Prupe.6G225000_v2.0.a1

Sigma factor sigB regulation protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
22944832 .. 22946466
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G225000.1

Sequence Viewer

Length: 813 bp
ATGGGAATTGTAGAAGAAGCTCACAACTTGCGGGTCCTGGGCTCAGGCCAGCAGGTCATAGTCCTAGCCCACGGCTTCGGCACCGACCAGTCGGTCTGGAAGCACCTCGTCCCCCACCTCGTCGACGACTACAGAGTCGTCATGTACGACAACATGGGCGCCGGAACGACAAACCCCGAATACTTCGACTTCGAGCGCTACGCCACCCTCGAGGGCTACGCCTACGACCTCCTCGCCATTCTGGAGGAGCTTCGGATCGGGTCTTGCATCTTCGTTGGCCACTCCGTCTCCGGCATGGTCGGCGCCATCGCCGCCATCACCCGCCCCGACCTCTTCACCAAGCTCGTCATGGTCGGCGCCTCTCCTAGGTATCTCAACGACGTCGACTACTACGGCGGGTTCGAGCAGGAAGATCTGGAGCAGCTGTTCGATGCCATCCGATCCAACTACAAGGCTTGGTGCTCTGGTTTCGCACCCATGGCGGTCGGCGGGGACTTGGACTCGGTGGCGGTCCAGGAGTTCAGCCGGACCCTCTTCAACATGCGCCCCGACATTGCCCTCAGCGTCGCCCAAACCATCTTCCAGAGTGACACGAGACAAATTCTCCATCTGATCACAGTGCCCTGCCACATTTTGCAGAGCGTAAAAGACCTCGCTGTCCCTGTCGTCGTCACAGAGTATCTGCACCAGAATCTGGGCGGCGAGTCGATCGTGGAGGTCATGTCATCGGACGGTCATCTTCCGCAGCTGAGCTCGCCGGATATTGTTATCCCGGTGATGCTCCGGCACATTAGATATGATATTGCGGCGTAA

Protein Analysis

271

Amino Acids

29.88

Weight (kDa)

4.77

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013318)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 92, 134, 656
AatII GACGTC 1 cut(s) 384
AbsI CCTCGAGG 1 cut(s) 209
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 4 cut(s) 80, 158, 302, 356
AccB7I CCANNNNNTGG 1 cut(s) 694
AccI GTMKAC 2 cut(s) 123, 384
AclWI GGATC 2 cut(s) 263, 435
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 1 cut(s) 600
AcyI GRCGYC 4 cut(s) 159, 303, 357, 381
AfaI GTAC 1 cut(s) 146
AfeI AGCGCT 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 366, 694
AgsI TTSAA 1 cut(s) 538
AjnI CCWGG 2 cut(s) 36, 513
AloI GAACNNNNNNTCC 2 cut(s) 410, 442
AluBI AGCT 6 cut(s) 20, 250, 343, 424, 748, 753
AluI AGCT 6 cut(s) 20, 250, 343, 424, 748, 753
Alw21I GWGCWC 2 cut(s) 464, 755
Alw26I GTCTC 2 cut(s) 292, 589
AlwI GGATC 2 cut(s) 263, 435
AlwNI CAGNNNCTG 1 cut(s) 694
Ama87I CYCGRG 1 cut(s) 209
Aor51HI AGCGCT 1 cut(s) 197
AoxI GGCC 2 cut(s) 46, 277
ApeKI GCWGC 2 cut(s) 421, 745
ApoI RAATTY 1 cut(s) 600
AspA2I CCTAGG 1 cut(s) 365
AspLEI GCGC 5 cut(s) 161, 198, 305, 359, 546
AspS9I GGNCC 3 cut(s) 34, 511, 528
AsuC2I CCSGG 1 cut(s) 773
AsuHPI GGTGA 3 cut(s) 310, 328, 787
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 3 cut(s) 34, 511, 528
AvrII CCTAGG 1 cut(s) 365
BaeGI GKGCMC 1 cut(s) 624
BalI TGGCCA 1 cut(s) 279
BanI GGYRCC 4 cut(s) 80, 158, 302, 356
BanII GRGCYC 2 cut(s) 44, 755
BauI CACGAG 1 cut(s) 592
Bbv12I GWGCWC 2 cut(s) 464, 755
BbvCI CCTCAGC 1 cut(s) 560
BbvI GCAGC 2 cut(s) 433, 757
BccI CCATC 5 cut(s) 314, 323, 443, 584, 615
BceAI ACGGC 2 cut(s) 88, 409
BciT130I CCWGG 2 cut(s) 38, 515
BclI TGATCA 1 cut(s) 612
BcnI CCSGG 1 cut(s) 773
BcoDI GTCTC 2 cut(s) 292, 589
BfaI CTAG 2 cut(s) 65, 366
BfmI CTRYAG 1 cut(s) 130
BfoI RGCGCY 4 cut(s) 162, 199, 306, 360
BfuAI ACCTGC 1 cut(s) 43
BglII AGATCT 1 cut(s) 412
BisI GCNGC 5 cut(s) 312, 422, 700, 746, 807
BlnI CCTAGG 1 cut(s) 365
BlpI GCTNAGC 1 cut(s) 749
BlsI GCNGC 5 cut(s) 313, 423, 701, 747, 808
Bme1390I CCNGG 3 cut(s) 38, 515, 773
Bme18I GGWCC 3 cut(s) 34, 511, 528
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 3 cut(s) 34, 511, 528
BmiI GGNNCC 6 cut(s) 35, 82, 160, 304, 358, 530
BmrFI CCNGG 3 cut(s) 38, 515, 773
BmsI GCATC 3 cut(s) 276, 421, 768
BpmI CTGGAG 2 cut(s) 263, 437
Bpu10I CCTNAGC 2 cut(s) 43, 560
Bpu1102I GCTNAGC 1 cut(s) 749
BpuMI CCSGG 1 cut(s) 773
BsaHI GRCGYC 4 cut(s) 159, 303, 357, 381
BsaJI CCNNGG 4 cut(s) 37, 70, 365, 477
BsaXI ACNNNNNCTCC 8 cut(s) 272, 302, 410, 440, 588, 618, 707, 737
Bsc4I CCNNNNNNNGG 2 cut(s) 366, 694
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 552
BseBI CCWGG 2 cut(s) 38, 515
BseDI CCNNGG 4 cut(s) 37, 70, 365, 477
BseGI GGATG 1 cut(s) 435
BseLI CCNNNNNNNGG 2 cut(s) 366, 694
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 3 cut(s) 57, 574, 740
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 2 cut(s) 221, 260
BseSI GKGCMC 1 cut(s) 624
BseXI GCAGC 2 cut(s) 433, 757
BsgI GTGCAG 1 cut(s) 668
Bsh1285I CGRYCG 2 cut(s) 486, 711
BshFI GGCC 2 cut(s) 48, 279
BshNI GGYRCC 4 cut(s) 80, 158, 302, 356
BsiEI CGRYCG 2 cut(s) 486, 711
BsiHKAI GWGCWC 2 cut(s) 464, 755
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 6 cut(s) 162, 291, 526, 758, 773, 784
BslFI GGGAC 3 cut(s) 95, 506, 644
BslI CCNNNNNNNGG 2 cut(s) 366, 694
BsmAI GTCTC 2 cut(s) 292, 589
BsmBI CGTCTC 1 cut(s) 292
BsmFI GGGAC 3 cut(s) 95, 506, 644
BsnI GGCC 2 cut(s) 48, 279
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 4 cut(s) 44, 464, 624, 755
Bsp143I GATC 5 cut(s) 255, 412, 440, 612, 708
Bsp1720I GCTNAGC 1 cut(s) 749
Bsp19I CCATGG 1 cut(s) 477
BspANI GGCC 2 cut(s) 48, 279
BspCNI CTCAG 3 cut(s) 56, 573, 741
BspLI GGNNCC 6 cut(s) 35, 82, 160, 304, 358, 530
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 2 cut(s) 263, 435
BspT107I GGYRCC 4 cut(s) 80, 158, 302, 356
BsrDI GCAATG 1 cut(s) 552
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 4 cut(s) 37, 70, 365, 477
BssMI GATC 5 cut(s) 255, 412, 440, 612, 708
BssNI GRCGYC 4 cut(s) 159, 303, 357, 381
BssSI CACGAG 1 cut(s) 592
BssT1I CCWWGG 2 cut(s) 365, 477
Bst2BI CACGAG 1 cut(s) 592
Bst2UI CCWGG 2 cut(s) 38, 515
Bst4CI ACNGT 2 cut(s) 619, 734
Bst6I CTCTTC 2 cut(s) 338, 539
BstACI GRCGYC 4 cut(s) 159, 303, 357, 381
BstC8I GCNNGC 2 cut(s) 50, 755
BstDEI CTNAG 3 cut(s) 43, 560, 749
BstDSI CCRYGG 2 cut(s) 70, 477
BstENI CCTNNNNNAGG 1 cut(s) 364
BstF5I GGATG 1 cut(s) 435
BstH2I RGCGCY 4 cut(s) 162, 199, 306, 360
BstHHI GCGC 5 cut(s) 161, 198, 305, 359, 546
BstKTI GATC 5 cut(s) 258, 415, 443, 615, 711
BstMAI GTCTC 2 cut(s) 292, 589
BstMBI GATC 5 cut(s) 255, 412, 440, 612, 708
BstMCI CGRYCG 2 cut(s) 486, 711
BstMWI GCNNNNNNNGC 4 cut(s) 300, 311, 479, 754
BstNI CCWGG 2 cut(s) 38, 515
BstNSI RCATGY 1 cut(s) 544
BstSCI CCNGG 3 cut(s) 36, 513, 771
BstSFI CTRYAG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 624
BstV1I GCAGC 2 cut(s) 433, 757
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuRI GGCC 2 cut(s) 48, 279
BtgI CCRYGG 2 cut(s) 70, 477
BtgZI GCGATG 1 cut(s) 292
BtsCI GGATG 1 cut(s) 435
BtsIMutI CAGTG 1 cut(s) 624
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 2 cut(s) 50, 755
CaiI CAGNNNCTG 1 cut(s) 694
CfoI GCGC 5 cut(s) 161, 198, 305, 359, 546
Cfr13I GGNCC 3 cut(s) 34, 511, 528
CseI GACGC 1 cut(s) 553
Csp6I GTAC 1 cut(s) 145
CviAII CATG 7 cut(s) 142, 154, 295, 349, 478, 541, 721
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 3 cut(s) 43, 560, 749
DinI GGCGCC 3 cut(s) 160, 304, 358
DpnI GATC 5 cut(s) 257, 414, 442, 614, 710
DpnII GATC 5 cut(s) 255, 412, 440, 612, 708
DrdI GACNNNNNNGTC 3 cut(s) 92, 134, 656
DseDI GACNNNNNNGTC 3 cut(s) 92, 134, 656
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 2 cut(s) 338, 539
EarI CTCTTC 2 cut(s) 338, 539
Ecl136II GAGCTC 1 cut(s) 753
Eco130I CCWWGG 2 cut(s) 365, 477
Eco24I GRGCYC 2 cut(s) 44, 755
Eco47I GGWCC 3 cut(s) 34, 511, 528
Eco47III AGCGCT 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 753
Eco88I CYCGRG 1 cut(s) 209
EcoICRI GAGCTC 1 cut(s) 753
EcoNI CCTNNNNNAGG 1 cut(s) 364
EcoO109I RGGNCCY 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 36, 513
EcoT14I CCWWGG 2 cut(s) 365, 477
EcoT38I GRGCYC 2 cut(s) 44, 755
EgeI GGCGCC 3 cut(s) 160, 304, 358
EheI GGCGCC 3 cut(s) 160, 304, 358
ErhI CCWWGG 2 cut(s) 365, 477
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 7 cut(s) 145, 157, 298, 352, 481, 544, 724
FaiI YATR 9 cut(s) 59, 143, 155, 296, 350, 479, 542, 722, 798
FaqI GGGAC 3 cut(s) 95, 506, 644
FatI CATG 7 cut(s) 141, 153, 294, 348, 477, 540, 720
FauI CCCGC 4 cut(s) 24, 329, 389, 482
FbaI TGATCA 1 cut(s) 612
FblI GTMKAC 2 cut(s) 123, 384
Fnu4HI GCNGC 5 cut(s) 312, 422, 700, 746, 807
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 2 cut(s) 44, 755
Fsp4HI GCNGC 5 cut(s) 312, 422, 700, 746, 807
FspBI CTAG 2 cut(s) 65, 366
GlaI GCGC 5 cut(s) 160, 197, 304, 358, 545
GluI GCNGC 5 cut(s) 312, 422, 700, 746, 807
GsuI CTGGAG 2 cut(s) 263, 437
HaeII RGCGCY 4 cut(s) 162, 199, 306, 360
HaeIII GGCC 2 cut(s) 48, 279
HapII CCGG 6 cut(s) 162, 291, 526, 758, 773, 784
HgaI GACGC 1 cut(s) 553
HhaI GCGC 5 cut(s) 161, 198, 305, 359, 546
Hin1I GRCGYC 4 cut(s) 159, 303, 357, 381
Hin1II CATG 7 cut(s) 145, 157, 298, 352, 481, 544, 724
Hin6I GCGC 5 cut(s) 159, 196, 303, 357, 544
HinP1I GCGC 5 cut(s) 159, 196, 303, 357, 544
HincII GTYRAC 2 cut(s) 124, 385
HindII GTYRAC 2 cut(s) 124, 385
HinfI GANTC 4 cut(s) 135, 500, 691, 704
HpaII CCGG 6 cut(s) 162, 291, 526, 758, 773, 784
HphI GGTGA 3 cut(s) 310, 328, 787
Hpy166II GTNNAC 2 cut(s) 124, 385
Hpy188I TCNGA 4 cut(s) 255, 440, 612, 730
Hpy188III TCNNGA 4 cut(s) 97, 242, 416, 583
Hpy8I GTNNAC 2 cut(s) 124, 385
Hpy99I CGWCG 6 cut(s) 125, 128, 383, 386, 569, 671
HpyCH4III ACNGT 2 cut(s) 619, 734
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 3 cut(s) 267, 637, 685
HpyF10VI GCNNNNNNNGC 4 cut(s) 300, 311, 479, 754
HpyF3I CTNAG 3 cut(s) 43, 560, 749
HpySE526I ACGT 1 cut(s) 381
Hsp92I GRCGYC 4 cut(s) 159, 303, 357, 381
Hsp92II CATG 7 cut(s) 145, 157, 298, 352, 481, 544, 724
HspAI GCGC 5 cut(s) 159, 196, 303, 357, 544
KasI GGCGCC 3 cut(s) 158, 302, 356
Ksp22I TGATCA 1 cut(s) 612
Kzo9I GATC 5 cut(s) 255, 412, 440, 612, 708
LmnI GCTCC 3 cut(s) 247, 418, 786
Lsp1109I GCAGC 2 cut(s) 433, 757
LweI GCATC 3 cut(s) 276, 421, 768
MaeI CTAG 2 cut(s) 65, 366
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 2 cut(s) 587, 670
MalI GATC 5 cut(s) 257, 414, 442, 614, 710
MboI GATC 5 cut(s) 255, 412, 440, 612, 708
MboII GAAGA 7 cut(s) 26, 262, 325, 422, 526, 571, 731
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 4 cut(s) 44, 464, 624, 755
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 2 cut(s) 6, 600
MluNI TGGCCA 1 cut(s) 279
Mly113I GGCGCC 3 cut(s) 159, 303, 357
MlyI GAGTC 3 cut(s) 144, 494, 713
MmeI TCCRAC 1 cut(s) 468
Mox20I TGGCCA 1 cut(s) 279
MscI TGGCCA 1 cut(s) 279
Msp20I TGGCCA 1 cut(s) 279
MspA1I CMGCKG 2 cut(s) 424, 748
MspI CCGG 6 cut(s) 162, 291, 526, 758, 773, 784
MspR9I CCNGG 3 cut(s) 38, 515, 773
MvaI CCWGG 2 cut(s) 38, 515
MwoI GCNNNNNNNGC 4 cut(s) 300, 311, 479, 754
NarI GGCGCC 3 cut(s) 159, 303, 357
NciI CCSGG 1 cut(s) 773
NcoI CCATGG 1 cut(s) 477
NdeII GATC 5 cut(s) 255, 412, 440, 612, 708
NlaIII CATG 7 cut(s) 145, 157, 298, 352, 481, 544, 724
NlaIV GGNNCC 6 cut(s) 35, 82, 160, 304, 358, 530
NmuCI GTSAC 2 cut(s) 587, 670
NspI RCATGY 1 cut(s) 544
PaeR7I CTCGAG 1 cut(s) 209
PcsI WCGNNNNNNNCGW 3 cut(s) 144, 207, 399
PfeI GAWTC 1 cut(s) 691
PflMI CCANNNNNTGG 1 cut(s) 694
PfoI TCCNGGA 1 cut(s) 513
PkrI GCNGC 5 cut(s) 313, 423, 701, 747, 808
Ple19I CGATCG 1 cut(s) 711
PleI GAGTC 3 cut(s) 143, 494, 712
PluTI GGCGCC 3 cut(s) 162, 306, 360
PpsI GAGTC 3 cut(s) 143, 494, 712
PpuMI RGGWCCY 1 cut(s) 34
Psp124BI GAGCTC 1 cut(s) 755
Psp5II RGGWCCY 1 cut(s) 34
Psp6I CCWGG 2 cut(s) 36, 513
PspGI CCWGG 2 cut(s) 36, 513
PspN4I GGNNCC 6 cut(s) 35, 82, 160, 304, 358, 530
PspPI GGNCC 3 cut(s) 34, 511, 528
PspPPI RGGWCCY 1 cut(s) 34
PspXI VCTCGAGB 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 694
PsuI RGATCY 1 cut(s) 412
PvuI CGATCG 1 cut(s) 711
PvuII CAGCTG 2 cut(s) 424, 748
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SacI GAGCTC 1 cut(s) 755
SalI GTCGAC 2 cut(s) 122, 383
SatI GCNGC 5 cut(s) 312, 422, 700, 746, 807
Sau3AI GATC 5 cut(s) 255, 412, 440, 612, 708
Sau96I GGNCC 3 cut(s) 34, 511, 528
SchI GAGTC 3 cut(s) 144, 494, 713
ScrFI CCNGG 3 cut(s) 38, 515, 773
SduI GDGCHC 4 cut(s) 44, 464, 624, 755
SfaNI GCATC 3 cut(s) 276, 421, 768
SfcI CTRYAG 1 cut(s) 130
SfoI GGCGCC 3 cut(s) 160, 304, 358
Sfr274I CTCGAG 1 cut(s) 209
SgrDI CGTCGACG 1 cut(s) 122
SinI GGWCC 3 cut(s) 34, 511, 528
SlaI CTCGAG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 2 cut(s) 6, 600
SspDI GGCGCC 3 cut(s) 158, 302, 356
SspMI CTAG 2 cut(s) 65, 366
SstI GAGCTC 1 cut(s) 755
StyD4I CCNGG 3 cut(s) 36, 513, 771
StyI CCWWGG 2 cut(s) 365, 477
TaaI ACNGT 2 cut(s) 619, 734
TaiI ACGT 1 cut(s) 384
TaqI TCGA 8 cut(s) 123, 186, 192, 210, 384, 402, 429, 707
TaqII GACCGA 1 cut(s) 82
TasI AATT 2 cut(s) 6, 600
TauI GCSGC 3 cut(s) 314, 702, 809
TfiI GAWTC 1 cut(s) 691
TscAI CASTG 1 cut(s) 624
TseFI GTSAC 2 cut(s) 587, 670
TseI GCWGC 2 cut(s) 421, 745
Tsp45I GTSAC 2 cut(s) 587, 670
TspGWI ACGGA 1 cut(s) 274
TspRI CASTG 1 cut(s) 624
Van91I CCANNNNNTGG 1 cut(s) 694
VpaK11BI GGWCC 3 cut(s) 34, 511, 528
XagI CCTNNNNNAGG 1 cut(s) 364
XapI RAATTY 1 cut(s) 600
XceI RCATGY 1 cut(s) 544
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XhoI CTCGAG 1 cut(s) 209
XmaJI CCTAGG 1 cut(s) 365
XmiI GTMKAC 2 cut(s) 123, 384
XspI CTAG 2 cut(s) 65, 366
ZraI GACGTC 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.