Rh6CG070600

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0014943
Physical Location & Seq
Reverse (-)
6989354 .. 6992500
3147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG070600.1

Sequence Viewer

Length: 912 bp
ATGGGTCTCTTTTCGTTCTCTTCCCGATCTTCTGGGTCCGCCATGGCCGTCGCCGTTTTCTTCTTCCTTTTCCTCGGCCTAGCTTCCGCCGCCGACATGTCGATCATCGACTACGACAAGAAACACGGCATGGGTGTCGTACCAGAAAGGACCGAGGCGGAGGTGAAGGCCATGTACGAGTCGTGGCTGGTCAAACACCGCAAGGCGTACAATGCGCTGGGCGAGAAGGAGAGAAGGTTCCAGATTTTTAAGGATAATCTGAGGTTCATTGACGAGCATAACAAGGTGAACCGGAGTTACAAGGTGGGGTTGAATAGGTTCGCGGATATGACGAACCTGGAGTACCGGTCGAGGTTCTTGGGGATGAAGAAGGACCGGGCCGCCAGGCTTTCAGGTGGGAAGACGGGTCGGTATGCTTATCGGGTCGGGGACAAGTTGCCCGAGTCCGTGGATTGGAGGGCCAAGGGCGCTGTTTCCGAGGTTAAGGATCAAGGCCAATGCGGGAGTTGCTGGGCTTTCTCAACGGTTGGAGCAGTGGAAGGTGTAAACCAGATTGTGACCGGTGAGCTAATCTCATTATCTGAGCAAGAACTTGTGGATTGTGATAAATCCTACAACCAGGGATGCAATGGAGGTCTTATGGACTATGCCTTCCAATTCATCATGAACAATGGTGGCATTGATTCCGAGGCTGATTACCCTTACCGGGGTACCGAGGGTTCATGTGATCCCAACAGGAAAAATGCTCGTGTTGTTTCCATTGATGGATATGAAGATGTTCCACAAAATGATGAGATCTCTTTGAAGAAGGCTTTGGCATATCAACCCGTGAGTGTTGCCATTGAAGCTGGGGGCCGGGAATTCCAGCTCTACCAATCGGTAATTCCTCTATTTCACATGTTGTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0000932 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004842 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0005911 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009888 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010494 GO:0010498 GO:0010605 GO:0016020 GO:0016049 GO:0016567 GO:0016740 GO:0016787 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030163 GO:0031146 GO:0031224 GO:0031225 GO:0031347 GO:0031348 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0035770 GO:0036211 GO:0036464 GO:0040007 GO:0042176 GO:0042177 GO:0043161 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048046 GO:0048364 GO:0048468 GO:0048469 GO:0048519 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051704 GO:0051707 GO:0055044 GO:0060255 GO:0060560 GO:0065007 GO:0070011 GO:0070647 GO:0071695 GO:0071704 GO:0080090 GO:0080134 GO:0080147 GO:0090558 GO:0090627 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

303

Amino Acids

33.8

Weight (kDa)

6.47

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 59 - 115 6e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 146 - 295 1.2e-56 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36880
fragaria_vesca FvH4_2g05500
malus_domestica MD05G1086900.v1.1 MD12G1087000.v1.1
prunus_persica Prupe.8G131600_v2.0.a1
pyrus_communis pycom05g08620
rosa_chinensis RchiOBHm_Chr6g0255771
rosa_laevigata RLG00000014814
rosa_multiflora Rmu_sc0001163.1_g000010
rosa_roxburghii Rroxscaffold_7G00209680
rosa_rugosa Rorug05G0561400
rosa_samantha Rh6AG079300 Rh6BG072400 Rh6CG070600 Rh6DG067900
rosa_wichuraiana Rw6G006840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 710
AccB1I GGYRCC 1 cut(s) 710
AccII CGCG 1 cut(s) 323
AciI CCGC 8 cut(s) 39, 87, 90, 158, 199, 323, 381, 501
AclWI GGATC 2 cut(s) 495, 722
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 860
AfaI GTAC 5 cut(s) 141, 176, 209, 344, 712
AfiI CCNNNNNNNGG 3 cut(s) 453, 706, 707
AflIII ACRYGT 2 cut(s) 96, 897
AgeI ACCGGT 2 cut(s) 345, 560
AgsI TTSAA 3 cut(s) 313, 805, 845
AjnI CCWGG 3 cut(s) 336, 383, 618
AjuI GAANNNNNNNTTGG 4 cut(s) 797, 829, 867, 899
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 4 cut(s) 83, 568, 848, 868
AluI AGCT 4 cut(s) 83, 568, 848, 868
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 2 cut(s) 495, 722
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 7 cut(s) 45, 76, 168, 378, 459, 493, 853
ApoI RAATTY 1 cut(s) 860
AsiGI ACCGGT 2 cut(s) 345, 560
Asp700I GAANNNNTTC 2 cut(s) 317, 777
Asp718I GGTACC 1 cut(s) 710
AspLEI GCGC 2 cut(s) 217, 470
AspS9I GGNCC 6 cut(s) 36, 150, 373, 378, 459, 853
AsuC2I CCSGG 3 cut(s) 377, 707, 857
AsuHPI GGTGA 3 cut(s) 175, 298, 575
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 3 cut(s) 36, 150, 373
BaeI ACNNNNGTAYC 2 cut(s) 694, 727
BanI GGYRCC 1 cut(s) 710
BarI GAAGNNNNNNTAC 2 cut(s) 158, 190
BauI CACGAG 1 cut(s) 747
BbsI GAAGAC 2 cut(s) 407, 897
BccI CCATC 1 cut(s) 758
BceAI ACGGC 3 cut(s) 32, 38, 142
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 3 cut(s) 338, 385, 620
BcnI CCSGG 3 cut(s) 377, 707, 857
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 471
BglII AGATCT 1 cut(s) 795
BisI GCNGC 2 cut(s) 90, 381
BlsI GCNGC 2 cut(s) 91, 382
Bme1390I CCNGG 6 cut(s) 338, 377, 385, 620, 707, 857
Bme18I GGWCC 3 cut(s) 36, 150, 373
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 6 cut(s) 36, 150, 373, 378, 459, 853
BmiI GGNNCC 4 cut(s) 37, 239, 712, 854
BmrFI CCNGG 6 cut(s) 338, 377, 385, 620, 707, 857
BmsI GCATC 1 cut(s) 614
BpiI GAAGAC 2 cut(s) 407, 897
BplI GAGNNNNNCTC 2 cut(s) 557, 589
BpmI CTGGAG 1 cut(s) 359
BpuMI CCSGG 3 cut(s) 377, 707, 857
BsaI GGTCTC 1 cut(s) 11
BsaWI WCCGGW 3 cut(s) 291, 345, 560
BsaXI ACNNNNNCTCC 4 cut(s) 221, 251, 332, 362
Bsc4I CCNNNNNNNGG 3 cut(s) 453, 706, 707
Bse118I RCCGGY 2 cut(s) 345, 560
Bse3DI GCAATG 1 cut(s) 634
BseBI CCWGG 3 cut(s) 338, 385, 620
BseGI GGATG 2 cut(s) 369, 629
BseLI CCNNNNNNNGG 3 cut(s) 453, 706, 707
BseMI GCAATG 1 cut(s) 634
BseMII CTCAG 2 cut(s) 251, 573
BseYI CCCAGC 3 cut(s) 217, 510, 848
Bsh1236I CGCG 1 cut(s) 323
Bsh1285I CGRYCG 1 cut(s) 350
BshFI GGCC 7 cut(s) 47, 78, 170, 380, 461, 495, 855
BshNI GGYRCC 1 cut(s) 710
BshTI ACCGGT 2 cut(s) 345, 560
BsiEI CGRYCG 1 cut(s) 350
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 6 cut(s) 292, 346, 376, 561, 706, 856
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 3 cut(s) 453, 706, 707
BsmAI GTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 443
BsnI GGCC 7 cut(s) 47, 78, 170, 380, 461, 495, 855
Bso31I GGTCTC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 440
Bsp143I GATC 5 cut(s) 26, 102, 487, 727, 795
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 8 cut(s) 39, 87, 90, 158, 199, 323, 381, 501
BspANI GGCC 7 cut(s) 47, 78, 170, 380, 461, 495, 855
BspCNI CTCAG 2 cut(s) 252, 574
BspFNI CGCG 1 cut(s) 323
BspHI TCATGA 1 cut(s) 663
BspLI GGNNCC 4 cut(s) 37, 239, 712, 854
BspPI GGATC 2 cut(s) 495, 722
BspT107I GGYRCC 1 cut(s) 710
BspTNI GGTCTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 634
BsrFI RCCGGY 2 cut(s) 345, 560
BssAI RCCGGY 2 cut(s) 345, 560
BssMI GATC 5 cut(s) 26, 102, 487, 727, 795
BssSI CACGAG 1 cut(s) 747
BssT1I CCWWGG 2 cut(s) 42, 462
Bst2BI CACGAG 1 cut(s) 747
Bst2UI CCWGG 3 cut(s) 338, 385, 620
Bst4CI ACNGT 1 cut(s) 526
Bst6I CTCTTC 1 cut(s) 25
BstDEI CTNAG 2 cut(s) 260, 582
BstDSI CCRYGG 2 cut(s) 42, 447
BstF5I GGATG 2 cut(s) 369, 629
BstFNI CGCG 1 cut(s) 323
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 2 cut(s) 217, 470
BstKTI GATC 5 cut(s) 29, 105, 490, 730, 798
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 5 cut(s) 26, 102, 487, 727, 795
BstMCI CGRYCG 1 cut(s) 350
BstMWI GCNNNNNNNGC 5 cut(s) 89, 212, 467, 507, 845
BstNI CCWGG 3 cut(s) 338, 385, 620
BstNSI RCATGY 2 cut(s) 100, 901
BstSCI CCNGG 6 cut(s) 336, 375, 383, 618, 705, 855
BstUI CGCG 1 cut(s) 323
BstV2I GAAGAC 2 cut(s) 407, 897
BstX2I RGATCY 1 cut(s) 795
BstYI RGATCY 1 cut(s) 795
BsuRI GGCC 7 cut(s) 47, 78, 170, 380, 461, 495, 855
BtgI CCRYGG 2 cut(s) 42, 447
BtsCI GGATG 2 cut(s) 369, 629
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 1 cut(s) 540
CciI TCATGA 1 cut(s) 663
CfoI GCGC 2 cut(s) 217, 470
Cfr10I RCCGGY 2 cut(s) 345, 560
Cfr13I GGNCC 6 cut(s) 36, 150, 373, 378, 459, 853
Csp6I GTAC 5 cut(s) 140, 175, 208, 343, 711
CspAI ACCGGT 2 cut(s) 345, 560
CviAII CATG 7 cut(s) 43, 97, 130, 172, 664, 723, 898
CviQI GTAC 5 cut(s) 140, 175, 208, 343, 711
DdeI CTNAG 2 cut(s) 260, 582
DpnI GATC 5 cut(s) 28, 104, 489, 729, 797
DpnII GATC 5 cut(s) 26, 102, 487, 727, 795
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EciI GGCGGA 3 cut(s) 28, 76, 173
Eco130I CCWWGG 2 cut(s) 42, 462
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 3 cut(s) 36, 150, 373
Eco88I CYCGRG 1 cut(s) 440
EcoRI GAATTC 1 cut(s) 860
EcoRII CCWGG 3 cut(s) 336, 383, 618
EcoT14I CCWWGG 2 cut(s) 42, 462
ErhI CCWWGG 2 cut(s) 42, 462
FaeI CATG 7 cut(s) 46, 100, 133, 175, 667, 726, 901
FaqI GGGAC 1 cut(s) 443
FatI CATG 7 cut(s) 42, 96, 129, 171, 663, 722, 897
FauI CCCGC 1 cut(s) 494
Fnu4HI GCNGC 2 cut(s) 90, 381
FokI GGATG 2 cut(s) 376, 636
Fsp4HI GCNGC 2 cut(s) 90, 381
FspBI CTAG 1 cut(s) 80
GlaI GCGC 2 cut(s) 216, 469
GluI GCNGC 2 cut(s) 90, 381
GsaI CCCAGC 3 cut(s) 221, 514, 852
GsuI CTGGAG 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 471
HaeIII GGCC 7 cut(s) 47, 78, 170, 380, 461, 495, 855
HapII CCGG 6 cut(s) 292, 346, 376, 561, 706, 856
HhaI GCGC 2 cut(s) 217, 470
Hin1II CATG 7 cut(s) 46, 100, 133, 175, 667, 726, 901
Hin6I GCGC 2 cut(s) 215, 468
HinP1I GCGC 2 cut(s) 215, 468
HinfI GANTC 3 cut(s) 179, 443, 683
HpaII CCGG 6 cut(s) 292, 346, 376, 561, 706, 856
HphI GGTGA 3 cut(s) 175, 298, 575
Hpy166II GTNNAC 2 cut(s) 289, 547
Hpy188I TCNGA 4 cut(s) 261, 478, 583, 688
Hpy188III TCNNGA 4 cut(s) 24, 241, 664, 909
Hpy8I GTNNAC 2 cut(s) 289, 547
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 7 cut(s) 160, 220, 228, 364, 533, 661, 802
HpyCH4III ACNGT 1 cut(s) 526
HpyCH4V TGCA 1 cut(s) 627
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 212, 467, 507, 845
HpyF3I CTNAG 2 cut(s) 260, 582
Hsp92II CATG 7 cut(s) 46, 100, 133, 175, 667, 726, 901
HspAI GCGC 2 cut(s) 215, 468
KpnI GGTACC 1 cut(s) 714
Kzo9I GATC 5 cut(s) 26, 102, 487, 727, 795
LmnI GCTCC 1 cut(s) 530
LweI GCATC 1 cut(s) 614
MaeI CTAG 1 cut(s) 80
MaeIII GTNAC 2 cut(s) 296, 556
MalI GATC 5 cut(s) 28, 104, 489, 729, 797
MboI GATC 5 cut(s) 26, 102, 487, 727, 795
MboII GAAGA 9 cut(s) 12, 21, 52, 55, 379, 412, 785, 817, 897
MflI RGATCY 1 cut(s) 795
MluCI AATT 3 cut(s) 656, 860, 882
MlyI GAGTC 2 cut(s) 188, 452
MmeI TCCRAC 1 cut(s) 508
MroXI GAANNNNTTC 2 cut(s) 317, 777
MseI TTAA 2 cut(s) 249, 483
MspI CCGG 6 cut(s) 292, 346, 376, 561, 706, 856
MspR9I CCNGG 6 cut(s) 338, 377, 385, 620, 707, 857
MvaI CCWGG 3 cut(s) 338, 385, 620
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 5 cut(s) 89, 212, 467, 507, 845
NciI CCSGG 3 cut(s) 377, 707, 857
NcoI CCATGG 1 cut(s) 42
NdeII GATC 5 cut(s) 26, 102, 487, 727, 795
NlaIII CATG 7 cut(s) 46, 100, 133, 175, 667, 726, 901
NlaIV GGNNCC 4 cut(s) 37, 239, 712, 854
NmeAIII GCCGAG 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 556
NspI RCATGY 2 cut(s) 100, 901
PagI TCATGA 1 cut(s) 663
PciI ACATGT 2 cut(s) 96, 897
PdmI GAANNNNTTC 2 cut(s) 317, 777
PfeI GAWTC 1 cut(s) 683
PinAI ACCGGT 2 cut(s) 345, 560
PkrI GCNGC 2 cut(s) 91, 382
PleI GAGTC 2 cut(s) 187, 451
PpsI GAGTC 2 cut(s) 187, 451
PscI ACATGT 2 cut(s) 96, 897
Psp6I CCWGG 3 cut(s) 336, 383, 618
PspFI CCCAGC 3 cut(s) 217, 510, 848
PspGI CCWGG 3 cut(s) 336, 383, 618
PspN4I GGNNCC 4 cut(s) 37, 239, 712, 854
PspPI GGNCC 6 cut(s) 36, 150, 373, 378, 459, 853
PsrI GAACNNNNNNTAC 6 cut(s) 281, 313, 326, 358, 703, 735
PsuI RGATCY 1 cut(s) 795
RsaI GTAC 5 cut(s) 141, 176, 209, 344, 712
RsaNI GTAC 5 cut(s) 140, 175, 208, 343, 711
SaqAI TTAA 2 cut(s) 249, 483
SatI GCNGC 2 cut(s) 90, 381
Sau3AI GATC 5 cut(s) 26, 102, 487, 727, 795
Sau96I GGNCC 6 cut(s) 36, 150, 373, 378, 459, 853
SchI GAGTC 2 cut(s) 188, 452
ScrFI CCNGG 6 cut(s) 338, 377, 385, 620, 707, 857
SfaNI GCATC 1 cut(s) 614
SinI GGWCC 3 cut(s) 36, 150, 373
Sse9I AATT 3 cut(s) 656, 860, 882
SsiI CCGC 8 cut(s) 39, 87, 90, 158, 199, 323, 381, 501
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 6 cut(s) 336, 375, 383, 618, 705, 855
StyI CCWWGG 2 cut(s) 42, 462
TaaI ACNGT 1 cut(s) 526
TaqI TCGA 3 cut(s) 101, 108, 350
TaqII GACCGA 1 cut(s) 167
TasI AATT 3 cut(s) 656, 860, 882
TauI GCSGC 2 cut(s) 92, 383
TfiI GAWTC 1 cut(s) 683
Tru1I TTAA 2 cut(s) 249, 483
Tru9I TTAA 2 cut(s) 249, 483
TscAI CASTG 1 cut(s) 540
TseFI GTSAC 1 cut(s) 556
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 6 cut(s) 256, 380, 649, 680, 711, 786
TspGWI ACGGA 1 cut(s) 436
TspRI CASTG 1 cut(s) 540
VpaK11BI GGWCC 3 cut(s) 36, 150, 373
XapI RAATTY 1 cut(s) 860
XceI RCATGY 2 cut(s) 100, 901
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmnI GAANNNNTTC 2 cut(s) 317, 777
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.