Rmu_co8487067.1_g000001

Pentatricopeptide repeat-containing protein At4g36680

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8487067.1
Physical Location & Seq
Reverse (-)
1001 .. 2389
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8487067.1_g000001.1.cds

Sequence Viewer

Length: 1389 bp
atgtcctcctcctccattccaatccgccacctccgccgcctgtccaccaccgccgctcaatcgtccatctccatttccaaggccaagtcaaagctccggtcagaacacgacccggacaaggccttggaaatctactcctcagtctccgagcactactcatctcccacctcttctcgctatgctcaggacctcgccgtccgccgcctcgccaagtcccaccgcttcgccgacatcgagtccttcatcgagtcccacaaaaacgaccccaaaatcaaacaagagccgtacctgtccaccctcatccgatcctacggccgagcaggcatgttcgagcacgccttgaaaacctatgaccaaatggaccagttgggtactccgagatcggccatttctttcaattctttgcttactgcttgcaatctttcaaaacagtttgataaagtccctcaatttttcactgaaattccgagcaagtatggtgtgtctcctgataaagtgtcgtacgggattctgatcaagtcgttttgcgaagctgggaagccggagaaggcgattgagacggtgcggatgatggaggagaagggcattgaggtaactgcggtgacatttacaactatattcaatgctttgtataagaaaggaaatggtgaagaggctgacaagttgtggaatgagatggtggagaagggttgtgaggttgatgttgcggcgtataatgtgaagattatgtatgctcatgtcaatgggagccccgaagatgtgaaggctttgattgatgaaatcattggcgccgggttgaagccggatgctattagctacaattacttgatgacttgttattgcaggtgtgggatgatggaggaagccgagaaggtttacagggggttggagcttaataagcttaatcctaatgcggccactttcaggactttggtgttttatctctgtaagaatgagtattttgagaaagcgtacagggttttcaagaagagtgtggagatgcataagataccggattttaatactttgaagtttttggcagagggattgatgaagaaaaatatgaggaaggaggccaaggggttgattcggacagttaagaagaagtttcctcctaatgttgtgaatgcctggaagagagtggaggagggtcttggtttggtccctgaagaactcgatgcttcttgtgtccctcatgatgatggtgaagaggttacaccatcatcaaccgggattggtggagagaaccaaggatctgtaaatagaaagcagtggaagaagcccaaggctaagaagtggtttcctcctaatgctgggaatgacaggaagaaagtgagtactgttacttcttcagtccctggtgatagtgctaaagaggctacaggatag

Protein Analysis

462

Amino Acids

51.77

Weight (kDa)

9.05

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18520 AT4G36680
fragaria_vesca FvH4_1g13650
malus_domestica MD02G1151200.v1.1 MD15G1265700.v1.1
prunus_persica Prupe.7G151800_v2.0.a1
pyrus_communis pycom02g11870 pycom15g23140
rosa_chinensis RchiOBHm_Chr2g0102001
rosa_laevigata RLG00000017125
rosa_multiflora Rmu_co8487067.1_g000001
rosa_roxburghii Rroxscaffold_2G00140840
rosa_samantha Rh2AG151900 Rh2BG157300 Rh2CG157300 Rh2DG157400
rosa_wichuraiana Rw2G011860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 834
AasI GACNNNNNNGTC 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 834
AccB1I GGYRCC 1 cut(s) 788
AccBSI CCGCTC 1 cut(s) 56
AclWI GGATC 2 cut(s) 300, 1261
AcoI YGGCCR 3 cut(s) 313, 384, 915
AcsI RAATTY 1 cut(s) 462
AcuI CTGAAG 2 cut(s) 1188, 1335
AcyI GRCGYC 1 cut(s) 789
AfaI GTAC 5 cut(s) 287, 373, 503, 974, 1339
AfiI CCNNNNNNNGG 3 cut(s) 118, 924, 1313
AgsI TTSAA 7 cut(s) 343, 397, 426, 622, 799, 985, 1030
AhdI GACNNNNNGTC 1 cut(s) 235
AjnI CCWGG 2 cut(s) 1130, 1357
AluBI AGCT 5 cut(s) 94, 533, 816, 892, 901
AluI AGCT 5 cut(s) 94, 533, 816, 892, 901
Alw21I GWGCWC 2 cut(s) 153, 336
Alw26I GTCTC 3 cut(s) 148, 489, 551
AlwI GGATC 2 cut(s) 300, 1261
AlwNI CAGNNNCTG 1 cut(s) 1358
AoxI GGCC 6 cut(s) 81, 120, 313, 384, 915, 1074
ApoI RAATTY 1 cut(s) 462
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AspLEI GCGC 1 cut(s) 791
AspS9I GGNCC 3 cut(s) 187, 361, 1162
AsuC2I CCSGG 3 cut(s) 113, 793, 1231
AsuHPI GGTGA 4 cut(s) 613, 659, 1217, 1373
AvaII GGWCC 3 cut(s) 187, 361, 1162
BanI GGYRCC 1 cut(s) 788
BanII GRGCYC 1 cut(s) 752
BarI GAAGNNNNNNTAC 2 cut(s) 1330, 1362
Bbv12I GWGCWC 2 cut(s) 153, 336
BccI CCATC 6 cut(s) 74, 565, 670, 850, 1196, 1228
BceAI ACGGC 3 cut(s) 179, 268, 328
BciT130I CCWGG 2 cut(s) 1132, 1359
BclI TGATCA 1 cut(s) 513
BcnI CCSGG 3 cut(s) 113, 793, 1231
BcoDI GTCTC 3 cut(s) 148, 489, 551
BfmI CTRYAG 1 cut(s) 1380
BfoI RGCGCY 1 cut(s) 792
BfuAI ACCTGC 1 cut(s) 834
BglI GCCNNNNNGGC 1 cut(s) 321
BisI GCNGC 5 cut(s) 37, 54, 202, 708, 915
BlsI GCNGC 5 cut(s) 38, 55, 203, 709, 916
BmcAI AGTACT 1 cut(s) 1339
Bme1390I CCNGG 5 cut(s) 113, 793, 1132, 1231, 1359
Bme18I GGWCC 3 cut(s) 187, 361, 1162
BmeRI GACNNNNNGTC 1 cut(s) 235
BmgT120I GGNCC 3 cut(s) 187, 361, 1162
BmiI GGNNCC 3 cut(s) 749, 790, 1164
BmrFI CCNGG 5 cut(s) 113, 793, 1132, 1231, 1359
BmsI GCATC 3 cut(s) 796, 990, 1168
BplI GAGNNNNNCTC 2 cut(s) 140, 172
Bpu10I CCTNAGC 1 cut(s) 183
BpuMI CCSGG 3 cut(s) 113, 793, 1231
BsaBI GATNNNNATC 1 cut(s) 512
BsaHI GRCGYC 1 cut(s) 789
BsaJI CCNNGG 6 cut(s) 78, 123, 1077, 1249, 1284, 1357
BsaWI WCCGGW 2 cut(s) 96, 1012
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 924, 1313
Bse1I ACTGG 1 cut(s) 364
Bse8I GATNNNNATC 1 cut(s) 512
BseBI CCWGG 2 cut(s) 1132, 1359
BseDI CCNNGG 6 cut(s) 78, 123, 1077, 1249, 1284, 1357
BseGI GGATG 4 cut(s) 300, 573, 811, 858
BseJI GATNNNNATC 1 cut(s) 512
BseLI CCNNNNNNNGG 3 cut(s) 118, 924, 1313
BseMII CTCAG 2 cut(s) 153, 197
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 3 cut(s) 127, 590, 1160
BseX3I CGGCCG 1 cut(s) 313
BseYI CCCAGC 2 cut(s) 533, 1313
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 6 cut(s) 83, 122, 315, 386, 917, 1076
BshNI GGYRCC 1 cut(s) 788
BsiEI CGRYCG 1 cut(s) 316
BsiHKAI GWGCWC 2 cut(s) 153, 336
BsiSI CCGG 7 cut(s) 97, 113, 542, 792, 803, 1013, 1230
BsiWI CGTACG 1 cut(s) 501
BslFI GGGAC 6 cut(s) 199, 235, 428, 1148, 1175, 1340
BslI CCNNNNNNNGG 3 cut(s) 118, 924, 1313
BsmAI GTCTC 3 cut(s) 148, 489, 551
BsmBI CGTCTC 1 cut(s) 551
BsmFI GGGAC 6 cut(s) 199, 235, 428, 1148, 1175, 1340
BsmI GAATGC 1 cut(s) 1132
BsnI GGCC 6 cut(s) 83, 122, 315, 386, 917, 1076
Bsp1286I GDGCHC 3 cut(s) 153, 336, 752
Bsp143I GATC 4 cut(s) 305, 380, 513, 1253
BspANI GGCC 6 cut(s) 83, 122, 315, 386, 917, 1076
BspCNI CTCAG 2 cut(s) 152, 196
BspHI TCATGA 1 cut(s) 1195
BspLI GGNNCC 3 cut(s) 749, 790, 1164
BspMI ACCTGC 1 cut(s) 834
BspPI GGATC 2 cut(s) 300, 1261
BspT107I GGYRCC 1 cut(s) 788
BsrBI CCGCTC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 6 cut(s) 78, 123, 1077, 1249, 1284, 1357
BssMI GATC 4 cut(s) 305, 380, 513, 1253
BssNI GRCGYC 1 cut(s) 789
BssT1I CCWWGG 5 cut(s) 78, 123, 1077, 1249, 1284
Bst2UI CCWGG 2 cut(s) 1132, 1359
Bst4CI ACNGT 4 cut(s) 432, 562, 1096, 1342
Bst6I CTCTTC 5 cut(s) 175, 645, 983, 1130, 1203
BstACI GRCGYC 1 cut(s) 789
BstC8I GCNNGC 3 cut(s) 322, 336, 415
BstDEI CTNAG 3 cut(s) 139, 183, 1290
BstF5I GGATG 4 cut(s) 300, 573, 811, 858
BstH2I RGCGCY 1 cut(s) 792
BstHHI GCGC 1 cut(s) 791
BstKTI GATC 4 cut(s) 308, 383, 516, 1256
BstMAI GTCTC 3 cut(s) 148, 489, 551
BstMBI GATC 4 cut(s) 305, 380, 513, 1253
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 4 cut(s) 33, 321, 898, 1376
BstNI CCWGG 2 cut(s) 1132, 1359
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 5 cut(s) 111, 791, 1130, 1229, 1357
BstSFI CTRYAG 1 cut(s) 1380
BstX2I RGATCY 1 cut(s) 1253
BstYI RGATCY 1 cut(s) 1253
BstZI CGGCCG 1 cut(s) 313
BsuRI GGCC 6 cut(s) 83, 122, 315, 386, 917, 1076
BtsCI GGATG 4 cut(s) 300, 573, 811, 858
BtsI GCAGTG 1 cut(s) 1277
BtsIMutI CAGTG 2 cut(s) 456, 1277
BveI ACCTGC 1 cut(s) 834
Cac8I GCNNGC 3 cut(s) 322, 336, 415
CaiI CAGNNNCTG 1 cut(s) 1358
CciI TCATGA 1 cut(s) 1195
CfoI GCGC 1 cut(s) 791
Cfr13I GGNCC 3 cut(s) 187, 361, 1162
Csp6I GTAC 5 cut(s) 286, 372, 502, 973, 1338
CviAII CATG 3 cut(s) 325, 737, 1196
CviQI GTAC 5 cut(s) 286, 372, 502, 973, 1338
DdeI CTNAG 3 cut(s) 139, 183, 1290
DinI GGCGCC 1 cut(s) 790
DpnI GATC 4 cut(s) 307, 382, 515, 1255
DpnII GATC 4 cut(s) 305, 380, 513, 1253
DrdI GACNNNNNNGTC 1 cut(s) 194
DriI GACNNNNNGTC 1 cut(s) 235
DseDI GACNNNNNNGTC 1 cut(s) 194
EaeI YGGCCR 3 cut(s) 313, 384, 915
EagI CGGCCG 1 cut(s) 313
Eam1104I CTCTTC 5 cut(s) 175, 645, 983, 1130, 1203
Eam1105I GACNNNNNGTC 1 cut(s) 235
EarI CTCTTC 5 cut(s) 175, 645, 983, 1130, 1203
EciI GGCGGA 3 cut(s) 14, 23, 188
EclXI CGGCCG 1 cut(s) 313
Eco130I CCWWGG 5 cut(s) 78, 123, 1077, 1249, 1284
Eco147I AGGCCT 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 752
Eco47I GGWCC 3 cut(s) 187, 361, 1162
Eco52I CGGCCG 1 cut(s) 313
Eco57I CTGAAG 2 cut(s) 1188, 1335
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 1130, 1357
EcoT14I CCWWGG 5 cut(s) 78, 123, 1077, 1249, 1284
EcoT22I ATGCAT 1 cut(s) 1005
EcoT38I GRGCYC 1 cut(s) 752
EgeI GGCGCC 1 cut(s) 790
EheI GGCGCC 1 cut(s) 790
ErhI CCWWGG 5 cut(s) 78, 123, 1077, 1249, 1284
Esp3I CGTCTC 1 cut(s) 551
FaeI CATG 3 cut(s) 328, 740, 1199
FaqI GGGAC 6 cut(s) 199, 235, 428, 1148, 1175, 1340
FatI CATG 3 cut(s) 324, 736, 1195
FbaI TGATCA 1 cut(s) 513
Fnu4HI GCNGC 5 cut(s) 37, 54, 202, 708, 915
FokI GGATG 4 cut(s) 287, 580, 818, 865
FriOI GRGCYC 1 cut(s) 752
Fsp4HI GCNGC 5 cut(s) 37, 54, 202, 708, 915
GlaI GCGC 1 cut(s) 790
GluI GCNGC 5 cut(s) 37, 54, 202, 708, 915
GsaI CCCAGC 2 cut(s) 537, 1317
HaeII RGCGCY 1 cut(s) 792
HaeIII GGCC 6 cut(s) 83, 122, 315, 386, 917, 1076
HapII CCGG 7 cut(s) 97, 113, 542, 792, 803, 1013, 1230
HhaI GCGC 1 cut(s) 791
Hin1I GRCGYC 1 cut(s) 789
Hin1II CATG 3 cut(s) 328, 740, 1199
Hin6I GCGC 1 cut(s) 789
HinP1I GCGC 1 cut(s) 789
HindIII AAGCTT 1 cut(s) 899
HinfI GANTC 4 cut(s) 236, 248, 508, 1087
HpaII CCGG 7 cut(s) 97, 113, 542, 792, 803, 1013, 1230
HphI GGTGA 4 cut(s) 613, 659, 1217, 1373
Hpy166II GTNNAC 3 cut(s) 45, 294, 877
Hpy188I TCNGA 7 cut(s) 103, 148, 305, 378, 468, 513, 1092
Hpy188III TCNNGA 5 cut(s) 185, 488, 925, 985, 1196
Hpy8I GTNNAC 3 cut(s) 45, 294, 877
HpyAV CCTTC 7 cut(s) 250, 541, 574, 679, 757, 865, 1063
HpyCH4III ACNGT 4 cut(s) 432, 562, 1096, 1342
HpyCH4V TGCA 3 cut(s) 417, 843, 1003
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 321, 898, 1376
HpyF3I CTNAG 3 cut(s) 139, 183, 1290
Hsp92I GRCGYC 1 cut(s) 789
Hsp92II CATG 3 cut(s) 328, 740, 1199
HspAI GCGC 1 cut(s) 789
KasI GGCGCC 1 cut(s) 788
Ksp22I TGATCA 1 cut(s) 513
Kzo9I GATC 4 cut(s) 305, 380, 513, 1253
LmnI GCTCC 3 cut(s) 99, 747, 889
LweI GCATC 3 cut(s) 796, 990, 1168
MaeIII GTNAC 4 cut(s) 592, 601, 1213, 1342
MalI GATC 4 cut(s) 307, 382, 515, 1255
MbiI CCGCTC 1 cut(s) 56
MboI GATC 4 cut(s) 305, 380, 513, 1253
MflI RGATCY 1 cut(s) 1253
MhlI GDGCHC 3 cut(s) 153, 336, 752
MluCI AATT 4 cut(s) 397, 449, 462, 820
Mly113I GGCGCC 1 cut(s) 789
MlyI GAGTC 2 cut(s) 245, 257
MmeI TCCRAC 1 cut(s) 867
Mph1103I ATGCAT 1 cut(s) 1005
MseI TTAA 4 cut(s) 894, 903, 1020, 1098
MslI CAYNNNNRTG 2 cut(s) 741, 1200
MspI CCGG 7 cut(s) 97, 113, 542, 792, 803, 1013, 1230
MspR9I CCNGG 5 cut(s) 113, 793, 1132, 1231, 1359
Mva1269I GAATGC 1 cut(s) 1132
MvaI CCWGG 2 cut(s) 1132, 1359
MwoI GCNNNNNNNGC 4 cut(s) 33, 321, 898, 1376
NarI GGCGCC 1 cut(s) 789
NciI CCSGG 3 cut(s) 113, 793, 1231
NdeII GATC 4 cut(s) 305, 380, 513, 1253
NlaIII CATG 3 cut(s) 328, 740, 1199
NlaIV GGNNCC 3 cut(s) 749, 790, 1164
NmeAIII GCCGAG 2 cut(s) 341, 892
NmuCI GTSAC 1 cut(s) 601
NsiI ATGCAT 1 cut(s) 1005
NspI RCATGY 1 cut(s) 328
PagI TCATGA 1 cut(s) 1195
PaqCI CACCTGC 1 cut(s) 834
PceI AGGCCT 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 1 cut(s) 1132
PfeI GAWTC 2 cut(s) 508, 1087
Pfl23II CGTACG 1 cut(s) 501
PkrI GCNGC 5 cut(s) 38, 55, 203, 709, 916
PleI GAGTC 2 cut(s) 244, 256
PluTI GGCGCC 1 cut(s) 792
PpsI GAGTC 2 cut(s) 244, 256
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 2 cut(s) 1130, 1357
PspFI CCCAGC 2 cut(s) 533, 1313
PspGI CCWGG 2 cut(s) 1130, 1357
PspLI CGTACG 1 cut(s) 501
PspN4I GGNNCC 3 cut(s) 749, 790, 1164
PspPI GGNCC 3 cut(s) 187, 361, 1162
PspPPI RGGWCCY 1 cut(s) 187
PstNI CAGNNNCTG 1 cut(s) 1358
PsuI RGATCY 1 cut(s) 1253
RsaI GTAC 5 cut(s) 287, 373, 503, 974, 1339
RsaNI GTAC 5 cut(s) 286, 372, 502, 973, 1338
RseI CAYNNNNRTG 2 cut(s) 741, 1200
SaqAI TTAA 4 cut(s) 894, 903, 1020, 1098
SatI GCNGC 5 cut(s) 37, 54, 202, 708, 915
Sau3AI GATC 4 cut(s) 305, 380, 513, 1253
Sau96I GGNCC 3 cut(s) 187, 361, 1162
ScaI AGTACT 1 cut(s) 1339
SchI GAGTC 2 cut(s) 245, 257
ScrFI CCNGG 5 cut(s) 113, 793, 1132, 1231, 1359
SduI GDGCHC 3 cut(s) 153, 336, 752
SfaNI GCATC 3 cut(s) 796, 990, 1168
SfcI CTRYAG 1 cut(s) 1380
SfoI GGCGCC 1 cut(s) 790
SinI GGWCC 3 cut(s) 187, 361, 1162
SmiMI CAYNNNNRTG 2 cut(s) 741, 1200
Sse9I AATT 4 cut(s) 397, 449, 462, 820
SseBI AGGCCT 1 cut(s) 122
SspDI GGCGCC 1 cut(s) 788
StuI AGGCCT 1 cut(s) 122
StyD4I CCNGG 5 cut(s) 111, 791, 1130, 1229, 1357
StyI CCWWGG 5 cut(s) 78, 123, 1077, 1249, 1284
TaaI ACNGT 4 cut(s) 432, 562, 1096, 1342
TaqI TCGA 4 cut(s) 234, 246, 330, 1176
TasI AATT 4 cut(s) 397, 449, 462, 820
TatI WGTACW 1 cut(s) 1337
TauI GCSGC 5 cut(s) 39, 56, 204, 710, 917
TfiI GAWTC 2 cut(s) 508, 1087
Tru1I TTAA 4 cut(s) 894, 903, 1020, 1098
Tru9I TTAA 4 cut(s) 894, 903, 1020, 1098
TscAI CASTG 2 cut(s) 463, 1277
TseFI GTSAC 1 cut(s) 601
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 3 cut(s) 232, 792, 1067
TspRI CASTG 2 cut(s) 463, 1277
VpaK11BI GGWCC 3 cut(s) 187, 361, 1162
XapI RAATTY 1 cut(s) 462
XceI RCATGY 1 cut(s) 328
ZrmI AGTACT 1 cut(s) 1339
Zsp2I ATGCAT 1 cut(s) 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.