Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013318

Physical Location & Seq

Genomic Coordinates Forward (+)

74175708 .. 74178040

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGAATAGTGGCGGAAGCTCACAACGTTCGTGTTCTCGGGTCGGGTCAACAGGTCGTAGTCCTCGCCCACGGTTTCGGAACCGACCAGTCCGTCTGGAAGCACCTTGTCCCCCGCCTTGTCGACGACTACCGGGTCGTCATGTACGACAACATGGGCGCCGGAACCACCAACCCCGACTACTTTGATTTCGAGCGCTACTCCACGCTCGAGGGCTACGCGTACGACTTACTCGCCATCCTCGAAGAGTTTCAGGTCCAGAGTTGCATCTTTGTGGGTCACTCTGTTTCCGCCATGATTGGCTCCATCGCCGCCGTCATGAGGCCGGAGCTTTTCTTTAAGCTCGTTATGATCGCCGCCTCTCCAAGGTATCTGAACGACCCGGATTACTACGGAGGCTTCGAGGAAGAAGACCTACAACAACTCTTCGAAGCCATCCGCTCAAACTACAAGGCCTGGTGCGCCGGCTTTGCCCCGCTCGCCGTGGGTGGCGACATGGACTCGGTGGCCGTCCAAGAGTTTAGCCGGACCCTATTCAACATGCGGCCCGACATAGCCCTCAGCGTGGCCCAGACCATTTTCCAAAGCGACACGAGACAGATCATGGGCATGGTCACGGTGCCTTGCCACATACTCCAGAGTGTTAAGGACTTGGCGGTGCCGGTGGTGGTGTCGGAGTACCTGCACCAGAATTTGGGGGTGTGTCGATCGTGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009791 GO:0032501 GO:0032502 GO:0036377 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0048856 GO:0050896 GO:0051704 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

239

Amino Acids

26.71

Weight (kDa)

4.86

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	17 - 233	2e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	19 - 229	4.6e-13	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	20 - 155	2.5e-12	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37470
fragaria_vesca	FvH4_1g17110
malus_domestica	MD02G1181300.v1.1 MD02G1181500.v1.1
prunus_persica	Prupe.6G225000_v2.0.a1
pyrus_communis	pycom02g14720 pycom02g14730
rosa_chinensis	RchiOBHm_Chr2g0107281
rosa_laevigata	RLG00000017567
rosa_multiflora	Rmu_co8389809.1_g000001 Rmu_sc0006416.1_g000017
rosa_roxburghii	Rroxscaffold_2G00136470
rosa_rugosa	Rorug02G0141400
rosa_samantha	Rh2AG192400 Rh2BG204300 Rh2CG197600 Rh2DG199600
rosa_wichuraiana	Rw2G015220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	92, 134
Acc36I	ACCTGC	1 cut(s)	690
AccB1I	GGYRCC	3 cut(s)	158, 619, 658
AccB7I	CCANNNNNTGG	1 cut(s)	694
AccBSI	CCGCTC	2 cut(s)	441, 478
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	1 cut(s)	221
AciI	CCGC	9 cut(s)	14, 115, 291, 312, 357, 439, 476, 544, 656
AclI	AACGTT	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	1 cut(s)	691
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	3 cut(s)	146, 224, 680
AfeI	AGCGCT	1 cut(s)	197
AfiI	CCNNNNNNNGG	4 cut(s)	321, 366, 565, 694
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	1 cut(s)	538
AjnI	CCWGG	1 cut(s)	455
AluBI	AGCT	3 cut(s)	20, 331, 343
AluI	AGCT	3 cut(s)	20, 331, 343
Alw26I	GTCTC	1 cut(s)	589
Ama87I	CYCGRG	2 cut(s)	38, 209
Aor51HI	AGCGCT	1 cut(s)	197
AoxI	GGCC	5 cut(s)	323, 453, 507, 545, 567
ApoI	RAATTY	1 cut(s)	691
Asp700I	GAANNNNTTC	1 cut(s)	249
AspLEI	GCGC	3 cut(s)	161, 198, 464
AspS9I	GGNCC	4 cut(s)	256, 528, 546, 568
AsuC2I	CCSGG	2 cut(s)	134, 383
AsuII	TTCGAA	1 cut(s)	429
AvaI	CYCGRG	2 cut(s)	38, 209
AvaII	GGWCC	2 cut(s)	256, 528
BanI	GGYRCC	3 cut(s)	158, 619, 658
BarI	GAAGNNNNNNTAC	2 cut(s)	399, 431
BauI	CACGAG	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	417
BbvCI	CCTCAGC	1 cut(s)	560
BccI	CCATC	3 cut(s)	245, 314, 443
BceAI	ACGGC	3 cut(s)	299, 467, 494
BciT130I	CCWGG	1 cut(s)	457
BcnI	CCSGG	2 cut(s)	134, 383
BcoDI	GTCTC	1 cut(s)	589
BfoI	RGCGCY	2 cut(s)	162, 199
BfuAI	ACCTGC	1 cut(s)	690
BisI	GCNGC	3 cut(s)	312, 357, 545
BlsI	GCNGC	3 cut(s)	313, 358, 546
Bme1390I	CCNGG	3 cut(s)	134, 383, 457
Bme18I	GGWCC	2 cut(s)	256, 528
BmeT110I	CYCGRG	2 cut(s)	38, 209
BmgT120I	GGNCC	4 cut(s)	256, 528, 546, 568
BmiI	GGNNCC	7 cut(s)	82, 160, 166, 304, 530, 621, 660
BmrFI	CCNGG	3 cut(s)	134, 383, 457
BmsI	GCATC	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	417
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpmI	CTGGAG	1 cut(s)	620
Bpu10I	CCTNAGC	1 cut(s)	560
Bpu14I	TTCGAA	1 cut(s)	429
BpuMI	CCSGG	2 cut(s)	134, 383
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	70, 365, 483
Bsc4I	CCNNNNNNNGG	4 cut(s)	321, 366, 565, 694
Bse118I	RCCGGY	2 cut(s)	464, 661
Bse1I	ACTGG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	457
BseDI	CCNNGG	3 cut(s)	70, 365, 483
BseGI	GGATG	2 cut(s)	237, 435
BseLI	CCNNNNNNNGG	4 cut(s)	321, 366, 565, 694
BseMII	CTCAG	1 cut(s)	574
BseNI	ACTGG	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	668
Bsh1236I	CGCG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	710
BshFI	GGCC	5 cut(s)	325, 455, 509, 547, 569
BshNI	GGYRCC	3 cut(s)	158, 619, 658
BsiEI	CGRYCG	1 cut(s)	710
BsiHKCI	CYCGRG	2 cut(s)	38, 209
BsiSI	CCGG	7 cut(s)	133, 162, 326, 383, 465, 526, 662
BsiWI	CGTACG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	4 cut(s)	321, 366, 565, 694
BsmAI	GTCTC	1 cut(s)	589
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	5 cut(s)	325, 455, 509, 547, 569
BsoBI	CYCGRG	2 cut(s)	38, 209
Bsp119I	TTCGAA	1 cut(s)	429
Bsp143I	GATC	3 cut(s)	351, 600, 707
BspACI	CCGC	9 cut(s)	14, 115, 291, 312, 357, 439, 476, 544, 656
BspANI	GGCC	5 cut(s)	325, 455, 509, 547, 569
BspCNI	CTCAG	1 cut(s)	573
BspFNI	CGCG	1 cut(s)	221
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	7 cut(s)	82, 160, 166, 304, 530, 621, 660
BspMI	ACCTGC	1 cut(s)	690
BspT104I	TTCGAA	1 cut(s)	429
BspT107I	GGYRCC	3 cut(s)	158, 619, 658
BsrBI	CCGCTC	2 cut(s)	441, 478
BsrFI	RCCGGY	2 cut(s)	464, 661
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	2 cut(s)	464, 661
BssECI	CCNNGG	3 cut(s)	70, 365, 483
BssMI	GATC	3 cut(s)	351, 600, 707
BssNI	GRCGYC	1 cut(s)	159
BssSI	CACGAG	1 cut(s)	592
BssT1I	CCWWGG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	592
Bst2UI	CCWGG	1 cut(s)	457
Bst4CI	ACNGT	2 cut(s)	74, 619
Bst6I	CTCTTC	2 cut(s)	240, 431
BstACI	GRCGYC	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	466, 480
BstDEI	CTNAG	1 cut(s)	560
BstDSI	CCRYGG	2 cut(s)	70, 483
BstENI	CCTNNNNNAGG	1 cut(s)	364
BstF5I	GGATG	2 cut(s)	237, 435
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	2 cut(s)	162, 199
BstHHI	GCGC	3 cut(s)	161, 198, 464
BstKTI	GATC	3 cut(s)	354, 603, 710
BstMAI	GTCTC	1 cut(s)	589
BstMBI	GATC	3 cut(s)	351, 600, 707
BstMCI	CGRYCG	1 cut(s)	710
BstMWI	GCNNNNNNNGC	3 cut(s)	461, 470, 479
BstNI	CCWGG	1 cut(s)	457
BstNSI	RCATGY	1 cut(s)	544
BstSCI	CCNGG	3 cut(s)	132, 381, 455
BstUI	CGCG	1 cut(s)	221
BstV2I	GAAGAC	1 cut(s)	417
BsuRI	GGCC	5 cut(s)	325, 455, 509, 547, 569
BtgI	CCRYGG	2 cut(s)	70, 483
BtgZI	GCGATG	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	237, 435
BveI	ACCTGC	1 cut(s)	690
Cac8I	GCNNGC	2 cut(s)	466, 480
CciI	TCATGA	1 cut(s)	318
CfoI	GCGC	3 cut(s)	161, 198, 464
Cfr10I	RCCGGY	2 cut(s)	464, 661
Cfr13I	GGNCC	4 cut(s)	256, 528, 546, 568
Csp6I	GTAC	3 cut(s)	145, 223, 679
CviAII	CATG	8 cut(s)	142, 154, 295, 319, 496, 541, 604, 610
CviQI	GTAC	3 cut(s)	145, 223, 679
DdeI	CTNAG	1 cut(s)	560
DinI	GGCGCC	1 cut(s)	160
DpnI	GATC	3 cut(s)	353, 602, 709
DpnII	GATC	3 cut(s)	351, 600, 707
DrdI	GACNNNNNNGTC	2 cut(s)	92, 134
DseDI	GACNNNNNNGTC	2 cut(s)	92, 134
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	2 cut(s)	240, 431
EarI	CTCTTC	2 cut(s)	240, 431
EciI	GGCGGA	2 cut(s)	29, 280
Eco130I	CCWWGG	1 cut(s)	365
Eco147I	AGGCCT	1 cut(s)	455
Eco47I	GGWCC	2 cut(s)	256, 528
Eco47III	AGCGCT	1 cut(s)	197
Eco88I	CYCGRG	2 cut(s)	38, 209
EcoNI	CCTNNNNNAGG	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	455
EcoT14I	CCWWGG	1 cut(s)	365
EgeI	GGCGCC	1 cut(s)	160
EheI	GGCGCC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	8 cut(s)	145, 157, 298, 322, 499, 544, 607, 613
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	8 cut(s)	141, 153, 294, 318, 495, 540, 603, 609
FauI	CCCGC	2 cut(s)	122, 483
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	3 cut(s)	312, 357, 545
FokI	GGATG	2 cut(s)	224, 422
Fsp4HI	GCNGC	3 cut(s)	312, 357, 545
GlaI	GCGC	3 cut(s)	160, 197, 463
GluI	GCNGC	3 cut(s)	312, 357, 545
GsuI	CTGGAG	1 cut(s)	620
HaeII	RGCGCY	2 cut(s)	162, 199
HaeIII	GGCC	5 cut(s)	325, 455, 509, 547, 569
HapII	CCGG	7 cut(s)	133, 162, 326, 383, 465, 526, 662
HhaI	GCGC	3 cut(s)	161, 198, 464
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	8 cut(s)	145, 157, 298, 322, 499, 544, 607, 613
Hin6I	GCGC	3 cut(s)	159, 196, 462
HinP1I	GCGC	3 cut(s)	159, 196, 462
HincII	GTYRAC	2 cut(s)	50, 124
HindII	GTYRAC	2 cut(s)	50, 124
HinfI	GANTC	1 cut(s)	500
HpaII	CCGG	7 cut(s)	133, 162, 326, 383, 465, 526, 662
Hpy166II	GTNNAC	2 cut(s)	50, 124
Hpy188I	TCNGA	3 cut(s)	80, 375, 676
Hpy188III	TCNNGA	4 cut(s)	97, 259, 319, 637
Hpy8I	GTNNAC	2 cut(s)	50, 124
Hpy99I	CGWCG	1 cut(s)	128
HpyCH4III	ACNGT	2 cut(s)	74, 619
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	267, 685
HpyF10VI	GCNNNNNNNGC	3 cut(s)	461, 470, 479
HpyF3I	CTNAG	1 cut(s)	560
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	8 cut(s)	145, 157, 298, 322, 499, 544, 607, 613
HspAI	GCGC	3 cut(s)	159, 196, 462
KasI	GGCGCC	1 cut(s)	158
KroI	GCCGGC	1 cut(s)	464
KroNI	GCCGGC	1 cut(s)	466
Kzo9I	GATC	3 cut(s)	351, 600, 707
LmnI	GCTCC	2 cut(s)	308, 328
LweI	GCATC	1 cut(s)	276
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	278, 613
MalI	GATC	3 cut(s)	353, 602, 709
MbiI	CCGCTC	2 cut(s)	441, 478
MboI	GATC	3 cut(s)	351, 600, 707
MboII	GAAGA	4 cut(s)	257, 418, 419, 422
MluCI	AATT	1 cut(s)	691
MluI	ACGCGT	1 cut(s)	219
Mly113I	GGCGCC	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	654
MnlI	CCTC	9 cut(s)	74, 205, 251, 315, 370, 389, 397, 569, 708
MroNI	GCCGGC	1 cut(s)	464
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	2 cut(s)	339, 645
MslI	CAYNNNNRTG	2 cut(s)	272, 608
MspI	CCGG	7 cut(s)	133, 162, 326, 383, 465, 526, 662
MspR9I	CCNGG	3 cut(s)	134, 383, 457
MvaI	CCWGG	1 cut(s)	457
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	3 cut(s)	461, 470, 479
NaeI	GCCGGC	1 cut(s)	466
NarI	GGCGCC	1 cut(s)	159
NciI	CCSGG	2 cut(s)	134, 383
NdeII	GATC	3 cut(s)	351, 600, 707
NgoMIV	GCCGGC	1 cut(s)	464
NlaIII	CATG	8 cut(s)	145, 157, 298, 322, 499, 544, 607, 613
NlaIV	GGNNCC	7 cut(s)	82, 160, 166, 304, 530, 621, 660
NmuCI	GTSAC	2 cut(s)	278, 613
NspI	RCATGY	1 cut(s)	544
NspV	TTCGAA	1 cut(s)	429
PaeR7I	CTCGAG	1 cut(s)	209
PagI	TCATGA	1 cut(s)	318
PceI	AGGCCT	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 240, 399
PdiI	GCCGGC	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	249
Pfl23II	CGTACG	1 cut(s)	222
PflMI	CCANNNNNTGG	1 cut(s)	694
PkrI	GCNGC	3 cut(s)	313, 358, 546
Ple19I	CGATCG	1 cut(s)	710
PleI	GAGTC	1 cut(s)	494
PluTI	GGCGCC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	494
Psp1406I	AACGTT	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	455
PspLI	CGTACG	1 cut(s)	222
PspN4I	GGNNCC	7 cut(s)	82, 160, 166, 304, 530, 621, 660
PspPI	GGNCC	4 cut(s)	256, 528, 546, 568
PspXI	VCTCGAGB	1 cut(s)	209
PvuI	CGATCG	1 cut(s)	710
RsaI	GTAC	3 cut(s)	146, 224, 680
RsaNI	GTAC	3 cut(s)	145, 223, 679
RseI	CAYNNNNRTG	2 cut(s)	272, 608
SalI	GTCGAC	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	339, 645
SatI	GCNGC	3 cut(s)	312, 357, 545
Sau3AI	GATC	3 cut(s)	351, 600, 707
Sau96I	GGNCC	4 cut(s)	256, 528, 546, 568
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	3 cut(s)	134, 383, 457
SfaNI	GCATC	1 cut(s)	276
SfoI	GGCGCC	1 cut(s)	160
Sfr274I	CTCGAG	1 cut(s)	209
SfuI	TTCGAA	1 cut(s)	429
SinI	GGWCC	2 cut(s)	256, 528
SlaI	CTCGAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	2 cut(s)	272, 608
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	691
SseBI	AGGCCT	1 cut(s)	455
SsiI	CCGC	9 cut(s)	14, 115, 291, 312, 357, 439, 476, 544, 656
SspDI	GGCGCC	1 cut(s)	158
StuI	AGGCCT	1 cut(s)	455
StyD4I	CCNGG	3 cut(s)	132, 381, 455
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	74, 619
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	7 cut(s)	123, 192, 210, 243, 402, 429, 706
TasI	AATT	1 cut(s)	691
TauI	GCSGC	3 cut(s)	314, 359, 547
Tru1I	TTAA	2 cut(s)	339, 645
Tru9I	TTAA	2 cut(s)	339, 645
TseFI	GTSAC	2 cut(s)	278, 613
Tsp45I	GTSAC	2 cut(s)	278, 613
TspGWI	ACGGA	2 cut(s)	82, 408
Van91I	CCANNNNNTGG	1 cut(s)	694
VpaK11BI	GGWCC	2 cut(s)	256, 528
XagI	CCTNNNNNAGG	1 cut(s)	364
XapI	RAATTY	1 cut(s)	691
XceI	RCATGY	1 cut(s)	544
XhoI	CTCGAG	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.