Rh6DG067900

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0014943
Physical Location & Seq
Reverse (-)
6911441 .. 6911908
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG067900.1

Sequence Viewer

Length: 468 bp
ATGGCCGTCGCCGTTTTCTTCTTCCTTTTCCTCGGCCTAGCTTCCGCCGCCGACATGTCGATCATCGACTACGACAAGAAACACGGCATGGGTGTCGTACCAGAAAGGACCGAGGCGGAGGTGAAGGCCATGTACGAGTCGTGGCTGGTCAAACACCGCAAGGCGTACAATGCGCTGGGCGAGAAGGAGAGAAGGTTCCAGATTTTTAAGGATAATCTGAGGTTCATTGACGAGCATAACAAGGTGAACCGGAGTTACAAGGTGGGGTTGAATAGGTTCGCGGATATGACGAACCTGGAGTACCGGTCGAGGTTCTTGGGGATGAAGAAGGACCGGGCCGCCAGGCTTTCAGGTGGGAAGACGGGTCGGTATGCTTATCGGGTCGGGGACAAGTTGCCCGAGTCCGTGGATTGGAGGGCCAAGGGCGCTGTTTCCGAGGTTAAGGATCAAGGCCAATGCGGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0000932 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004842 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0005911 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009888 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010494 GO:0010498 GO:0010605 GO:0016020 GO:0016049 GO:0016567 GO:0016740 GO:0016787 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030163 GO:0031146 GO:0031224 GO:0031225 GO:0031347 GO:0031348 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0035770 GO:0036211 GO:0036464 GO:0040007 GO:0042176 GO:0042177 GO:0043161 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048046 GO:0048364 GO:0048468 GO:0048469 GO:0048519 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051704 GO:0051707 GO:0055044 GO:0060255 GO:0060560 GO:0065007 GO:0070011 GO:0070647 GO:0071695 GO:0071704 GO:0080090 GO:0080134 GO:0080147 GO:0090558 GO:0090627 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

155

Amino Acids

17.8

Weight (kDa)

9.59

Isoelectric Point (pI)

27.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 45 - 101 1.7e-19 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36880
fragaria_vesca FvH4_2g05500
malus_domestica MD05G1086900.v1.1 MD12G1087000.v1.1
prunus_persica Prupe.8G131600_v2.0.a1
pyrus_communis pycom05g08620
rosa_chinensis RchiOBHm_Chr6g0255771
rosa_laevigata RLG00000014814
rosa_multiflora Rmu_sc0001163.1_g000010
rosa_roxburghii Rroxscaffold_7G00209680
rosa_rugosa Rorug05G0561400
rosa_samantha Rh6AG079300 Rh6BG072400 Rh6CG070600 Rh6DG067900
rosa_wichuraiana Rw6G006840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 281
AciI CCGC 7 cut(s) 45, 48, 116, 157, 281, 339, 459
AclWI GGATC 1 cut(s) 453
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 4 cut(s) 99, 134, 167, 302
AfiI CCNNNNNNNGG 1 cut(s) 411
AflIII ACRYGT 1 cut(s) 54
AgeI ACCGGT 1 cut(s) 303
AgsI TTSAA 1 cut(s) 271
AjnI CCWGG 2 cut(s) 294, 341
AloI GAACNNNNNNTCC 2 cut(s) 179, 211
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
AlwI GGATC 1 cut(s) 453
Ama87I CYCGRG 1 cut(s) 398
AoxI GGCC 6 cut(s) 3, 34, 126, 336, 417, 451
AsiGI ACCGGT 1 cut(s) 303
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 2 cut(s) 175, 428
AspS9I GGNCC 4 cut(s) 108, 331, 336, 417
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 2 cut(s) 133, 256
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 2 cut(s) 108, 331
BarI GAAGNNNNNNTAC 2 cut(s) 116, 148
BbsI GAAGAC 1 cut(s) 365
BceAI ACGGC 1 cut(s) 100
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BciT130I CCWGG 2 cut(s) 296, 343
BcnI CCSGG 1 cut(s) 335
BfaI CTAG 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 429
BisI GCNGC 2 cut(s) 48, 339
BlsI GCNGC 2 cut(s) 49, 340
Bme1390I CCNGG 3 cut(s) 296, 335, 343
Bme18I GGWCC 2 cut(s) 108, 331
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 4 cut(s) 108, 331, 336, 417
BmiI GGNNCC 1 cut(s) 197
BmrFI CCNGG 3 cut(s) 296, 335, 343
BpiI GAAGAC 1 cut(s) 365
BpmI CTGGAG 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 335
BsaJI CCNNGG 5 cut(s) 31, 111, 405, 420, 435
BsaWI WCCGGW 2 cut(s) 249, 303
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 290, 320
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse118I RCCGGY 1 cut(s) 303
BseBI CCWGG 2 cut(s) 296, 343
BseDI CCNNGG 5 cut(s) 31, 111, 405, 420, 435
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMII CTCAG 1 cut(s) 209
BseYI CCCAGC 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 281
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 6 cut(s) 5, 36, 128, 338, 419, 453
BshTI ACCGGT 1 cut(s) 303
BsiEI CGRYCG 1 cut(s) 308
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 3 cut(s) 250, 304, 334
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 6 cut(s) 5, 36, 128, 338, 419, 453
BsoBI CYCGRG 1 cut(s) 398
Bsp143I GATC 2 cut(s) 60, 445
BspACI CCGC 7 cut(s) 45, 48, 116, 157, 281, 339, 459
BspANI GGCC 6 cut(s) 5, 36, 128, 338, 419, 453
BspCNI CTCAG 1 cut(s) 210
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 303
BssAI RCCGGY 1 cut(s) 303
BssECI CCNNGG 5 cut(s) 31, 111, 405, 420, 435
BssMI GATC 2 cut(s) 60, 445
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 2 cut(s) 296, 343
BstDEI CTNAG 1 cut(s) 218
BstDSI CCRYGG 1 cut(s) 405
BstF5I GGATG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 281
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 2 cut(s) 175, 428
BstKTI GATC 2 cut(s) 63, 448
BstMBI GATC 2 cut(s) 60, 445
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 3 cut(s) 47, 170, 425
BstNI CCWGG 2 cut(s) 296, 343
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 3 cut(s) 294, 333, 341
BstUI CGCG 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 365
BsuRI GGCC 6 cut(s) 5, 36, 128, 338, 419, 453
BtgI CCRYGG 1 cut(s) 405
BtsCI GGATG 1 cut(s) 327
CfoI GCGC 2 cut(s) 175, 428
Cfr10I RCCGGY 1 cut(s) 303
Cfr13I GGNCC 4 cut(s) 108, 331, 336, 417
Csp6I GTAC 4 cut(s) 98, 133, 166, 301
CspAI ACCGGT 1 cut(s) 303
CviAII CATG 3 cut(s) 55, 88, 130
CviJI RGCY 9 cut(s) 5, 36, 41, 128, 145, 338, 346, 419, 453
CviKI_1 RGCY 9 cut(s) 5, 36, 41, 128, 145, 338, 346, 419, 453
CviQI GTAC 4 cut(s) 98, 133, 166, 301
DdeI CTNAG 1 cut(s) 218
DpnI GATC 2 cut(s) 62, 447
DpnII GATC 2 cut(s) 60, 445
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 2 cut(s) 34, 131
Eco130I CCWWGG 1 cut(s) 420
Eco47I GGWCC 2 cut(s) 108, 331
Eco88I CYCGRG 1 cut(s) 398
EcoRII CCWGG 2 cut(s) 294, 341
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 3 cut(s) 58, 91, 133
FaiI YATR 6 cut(s) 56, 89, 131, 237, 287, 372
FaqI GGGAC 1 cut(s) 401
FatI CATG 3 cut(s) 54, 87, 129
Fnu4HI GCNGC 2 cut(s) 48, 339
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 2 cut(s) 48, 339
FspBI CTAG 1 cut(s) 38
GlaI GCGC 2 cut(s) 174, 427
GluI GCNGC 2 cut(s) 48, 339
GsaI CCCAGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 429
HaeIII GGCC 6 cut(s) 5, 36, 128, 338, 419, 453
HapII CCGG 3 cut(s) 250, 304, 334
HhaI GCGC 2 cut(s) 175, 428
Hin1II CATG 3 cut(s) 58, 91, 133
Hin6I GCGC 2 cut(s) 173, 426
HinP1I GCGC 2 cut(s) 173, 426
HinfI GANTC 2 cut(s) 137, 401
HpaII CCGG 3 cut(s) 250, 304, 334
HphI GGTGA 2 cut(s) 133, 256
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 2 cut(s) 219, 436
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 4 cut(s) 118, 178, 186, 322
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 170, 425
HpyF3I CTNAG 1 cut(s) 218
Hsp92II CATG 3 cut(s) 58, 91, 133
HspAI GCGC 2 cut(s) 173, 426
Kzo9I GATC 2 cut(s) 60, 445
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 254
MalI GATC 2 cut(s) 62, 447
MboI GATC 2 cut(s) 60, 445
MboII GAAGA 4 cut(s) 10, 13, 337, 370
MlyI GAGTC 2 cut(s) 146, 410
MnlI CCTC 7 cut(s) 41, 106, 112, 213, 303, 408, 430
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 2 cut(s) 207, 441
MspI CCGG 3 cut(s) 250, 304, 334
MspR9I CCNGG 3 cut(s) 296, 335, 343
MvaI CCWGG 2 cut(s) 296, 343
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 3 cut(s) 47, 170, 425
NciI CCSGG 1 cut(s) 335
NdeII GATC 2 cut(s) 60, 445
NlaIII CATG 3 cut(s) 58, 91, 133
NlaIV GGNNCC 1 cut(s) 197
NmeAIII GCCGAG 1 cut(s) 12
NspI RCATGY 1 cut(s) 58
PciI ACATGT 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 275
PinAI ACCGGT 1 cut(s) 303
PkrI GCNGC 2 cut(s) 49, 340
PleI GAGTC 2 cut(s) 145, 409
PpsI GAGTC 2 cut(s) 145, 409
PscI ACATGT 1 cut(s) 54
Psp6I CCWGG 2 cut(s) 294, 341
PspFI CCCAGC 1 cut(s) 175
PspGI CCWGG 2 cut(s) 294, 341
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 4 cut(s) 108, 331, 336, 417
PsrI GAACNNNNNNTAC 4 cut(s) 239, 271, 284, 316
RsaI GTAC 4 cut(s) 99, 134, 167, 302
RsaNI GTAC 4 cut(s) 98, 133, 166, 301
SaqAI TTAA 2 cut(s) 207, 441
SatI GCNGC 2 cut(s) 48, 339
Sau3AI GATC 2 cut(s) 60, 445
Sau96I GGNCC 4 cut(s) 108, 331, 336, 417
SchI GAGTC 2 cut(s) 146, 410
ScrFI CCNGG 3 cut(s) 296, 335, 343
SinI GGWCC 2 cut(s) 108, 331
SsiI CCGC 7 cut(s) 45, 48, 116, 157, 281, 339, 459
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 3 cut(s) 294, 333, 341
StyI CCWWGG 1 cut(s) 420
TaqI TCGA 3 cut(s) 59, 66, 308
TaqII GACCGA 1 cut(s) 125
TauI GCSGC 2 cut(s) 50, 341
Tru1I TTAA 2 cut(s) 207, 441
Tru9I TTAA 2 cut(s) 207, 441
TspDTI ATGAA 2 cut(s) 214, 338
TspGWI ACGGA 1 cut(s) 394
VpaK11BI GGWCC 2 cut(s) 108, 331
XceI RCATGY 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.