Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014943

Physical Location & Seq

Genomic Coordinates Reverse (-)

17374454 .. 17376279

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCTCCTTCAACAAAAGTTCTCTCTTTACTTCTCTTATATGTCGTCGTGTCATTAGCCTCCGGTGATGAGTCCATCATCAACGACCATCTCCAACTTCCATCGGACGGCAAGTGGAGAACCGATGAAGAAGTGAGGTCCATCTACTTACAATGGTCCGCAGAACACGGGAAAACTAACAACAACAACAACGGTATCATCAACGACCAAGACAAAAGATTCAATATTTTCAAAGACAACTTAAGATTCATCGATCTACACAACGAAAACAACAAGAACGCTACTTACAAGCTTGGTCTCACCAAATTTACCGATCTCACTAACGATGAGTACCGCAAGTTGTACCTCGGGGCAAGAACTGAGCCCGCCCGCCGCATCGCTAAGGCCAAGAATGTCAACCAGAAATACTCAGCCGCTGTAAACGGCAAGGAGGTTCCAGAGACGGTTGATTGGAGACAGAAAGGAGCCGTTAACCCCATCAAAGACCAAGGAACTTGCGGAAGTTGTTGGGCGTTTTCGACTACTGCAGCAGTAGAAGGTATAAACAAGATCGTAACAGGAGAACTCATATCTCTATCAGAACAAGAACTTGTTGACTGCGACAAATCCTACAATCAAGGTTGCAACGGCGGTTTAATGGACTACGCTTTTCAATTCATCATGAAAAATGGTGGCTTAAACACTGAGAAAGATTATCCTTACCGTGGATTCGGCGGAAAATGCAATTCTTTCTTGAAGAATTCTAGAGTTGTGAGTATTGATGGGTACGAAGATGTTCCTACTAAAGACGAGACTGCGTTGAAGAAAGCTATTTCATACCAACCGGTTAGTGTAGCTATTGAAGCCGGTGGAAGAATTTTTCAACATTACCAATCGGGTATTTTTACCGGAAGTTGTGGTACAAATCTTGATCACGCGGTGGTTGCTGTCGGGTACGGATCAGAGAACGGTGTTGACTACTGGATTGTAAGGAACTCTTGGGGTCCACGTTGGGGTGAGGAAGGTTACATTAGAATGGAGAGAAACTTGGCAGCCTCCAAATCCGGTAAGTGTGGGATTGCGGTTGAAGCCTCGTACCCGGTTAAGTACAGCCCAAACCCGGTTCGTGGAAATACTATCAGCAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

376

Amino Acids

41.64

Weight (kDa)

7.54

Isoelectric Point (pI)

28.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	50 - 111	4.7e-13	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	145 - 361	2.5e-85	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36880
fragaria_vesca	FvH4_2g05500
malus_domestica	MD05G1086900.v1.1 MD12G1087000.v1.1
prunus_persica	Prupe.8G131600_v2.0.a1
pyrus_communis	pycom05g08620
rosa_chinensis	RchiOBHm_Chr6g0255771
rosa_laevigata	RLG00000014814
rosa_multiflora	Rmu_sc0001163.1_g000010
rosa_roxburghii	Rroxscaffold_7G00209680
rosa_rugosa	Rorug05G0561400
rosa_samantha	Rh6AG079300 Rh6BG072400 Rh6CG070600 Rh6DG067900
rosa_wichuraiana	Rw6G006840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	917
AclWI	GGATC	1 cut(s)	946
AcsI	RAATTY	3 cut(s)	305, 739, 855
AdeI	CACNNNGTG	1 cut(s)	919
AfaI	GTAC	7 cut(s)	332, 344, 767, 901, 935, 1076, 1088
AfiI	CCNNNNNNNGG	5 cut(s)	107, 704, 992, 1099, 1106
AflII	CTTAAG	1 cut(s)	241
AgeI	ACCGGT	1 cut(s)	823
AgsI	TTSAA	9 cut(s)	12, 223, 232, 653, 736, 802, 842, 863, 1067
AluBI	AGCT	3 cut(s)	292, 809, 836
AluI	AGCT	3 cut(s)	292, 809, 836
Alw26I	GTCTC	4 cut(s)	302, 434, 448, 785
AlwI	GGATC	1 cut(s)	946
AlwNI	CAGNNNCTG	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	527, 1031
ApoI	RAATTY	3 cut(s)	305, 739, 855
AsiGI	ACCGGT	1 cut(s)	823
Asp700I	GAANNNNTTC	1 cut(s)	774
AspS9I	GGNCC	3 cut(s)	138, 156, 983
AsuC2I	CCSGG	2 cut(s)	1079, 1100
AsuHPI	GGTGA	3 cut(s)	77, 292, 1007
AvaI	CYCGRG	1 cut(s)	347
AvaII	GGWCC	3 cut(s)	138, 156, 983
BaeI	ACNNNNGTAYC	2 cut(s)	178, 211
BanII	GRGCYC	1 cut(s)	366
BarI	GAAGNNNNNNTAC	2 cut(s)	883, 915
BbvI	GCAGC	2 cut(s)	539, 1043
BccI	CCATC	6 cut(s)	83, 96, 109, 149, 485, 755
BceAI	ACGGC	4 cut(s)	124, 439, 452, 643
BclI	TGATCA	1 cut(s)	910
BcnI	CCSGG	2 cut(s)	1079, 1100
BcoDI	GTCTC	4 cut(s)	302, 434, 448, 785
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	1 cut(s)	525
BfrI	CTTAAG	1 cut(s)	241
BisI	GCNGC	4 cut(s)	373, 414, 528, 1032
BlsI	GCNGC	4 cut(s)	374, 415, 529, 1033
Bme1390I	CCNGG	2 cut(s)	1079, 1100
Bme18I	GGWCC	3 cut(s)	138, 156, 983
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	3 cut(s)	138, 156, 983
BmiI	GGNNCC	4 cut(s)	6, 435, 466, 984
BmrFI	CCNGG	2 cut(s)	1079, 1100
BmsI	GCATC	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	381
BpuMI	CCSGG	2 cut(s)	1079, 1100
Bsa29I	ATCGAT	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	3 cut(s)	346, 487, 703
BsaWI	WCCGGW	4 cut(s)	62, 823, 887, 1043
Bsc4I	CCNNNNNNNGG	5 cut(s)	107, 704, 992, 1099, 1106
Bse118I	RCCGGY	2 cut(s)	823, 845
Bse1I	ACTGG	1 cut(s)	965
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	3 cut(s)	346, 487, 703
BseLI	CCNNNNNNNGG	5 cut(s)	107, 704, 992, 1099, 1106
BseMII	CTCAG	3 cut(s)	351, 423, 675
BseNI	ACTGG	1 cut(s)	965
BseXI	GCAGC	2 cut(s)	539, 1043
Bsh1236I	CGCG	1 cut(s)	917
BshFI	GGCC	1 cut(s)	386
BshTI	ACCGGT	1 cut(s)	823
BshVI	ATCGAT	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	7 cut(s)	63, 824, 846, 888, 1044, 1079, 1100
BslI	CCNNNNNNNGG	5 cut(s)	107, 704, 992, 1099, 1106
BsmAI	GTCTC	4 cut(s)	302, 434, 448, 785
BsmBI	CGTCTC	1 cut(s)	434
BsnI	GGCC	1 cut(s)	386
Bso31I	GGTCTC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	5 cut(s)	253, 313, 549, 910, 938
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	3 cut(s)	352, 422, 676
BspDI	ATCGAT	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	917
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	4 cut(s)	6, 435, 466, 984
BspMAI	CTGCAG	1 cut(s)	529
BspPI	GGATC	1 cut(s)	946
BspTI	CTTAAG	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	302
BsrFI	RCCGGY	2 cut(s)	823, 845
BsrI	ACTGG	1 cut(s)	965
BssAI	RCCGGY	2 cut(s)	823, 845
BssECI	CCNNGG	3 cut(s)	346, 487, 703
BssMI	GATC	5 cut(s)	253, 313, 549, 910, 938
BssT1I	CCWWGG	1 cut(s)	487
Bst4CI	ACNGT	4 cut(s)	194, 445, 704, 950
BstAFI	CTTAAG	1 cut(s)	241
BstC8I	GCNNGC	2 cut(s)	366, 370
BstDEI	CTNAG	4 cut(s)	360, 381, 409, 684
BstDSI	CCRYGG	1 cut(s)	703
BstFNI	CGCG	1 cut(s)	917
BstKTI	GATC	5 cut(s)	256, 316, 552, 913, 941
BstMAI	GTCTC	4 cut(s)	302, 434, 448, 785
BstMBI	GATC	5 cut(s)	253, 313, 549, 910, 938
BstMWI	GCNNNNNNNGC	4 cut(s)	720, 842, 923, 1067
BstSCI	CCNGG	2 cut(s)	1077, 1098
BstSFI	CTRYAG	1 cut(s)	525
BstUI	CGCG	1 cut(s)	917
BstV1I	GCAGC	2 cut(s)	539, 1043
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	386
BsuTUI	ATCGAT	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	703
BtgZI	GCGATG	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	1129
BtsIMutI	CAGTG	2 cut(s)	681, 1129
Cac8I	GCNNGC	2 cut(s)	366, 370
CaiI	CAGNNNCTG	1 cut(s)	416
CciI	TCATGA	1 cut(s)	660
Cfr10I	RCCGGY	2 cut(s)	823, 845
Cfr13I	GGNCC	3 cut(s)	138, 156, 983
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	7 cut(s)	331, 343, 766, 900, 934, 1075, 1087
CspAI	ACCGGT	1 cut(s)	823
CviAII	CATG	1 cut(s)	661
CviQI	GTAC	7 cut(s)	331, 343, 766, 900, 934, 1075, 1087
DdeI	CTNAG	4 cut(s)	360, 381, 409, 684
DpnI	GATC	5 cut(s)	255, 315, 551, 912, 940
DpnII	GATC	5 cut(s)	253, 313, 549, 910, 938
DraIII	CACNNNGTG	1 cut(s)	919
EciI	GGCGGA	1 cut(s)	729
Eco130I	CCWWGG	1 cut(s)	487
Eco24I	GRGCYC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	302
Eco47I	GGWCC	3 cut(s)	138, 156, 983
Eco88I	CYCGRG	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	739
EcoT14I	CCWWGG	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	487
Esp3I	CGTCTC	1 cut(s)	434
FaeI	CATG	1 cut(s)	664
FaiI	YATR	6 cut(s)	40, 42, 542, 569, 662, 817
FalI	AAGNNNNNCTT	2 cut(s)	961, 993
FatI	CATG	1 cut(s)	660
FauI	CCCGC	2 cut(s)	373, 377
FbaI	TGATCA	1 cut(s)	910
Fnu4HI	GCNGC	4 cut(s)	373, 414, 528, 1032
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	4 cut(s)	373, 414, 528, 1032
FspBI	CTAG	1 cut(s)	744
GluI	GCNGC	4 cut(s)	373, 414, 528, 1032
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	7 cut(s)	63, 824, 846, 888, 1044, 1079, 1100
Hin1II	CATG	1 cut(s)	664
HincII	GTYRAC	4 cut(s)	397, 472, 595, 955
HindII	GTYRAC	4 cut(s)	397, 472, 595, 955
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	4 cut(s)	71, 219, 246, 708
HpaI	GTTAAC	1 cut(s)	472
HpaII	CCGG	7 cut(s)	63, 824, 846, 888, 1044, 1079, 1100
HphI	GGTGA	3 cut(s)	77, 292, 1007
Hpy166II	GTNNAC	6 cut(s)	397, 421, 472, 595, 955, 986
Hpy188I	TCNGA	3 cut(s)	106, 580, 943
Hpy188III	TCNNGA	5 cut(s)	437, 661, 733, 744, 908
Hpy8I	GTNNAC	6 cut(s)	397, 421, 472, 595, 955, 986
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	18, 530, 995
HpyCH4III	ACNGT	4 cut(s)	194, 445, 704, 950
HpyCH4IV	ACGT	1 cut(s)	988
HpyCH4V	TGCA	3 cut(s)	527, 624, 723
HpyF10VI	GCNNNNNNNGC	4 cut(s)	720, 842, 923, 1067
HpyF3I	CTNAG	4 cut(s)	360, 381, 409, 684
HpySE526I	ACGT	1 cut(s)	988
Hsp92II	CATG	1 cut(s)	664
Ksp22I	TGATCA	1 cut(s)	910
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	5 cut(s)	253, 313, 549, 910, 938
LmnI	GCTCC	2 cut(s)	10, 464
Lsp1109I	GCAGC	2 cut(s)	539, 1043
LweI	GCATC	1 cut(s)	384
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	1 cut(s)	988
MaeIII	GTNAC	2 cut(s)	553, 1004
MalI	GATC	5 cut(s)	255, 315, 551, 912, 940
MboI	GATC	5 cut(s)	253, 313, 549, 910, 938
MboII	GAAGA	5 cut(s)	140, 748, 782, 814, 864
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	5 cut(s)	305, 653, 724, 739, 855
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	7 cut(s)	70, 129, 356, 424, 991, 1045, 1081
MroXI	GAANNNNTTC	1 cut(s)	774
MseI	TTAA	5 cut(s)	242, 471, 635, 677, 1083
MslI	CAYNNNNRTG	1 cut(s)	1013
MspA1I	CMGCKG	1 cut(s)	416
MspCI	CTTAAG	1 cut(s)	241
MspI	CCGG	7 cut(s)	63, 824, 846, 888, 1044, 1079, 1100
MspR9I	CCNGG	2 cut(s)	1079, 1100
MvnI	CGCG	1 cut(s)	917
MwoI	GCNNNNNNNGC	4 cut(s)	720, 842, 923, 1067
NciI	CCSGG	2 cut(s)	1079, 1100
NdeII	GATC	5 cut(s)	253, 313, 549, 910, 938
NlaIII	CATG	1 cut(s)	664
NlaIV	GGNNCC	4 cut(s)	6, 435, 466, 984
PagI	TCATGA	1 cut(s)	660
PdmI	GAANNNNTTC	1 cut(s)	774
PfeI	GAWTC	3 cut(s)	219, 246, 708
PinAI	ACCGGT	1 cut(s)	823
PkrI	GCNGC	4 cut(s)	374, 415, 529, 1033
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PspN4I	GGNNCC	4 cut(s)	6, 435, 466, 984
PspPI	GGNCC	3 cut(s)	138, 156, 983
PsrI	GAACNNNNNNTAC	2 cut(s)	269, 301
PstI	CTGCAG	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	416
RsaI	GTAC	7 cut(s)	332, 344, 767, 901, 935, 1076, 1088
RsaNI	GTAC	7 cut(s)	331, 343, 766, 900, 934, 1075, 1087
RseI	CAYNNNNRTG	1 cut(s)	1013
SaqAI	TTAA	5 cut(s)	242, 471, 635, 677, 1083
SatI	GCNGC	4 cut(s)	373, 414, 528, 1032
Sau3AI	GATC	5 cut(s)	253, 313, 549, 910, 938
Sau96I	GGNCC	3 cut(s)	138, 156, 983
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	2 cut(s)	1079, 1100
SduI	GDGCHC	1 cut(s)	366
SfaNI	GCATC	1 cut(s)	384
SfcI	CTRYAG	1 cut(s)	525
SinI	GGWCC	3 cut(s)	138, 156, 983
SmiMI	CAYNNNNRTG	1 cut(s)	1013
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	5 cut(s)	305, 653, 724, 739, 855
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	744
StyD4I	CCNGG	2 cut(s)	1077, 1098
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	4 cut(s)	194, 445, 704, 950
TaiI	ACGT	1 cut(s)	991
TaqI	TCGA	2 cut(s)	252, 518
TasI	AATT	5 cut(s)	305, 653, 724, 739, 855
TatI	WGTACW	1 cut(s)	1086
TauI	GCSGC	2 cut(s)	375, 416
TfiI	GAWTC	3 cut(s)	219, 246, 708
Tru1I	TTAA	5 cut(s)	242, 471, 635, 677, 1083
Tru9I	TTAA	5 cut(s)	242, 471, 635, 677, 1083
TscAI	CASTG	2 cut(s)	688, 1129
TseI	GCWGC	2 cut(s)	527, 1031
TspDTI	ATGAA	5 cut(s)	141, 238, 646, 677, 804
TspGWI	ACGGA	1 cut(s)	951
TspRI	CASTG	2 cut(s)	688, 1129
Vha464I	CTTAAG	1 cut(s)	241
VpaK11BI	GGWCC	3 cut(s)	138, 156, 983
XapI	RAATTY	3 cut(s)	305, 739, 855
XbaI	TCTAGA	1 cut(s)	743
XmnI	GAANNNNTTC	1 cut(s)	774
XspI	CTAG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.