BstSFI CTRYAG 1 cut(s) 1377
BstUI CGCG 2 cut(s) 50, 376
BstV1I GCAGC 1 cut(s) 923
BstV2I GAAGAC 1 cut(s) 347
BstZI CGGCCG 1 cut(s) 310
BsuRI GGCC 3 cut(s) 53, 312, 1252
BtgI CCRYGG 2 cut(s) 48, 1268
BtgZI GCGATG 1 cut(s) 172
BtsCI GGATG 5 cut(s) 27, 134, 327, 673, 855
BtsIMutI CAGTG 1 cut(s) 1098
BveI ACCTGC 1 cut(s) 831
Cac8I GCNNGC 1 cut(s) 412
CaiI CAGNNNCTG 1 cut(s) 1355
CciI TCATGA 1 cut(s) 1192
Cfr13I GGNCC 3 cut(s) 52, 358, 1250
Cfr42I CCGCGG 1 cut(s) 51
Csp6I GTAC 2 cut(s) 369, 970
CviAII CATG 3 cut(s) 734, 1182, 1193
CviQI GTAC 2 cut(s) 369, 970
DdeI CTNAG 3 cut(s) 180, 444, 654
DpnI GATC 3 cut(s) 269, 299, 304
DpnII GATC 3 cut(s) 267, 297, 302
DrdI GACNNNNNNGTC 1 cut(s) 191
DriI GACNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 310
EagI CGGCCG 1 cut(s) 310
Eam1104I CTCTTC 2 cut(s) 980, 1286
Eam1105I GACNNNNNGTC 1 cut(s) 232
EarI CTCTTC 2 cut(s) 980, 1286
EciI GGCGGA 5 cut(s) 11, 20, 185, 878, 1052
EclXI CGGCCG 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 1074
Eco24I GRGCYC 2 cut(s) 282, 749
Eco47I GGWCC 1 cut(s) 358
Eco52I CGGCCG 1 cut(s) 310
Eco57I CTGAAG 2 cut(s) 771, 1332
EcoO109I RGGNCCY 1 cut(s) 1250
EcoRII CCWGG 1 cut(s) 1252
EcoT14I CCWWGG 1 cut(s) 1074
EcoT38I GRGCYC 2 cut(s) 282, 749
ErhI CCWWGG 1 cut(s) 1074
Esp3I CGTCTC 2 cut(s) 145, 548
FaeI CATG 3 cut(s) 737, 1185, 1196
FaqI GGGAC 4 cut(s) 196, 232, 1172, 1337
FatI CATG 3 cut(s) 733, 1181, 1192
Fnu4HI GCNGC 5 cut(s) 34, 51, 199, 705, 912
FokI GGATG 5 cut(s) 14, 121, 334, 680, 862
FriOI GRGCYC 2 cut(s) 282, 749
Fsp4HI GCNGC 5 cut(s) 34, 51, 199, 705, 912
GluI GCNGC 5 cut(s) 34, 51, 199, 705, 912
GsaI CCCAGC 2 cut(s) 321, 534
HaeIII GGCC 3 cut(s) 53, 312, 1252
HapII CCGG 3 cut(s) 539, 1010, 1311
Hin1II CATG 3 cut(s) 737, 1185, 1196
HindIII AAGCTT 1 cut(s) 896
HinfI GANTC 7 cut(s) 233, 245, 505, 1006, 1084, 1175, 1334
HpaII CCGG 3 cut(s) 539, 1010, 1311
HphI GGTGA 4 cut(s) 577, 601, 610, 1214
Hpy166II GTNNAC 3 cut(s) 291, 606, 874
Hpy188I TCNGA 5 cut(s) 100, 145, 302, 465, 1089
Hpy188III TCNNGA 5 cut(s) 182, 485, 982, 1010, 1193
Hpy8I GTNNAC 3 cut(s) 291, 606, 874
HpyAV CCTTC 7 cut(s) 247, 676, 754, 862, 1034, 1060, 1276
HpyCH4III ACNGT 2 cut(s) 559, 1093
HpyCH4IV ACGT 1 cut(s) 602
HpyCH4V TGCA 4 cut(s) 414, 788, 840, 911
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 1373
HpyF3I CTNAG 3 cut(s) 180, 444, 654
HpySE526I ACGT 1 cut(s) 602
Hsp92II CATG 3 cut(s) 737, 1185, 1196
Kpn2I TCCGGA 1 cut(s) 1009
KspI CCGCGG 1 cut(s) 51
Kzo9I GATC 3 cut(s) 267, 297, 302
LmnI GCTCC 3 cut(s) 96, 101, 744
Lsp1109I GCAGC 1 cut(s) 923
LweI GCATC 2 cut(s) 793, 987
MaeII ACGT 1 cut(s) 602
MaeIII GTNAC 4 cut(s) 589, 598, 1210, 1339
MalI GATC 3 cut(s) 269, 299, 304
MbiI CCGCTC 1 cut(s) 96
MboI GATC 3 cut(s) 267, 297, 302
MhlI GDGCHC 3 cut(s) 105, 282, 749
MluCI AATT 4 cut(s) 394, 459, 1230, 1328
MlyI GAGTC 2 cut(s) 242, 254
MmeI TCCRAC 2 cut(s) 168, 864
MroI TCCGGA 1 cut(s) 1009
MseI TTAA 2 cut(s) 468, 900
MslI CAYNNNNRTG 3 cut(s) 255, 738, 1197
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 3 cut(s) 539, 1010, 1311
MspR9I CCNGG 2 cut(s) 1254, 1312
Mva1269I GAATGC 1 cut(s) 1129
MvaI CCWGG 1 cut(s) 1254
MvnI CGCG 2 cut(s) 50, 376
MwoI GCNNNNNNNGC 2 cut(s) 30, 1373
NciI CCSGG 1 cut(s) 1312
NdeII GATC 3 cut(s) 267, 297, 302
NlaIII CATG 3 cut(s) 737, 1185, 1196
NlaIV GGNNCC 2 cut(s) 746, 1161
NmeAIII GCCGAG 1 cut(s) 338
NmuCI GTSAC 2 cut(s) 589, 598
PagI TCATGA 1 cut(s) 1192
PaqCI CACCTGC 1 cut(s) 831
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 1 cut(s) 1129
PfeI GAWTC 5 cut(s) 505, 1006, 1084, 1175, 1334
PkrI GCNGC 5 cut(s) 35, 52, 200, 706, 913
PleI GAGTC 2 cut(s) 241, 253
PpsI GAGTC 2 cut(s) 241, 253
Psp6I CCWGG 1 cut(s) 1252
PspFI CCCAGC 2 cut(s) 317, 530
PspGI CCWGG 1 cut(s) 1252
PspN4I GGNNCC 2 cut(s) 746, 1161
PspPI GGNCC 3 cut(s) 52, 358, 1250
PsrI GAACNNNNNNTAC 2 cut(s) 361, 393
PstNI CAGNNNCTG 1 cut(s) 1355
RsaI GTAC 2 cut(s) 370, 971
RsaNI GTAC 2 cut(s) 369, 970
RseI CAYNNNNRTG 3 cut(s) 255, 738, 1197
SacII CCGCGG 1 cut(s) 51
SaqAI TTAA 2 cut(s) 468, 900
SatI GCNGC 5 cut(s) 34, 51, 199, 705, 912
Sau3AI GATC 3 cut(s) 267, 297, 302
Sau96I GGNCC 3 cut(s) 52, 358, 1250
SchI GAGTC 2 cut(s) 242, 254
ScrFI CCNGG 2 cut(s) 1254, 1312
SduI GDGCHC 3 cut(s) 105, 282, 749
SfaNI GCATC 2 cut(s) 793, 987
SfcI CTRYAG 1 cut(s) 1377
Sfr303I CCGCGG 1 cut(s) 51
SgrBI CCGCGG 1 cut(s) 51
SinI GGWCC 1 cut(s) 358
SmiMI CAYNNNNRTG 3 cut(s) 255, 738, 1197
Sse9I AATT 4 cut(s) 394, 459, 1230, 1328
StyD4I CCNGG 2 cut(s) 1252, 1310
StyI CCWWGG 1 cut(s) 1074
TaaI ACNGT 2 cut(s) 559, 1093
TaiI ACGT 1 cut(s) 605
TaqI TCGA 5 cut(s) 123, 231, 243, 327, 1173
TasI AATT 4 cut(s) 394, 459, 1230, 1328
TauI GCSGC 4 cut(s) 36, 53, 201, 707
TfiI GAWTC 5 cut(s) 505, 1006, 1084, 1175, 1334
Tru1I TTAA 2 cut(s) 468, 900
Tru9I TTAA 2 cut(s) 468, 900
TscAI CASTG 1 cut(s) 1098
TseFI GTSAC 2 cut(s) 589, 598
TseI GCWGC 1 cut(s) 911
Tsp45I GTSAC 2 cut(s) 589, 598
TspDTI ATGAA 6 cut(s) 229, 369, 471, 1064, 1170, 1182
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 1 cut(s) 1098
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.