Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013318

Physical Location & Seq

Genomic Coordinates Reverse (-)

17616659 .. 17618656

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGGTGTGGTAGAAGAAGCTCACAACGTGAAGGTGATTGGTTCAGGAGAAGCCACGATCGTGTTAGGTCACGGGTTCGGCACGGACCAGTCAGTATGGAAACACTTGGTTCCACATCTGGTCGACGATTACCGCGTCGTCCTCTACGACAACATGGGAGCCGGTACGACCAACCCTGACTATTTCGACTTCGATCGTTACTCAAATCTCGAAGGCTACTCTTTCGATTTGATTGCAATCTTGGAAGATCTCAAGATTGAGTCTTGTATCTTTGTTGGCCACTCTGTTTCTGCCATGATTGGTGTCTTGGCTTCTCTTAACCGTCCTGATCTCTTCTCCAAAATCGTCATGATCTCTGCTTCTCCGAGATACGTAAACGATGTTGATTACCAAGGTGGATTCGAACAAGAAGACTTAAACCAACTATTCGAAGCCATCCGAAGCAACTACAAAGCGTGGTGCTTAGGTTTCGCTCCACTCGCCGTCGGTGGCGACATGGACTCCATCGCCGTTCAAGAATTCAGCAGAACACTCTTCAATATGCGTCCCGACATAGCTCTCTCCGTCGGCCAGACCATTTTCCAAAGTGACATGAGACAGATCTTACCTTTTGTCACTGTTCCGTGTCACATTCTCCAAAGTGTTAAGGACTTAGCTGTACCAGTCGTTGTCTCCGAGTATCTTCACGCCAATCTTGGCTGTGAATCCGTCGTCGAGGTTATTCCTTCTGATGGTCATCTTCCTCAGCTTAGCTCACCAGATTCTGTTATTCCTGTCATCCTCCGTCACATTCGTAATGACATTGCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009791 GO:0032501 GO:0032502 GO:0036377 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0048856 GO:0050896 GO:0051704 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

270

Amino Acids

29.79

Weight (kDa)

4.64

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	17 - 233	1.3e-07	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	19 - 252	3.5e-14	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	20 - 257	1.3e-15	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37470
fragaria_vesca	FvH4_1g17110
malus_domestica	MD02G1181300.v1.1 MD02G1181500.v1.1
prunus_persica	Prupe.6G225000_v2.0.a1
pyrus_communis	pycom02g14720 pycom02g14730
rosa_chinensis	RchiOBHm_Chr2g0107281
rosa_laevigata	RLG00000017567
rosa_multiflora	Rmu_co8389809.1_g000001 Rmu_sc0006416.1_g000017
rosa_roxburghii	Rroxscaffold_2G00136470
rosa_rugosa	Rorug02G0141400
rosa_samantha	Rh2AG192400 Rh2BG204300 Rh2CG197600 Rh2DG199600
rosa_wichuraiana	Rw2G015220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	1 cut(s)	135
AciI	CCGC	1 cut(s)	133
AcoI	YGGCCR	2 cut(s)	277, 568
AcsI	RAATTY	1 cut(s)	518
AdeI	CACNNNGTG	1 cut(s)	28
AfaI	GTAC	2 cut(s)	166, 660
AfiI	CCNNNNNNNGG	1 cut(s)	731
AgsI	TTSAA	2 cut(s)	515, 538
AleI	CACNNNNGTG	1 cut(s)	59
AluBI	AGCT	5 cut(s)	20, 557, 656, 748, 753
AluI	AGCT	5 cut(s)	20, 557, 656, 748, 753
Alw26I	GTCTC	2 cut(s)	589, 676
AlwNI	CAGNNNCTG	1 cut(s)	764
AoxI	GGCC	2 cut(s)	277, 568
ApoI	RAATTY	1 cut(s)	518
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	2 cut(s)	46, 747
AsuII	TTCGAA	2 cut(s)	402, 429
AvaII	GGWCC	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	417
BbvCI	CCTCAGC	1 cut(s)	744
BccI	CCATC	3 cut(s)	443, 512, 725
BceAI	ACGGC	2 cut(s)	467, 494
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BcoDI	GTCTC	2 cut(s)	589, 676
BglII	AGATCT	2 cut(s)	247, 600
BlpI	GCTNAGC	1 cut(s)	749
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	111, 160
BpiI	GAAGAC	1 cut(s)	417
Bpu10I	CCTNAGC	2 cut(s)	463, 744
Bpu1102I	GCTNAGC	1 cut(s)	749
Bpu14I	TTCGAA	2 cut(s)	402, 429
BpuEI	CTTGAG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	373
BsaBI	GATNNNNATC	2 cut(s)	236, 735
BsaJI	CCNNGG	1 cut(s)	391
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	2 cut(s)	88, 662
Bse3DI	GCAATG	1 cut(s)	801
Bse8I	GATNNNNATC	2 cut(s)	236, 735
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	2 cut(s)	435, 777
BseJI	GATNNNNATC	2 cut(s)	236, 735
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseMI	GCAATG	1 cut(s)	801
BseMII	CTCAG	1 cut(s)	758
BseNI	ACTGG	2 cut(s)	88, 662
Bsh1236I	CGCG	1 cut(s)	135
Bsh1285I	CGRYCG	2 cut(s)	60, 196
BshFI	GGCC	2 cut(s)	279, 570
BsiEI	CGRYCG	2 cut(s)	60, 196
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	1 cut(s)	731
BsmAI	GTCTC	2 cut(s)	589, 676
BsmFI	GGGAC	1 cut(s)	531
BsnI	GGCC	2 cut(s)	279, 570
Bsp119I	TTCGAA	2 cut(s)	402, 429
Bsp143I	GATC	6 cut(s)	57, 193, 247, 328, 351, 600
Bsp1720I	GCTNAGC	1 cut(s)	749
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	2 cut(s)	279, 570
BspCNI	CTCAG	1 cut(s)	757
BspFNI	CGCG	1 cut(s)	135
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	2 cut(s)	111, 160
BspT104I	TTCGAA	2 cut(s)	402, 429
BsrDI	GCAATG	1 cut(s)	801
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	88, 662
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	6 cut(s)	57, 193, 247, 328, 351, 600
BssT1I	CCWWGG	1 cut(s)	391
Bst4CI	ACNGT	2 cut(s)	323, 619
Bst6I	CTCTTC	2 cut(s)	338, 539
BstBAI	YACGTR	1 cut(s)	373
BstBI	TTCGAA	2 cut(s)	402, 429
BstDEI	CTNAG	4 cut(s)	463, 652, 744, 749
BstF5I	GGATG	2 cut(s)	435, 777
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	6 cut(s)	60, 196, 250, 331, 354, 603
BstMAI	GTCTC	2 cut(s)	589, 676
BstMBI	GATC	6 cut(s)	57, 193, 247, 328, 351, 600
BstMCI	CGRYCG	2 cut(s)	60, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	479
BstSNI	TACGTA	1 cut(s)	373
BstUI	CGCG	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	2 cut(s)	247, 600
BstYI	RGATCY	2 cut(s)	247, 600
BsuRI	GGCC	2 cut(s)	279, 570
BtgZI	GCGATG	1 cut(s)	490
BtsCI	GGATG	2 cut(s)	435, 777
BtsIMutI	CAGTG	1 cut(s)	615
CaiI	CAGNNNCTG	1 cut(s)	764
CciI	TCATGA	1 cut(s)	348
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	2 cut(s)	124, 533
Csp6I	GTAC	2 cut(s)	165, 659
CviAII	CATG	5 cut(s)	154, 295, 349, 496, 592
CviQI	GTAC	2 cut(s)	165, 659
DdeI	CTNAG	4 cut(s)	463, 652, 744, 749
DpnI	GATC	6 cut(s)	59, 195, 249, 330, 353, 602
DpnII	GATC	6 cut(s)	57, 193, 247, 328, 351, 600
DraIII	CACNNNGTG	1 cut(s)	28
EaeI	YGGCCR	2 cut(s)	277, 568
Eam1104I	CTCTTC	2 cut(s)	338, 539
EarI	CTCTTC	2 cut(s)	338, 539
Eco105I	TACGTA	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	518
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	5 cut(s)	157, 298, 352, 499, 595
FaiI	YATR	9 cut(s)	97, 155, 296, 350, 497, 542, 554, 593, 809
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	5 cut(s)	153, 294, 348, 495, 591
FblI	GTMKAC	1 cut(s)	123
FokI	GGATG	2 cut(s)	422, 764
HaeIII	GGCC	2 cut(s)	279, 570
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	2 cut(s)	124, 533
Hin1II	CATG	5 cut(s)	157, 298, 352, 499, 595
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	5 cut(s)	260, 399, 500, 704, 761
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	2 cut(s)	46, 747
Hpy166II	GTNNAC	2 cut(s)	124, 376
Hpy188I	TCNGA	4 cut(s)	366, 440, 676, 730
Hpy188III	TCNNGA	7 cut(s)	45, 209, 253, 326, 349, 515, 548
Hpy8I	GTNNAC	2 cut(s)	124, 376
Hpy99I	CGWCG	6 cut(s)	128, 140, 488, 569, 713, 716
HpyAV	CCTTC	3 cut(s)	25, 206, 735
HpyCH4III	ACNGT	2 cut(s)	323, 619
HpyCH4IV	ACGT	2 cut(s)	27, 372
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	479
HpyF3I	CTNAG	4 cut(s)	463, 652, 744, 749
HpySE526I	ACGT	2 cut(s)	27, 372
Hsp92II	CATG	5 cut(s)	157, 298, 352, 499, 595
Kzo9I	GATC	6 cut(s)	57, 193, 247, 328, 351, 600
LmnI	GCTCC	2 cut(s)	158, 478
MaeII	ACGT	2 cut(s)	27, 372
MaeIII	GTNAC	6 cut(s)	68, 197, 587, 613, 626, 785
MalI	GATC	6 cut(s)	59, 195, 249, 330, 353, 602
MboI	GATC	6 cut(s)	57, 193, 247, 328, 351, 600
MboII	GAAGA	7 cut(s)	26, 257, 325, 422, 526, 674, 731
MflI	RGATCY	2 cut(s)	247, 600
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	1 cut(s)	518
MluNI	TGGCCA	1 cut(s)	279
MlyI	GAGTC	2 cut(s)	269, 494
MnlI	CCTC	4 cut(s)	152, 709, 753, 791
Mox20I	TGGCCA	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	3 cut(s)	318, 416, 645
MslI	CAYNNNNRTG	2 cut(s)	59, 806
Msp20I	TGGCCA	1 cut(s)	279
MspI	CCGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	479
NdeII	GATC	6 cut(s)	57, 193, 247, 328, 351, 600
NlaIII	CATG	5 cut(s)	157, 298, 352, 499, 595
NlaIV	GGNNCC	2 cut(s)	111, 160
NmuCI	GTSAC	5 cut(s)	68, 587, 613, 626, 785
NspV	TTCGAA	2 cut(s)	402, 429
OliI	CACNNNNGTG	1 cut(s)	59
PagI	TCATGA	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 144, 672
PfeI	GAWTC	3 cut(s)	399, 704, 761
Ple19I	CGATCG	2 cut(s)	60, 196
PleI	GAGTC	2 cut(s)	268, 494
PpsI	GAGTC	2 cut(s)	268, 494
Ppu21I	YACGTR	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	111, 160
PspPI	GGNCC	1 cut(s)	85
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	2 cut(s)	247, 600
PvuI	CGATCG	2 cut(s)	60, 196
RsaI	GTAC	2 cut(s)	166, 660
RsaNI	GTAC	2 cut(s)	165, 659
RseI	CAYNNNNRTG	2 cut(s)	59, 806
SalI	GTCGAC	1 cut(s)	122
SaqAI	TTAA	3 cut(s)	318, 416, 645
Sau3AI	GATC	6 cut(s)	57, 193, 247, 328, 351, 600
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	2 cut(s)	269, 494
SfuI	TTCGAA	2 cut(s)	402, 429
SinI	GGWCC	1 cut(s)	85
SmiMI	CAYNNNNRTG	2 cut(s)	59, 806
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SnaBI	TACGTA	1 cut(s)	373
Sse9I	AATT	1 cut(s)	518
SsiI	CCGC	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	2 cut(s)	323, 619
TaiI	ACGT	2 cut(s)	30, 375
TaqI	TCGA	8 cut(s)	123, 186, 192, 210, 225, 402, 429, 714
TasI	AATT	1 cut(s)	518
TfiI	GAWTC	3 cut(s)	399, 704, 761
Tru1I	TTAA	3 cut(s)	318, 416, 645
Tru9I	TTAA	3 cut(s)	318, 416, 645
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	5 cut(s)	68, 587, 613, 626, 785
Tsp45I	GTSAC	5 cut(s)	68, 587, 613, 626, 785
TspGWI	ACGGA	5 cut(s)	98, 553, 612, 697, 773
TspRI	CASTG	1 cut(s)	622
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	1 cut(s)	518
XmiI	GTMKAC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.