Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013318

Physical Location & Seq

Genomic Coordinates Reverse (-)

9895798 .. 9898720

Gene Structure 2923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGGAATTGTAGAGGAAGCTCACAACGTACGGGTTCTCGGGTCGGGTCAGCGGATCATAGTCCTCGCCCACGGGTTCGGAACCGACCAGTCAGTCTGGAAGCACCTTGTCCCCCACCTTGTCGACGACTACAAGGTTCTCATGTACGACAACATGGGCGCCGGAACGACCAACCCCGACTACTTCGACTTCGACCGCTACTCCACGCTCGAGGGCTACGCGTACGACTTACTCGCCATCCTCGAGGAGTTTCAGGTCGAGAGTTGCATCTTTGTGGGCCACTCTGTTTCCGGCATGATTGGCGCCATCGCAGCCGTCATGAGGCCGGACCTTTTCACCAAGCTTGTTATGATCGCCGCCTCGCCAAGGTATCTGAACGACTCGGACTACTACGGGGGGTTCGAGCAAGAAGACCTAGAGCAACTCTTCGAAGCCATCCGCTCAAACTACAAGGCTTGGTGTTCCGGCTTCGCACCGCTTGCCGTGGGCGGCGACATGGACTCGGTAGCCGTCCAGGAGTTCAGCCGGACCCTATTCAACATGAGGCCAGACATAGCCCTCAGCGTGGCTCAGACCATTTTCCAAAGCGACATGAGGCAGGTCATCGGCATGGTCACGGTGCCGTGCCACATATTGCAAAGTGTTAAGGACTTGGCGGTGCCTGTGGTGGTGACGGAGTATCTACACCAGAATTTGGGGGGTGAGTCGATCGTGGAGGTGATGTCGTCAGACGGGCATCTTCCCCAGCTGAGCTCGCCGGATATTGTGATCCCGGTGCTGCTCCGCCACATTAGGCATGATATTGCGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009791 GO:0032501 GO:0032502 GO:0036377 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0048856 GO:0050896 GO:0051704 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

271

Amino Acids

29.93

Weight (kDa)

4.72

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	17 - 232	1.5e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	19 - 252	5.8e-17	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	20 - 257	9.6e-15	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37470
fragaria_vesca	FvH4_1g17110
malus_domestica	MD02G1181300.v1.1 MD02G1181500.v1.1
prunus_persica	Prupe.6G225000_v2.0.a1
pyrus_communis	pycom02g14720 pycom02g14730
rosa_chinensis	RchiOBHm_Chr2g0107281
rosa_laevigata	RLG00000017567
rosa_multiflora	Rmu_co8389809.1_g000001 Rmu_sc0006416.1_g000017
rosa_roxburghii	Rroxscaffold_2G00136470
rosa_rugosa	Rorug02G0141400
rosa_samantha	Rh2AG192400 Rh2BG204300 Rh2CG197600 Rh2DG199600
rosa_wichuraiana	Rw2G015220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AbsI	CCTCGAGG	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	589
AccB1I	GGYRCC	4 cut(s)	158, 302, 619, 658
AccB7I	CCANNNNNTGG	1 cut(s)	694
AccBSI	CCGCTC	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	1 cut(s)	221
AciI	CCGC	9 cut(s)	52, 196, 357, 439, 476, 489, 656, 784, 806
AclWI	GGATC	2 cut(s)	62, 763
AcsI	RAATTY	1 cut(s)	691
AcyI	GRCGYC	2 cut(s)	159, 303
AfaI	GTAC	3 cut(s)	30, 146, 224
AfiI	CCNNNNNNNGG	4 cut(s)	321, 366, 565, 694
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	1 cut(s)	538
AjnI	CCWGG	1 cut(s)	513
AluBI	AGCT	4 cut(s)	20, 343, 748, 753
AluI	AGCT	4 cut(s)	20, 343, 748, 753
Alw21I	GWGCWC	1 cut(s)	755
AlwI	GGATC	2 cut(s)	62, 763
Ama87I	CYCGRG	3 cut(s)	38, 209, 242
AoxI	GGCC	3 cut(s)	277, 323, 545
ApeKI	GCWGC	2 cut(s)	311, 778
ApoI	RAATTY	1 cut(s)	691
AspLEI	GCGC	2 cut(s)	161, 305
AspS9I	GGNCC	3 cut(s)	277, 328, 528
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	4 cut(s)	328, 682, 713, 730
AsuII	TTCGAA	1 cut(s)	429
AvaI	CYCGRG	3 cut(s)	38, 209, 242
AvaII	GGWCC	2 cut(s)	328, 528
BanI	GGYRCC	4 cut(s)	158, 302, 619, 658
BanII	GRGCYC	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	755
BbvCI	CCTCAGC	1 cut(s)	560
BbvI	GCAGC	2 cut(s)	323, 765
BccI	CCATC	3 cut(s)	245, 314, 443
BceAI	ACGGC	4 cut(s)	299, 467, 494, 607
BciT130I	CCWGG	1 cut(s)	515
BcnI	CCSGG	1 cut(s)	773
BfaI	CTAG	1 cut(s)	416
BfoI	RGCGCY	2 cut(s)	162, 306
BfuAI	ACCTGC	1 cut(s)	589
BisI	GCNGC	4 cut(s)	312, 357, 490, 779
BlpI	GCTNAGC	1 cut(s)	749
BlsI	GCNGC	4 cut(s)	313, 358, 491, 780
Bme1390I	CCNGG	2 cut(s)	515, 773
Bme18I	GGWCC	2 cut(s)	328, 528
BmeT110I	CYCGRG	3 cut(s)	38, 209, 242
BmgT120I	GGNCC	3 cut(s)	277, 328, 528
BmiI	GGNNCC	6 cut(s)	82, 160, 304, 530, 621, 660
BmrFI	CCNGG	2 cut(s)	515, 773
BmsI	GCATC	2 cut(s)	276, 745
BpiI	GAAGAC	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	560
Bpu1102I	GCTNAGC	1 cut(s)	749
Bpu14I	TTCGAA	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	773
BsaHI	GRCGYC	2 cut(s)	159, 303
BsaJI	CCNNGG	3 cut(s)	70, 365, 483
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 707, 737
Bsc4I	CCNNNNNNNGG	4 cut(s)	321, 366, 565, 694
Bse1I	ACTGG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	3 cut(s)	70, 365, 483
BseGI	GGATG	2 cut(s)	237, 435
BseLI	CCNNNNNNNGG	4 cut(s)	321, 366, 565, 694
BseMII	CTCAG	3 cut(s)	574, 584, 740
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	323, 765
BseYI	CCCAGC	1 cut(s)	744
Bsh1236I	CGCG	1 cut(s)	221
Bsh1285I	CGRYCG	2 cut(s)	196, 711
BshFI	GGCC	3 cut(s)	279, 325, 547
BshNI	GGYRCC	4 cut(s)	158, 302, 619, 658
BsiEI	CGRYCG	2 cut(s)	196, 711
BsiHKAI	GWGCWC	1 cut(s)	755
BsiHKCI	CYCGRG	3 cut(s)	38, 209, 242
BsiSI	CCGG	7 cut(s)	162, 291, 326, 465, 526, 758, 773
BsiWI	CGTACG	2 cut(s)	28, 222
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	4 cut(s)	321, 366, 565, 694
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	3 cut(s)	279, 325, 547
BsoBI	CYCGRG	3 cut(s)	38, 209, 242
Bsp119I	TTCGAA	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	755
Bsp143I	GATC	4 cut(s)	54, 351, 708, 768
Bsp1720I	GCTNAGC	1 cut(s)	749
BspACI	CCGC	9 cut(s)	52, 196, 357, 439, 476, 489, 656, 784, 806
BspANI	GGCC	3 cut(s)	279, 325, 547
BspCNI	CTCAG	3 cut(s)	573, 583, 741
BspFNI	CGCG	1 cut(s)	221
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	6 cut(s)	82, 160, 304, 530, 621, 660
BspMI	ACCTGC	1 cut(s)	589
BspPI	GGATC	2 cut(s)	62, 763
BspT104I	TTCGAA	1 cut(s)	429
BspT107I	GGYRCC	4 cut(s)	158, 302, 619, 658
BsrBI	CCGCTC	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	3 cut(s)	70, 365, 483
BssMI	GATC	4 cut(s)	54, 351, 708, 768
BssNI	GRCGYC	2 cut(s)	159, 303
BssT1I	CCWWGG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	1 cut(s)	619
Bst6I	CTCTTC	1 cut(s)	431
BstACI	GRCGYC	2 cut(s)	159, 303
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	480, 755
BstDEI	CTNAG	3 cut(s)	560, 570, 749
BstDSI	CCRYGG	2 cut(s)	70, 483
BstENI	CCTNNNNNAGG	1 cut(s)	364
BstF5I	GGATG	2 cut(s)	237, 435
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	2 cut(s)	162, 306
BstHHI	GCGC	2 cut(s)	161, 305
BstKTI	GATC	4 cut(s)	57, 354, 711, 771
BstMBI	GATC	4 cut(s)	54, 351, 708, 768
BstMCI	CGRYCG	2 cut(s)	196, 711
BstMWI	GCNNNNNNNGC	4 cut(s)	300, 311, 479, 754
BstNI	CCWGG	1 cut(s)	515
BstSCI	CCNGG	2 cut(s)	513, 771
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	323, 765
BstV2I	GAAGAC	1 cut(s)	417
BsuRI	GGCC	3 cut(s)	279, 325, 547
BtgI	CCRYGG	2 cut(s)	70, 483
BtgZI	GCGATG	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	237, 435
BveI	ACCTGC	1 cut(s)	589
Cac8I	GCNNGC	2 cut(s)	480, 755
CciI	TCATGA	1 cut(s)	318
CfoI	GCGC	2 cut(s)	161, 305
Cfr13I	GGNCC	3 cut(s)	277, 328, 528
Csp6I	GTAC	3 cut(s)	29, 145, 223
CviAII	CATG	9 cut(s)	142, 154, 295, 319, 496, 541, 592, 610, 797
CviQI	GTAC	3 cut(s)	29, 145, 223
DdeI	CTNAG	3 cut(s)	560, 570, 749
DinI	GGCGCC	2 cut(s)	160, 304
DpnI	GATC	4 cut(s)	56, 353, 710, 770
DpnII	GATC	4 cut(s)	54, 351, 708, 768
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
EciI	GGCGGA	1 cut(s)	773
Ecl136II	GAGCTC	1 cut(s)	753
Eco130I	CCWWGG	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	755
Eco47I	GGWCC	2 cut(s)	328, 528
Eco53kI	GAGCTC	1 cut(s)	753
Eco88I	CYCGRG	3 cut(s)	38, 209, 242
EcoICRI	GAGCTC	1 cut(s)	753
EcoNI	CCTNNNNNAGG	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	365
EcoT38I	GRGCYC	1 cut(s)	755
EgeI	GGCGCC	2 cut(s)	160, 304
EheI	GGCGCC	2 cut(s)	160, 304
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	9 cut(s)	145, 157, 298, 322, 499, 544, 595, 613, 800
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	9 cut(s)	141, 153, 294, 318, 495, 540, 591, 609, 796
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	4 cut(s)	312, 357, 490, 779
FokI	GGATG	2 cut(s)	224, 422
FriOI	GRGCYC	1 cut(s)	755
Fsp4HI	GCNGC	4 cut(s)	312, 357, 490, 779
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	2 cut(s)	160, 304
GluI	GCNGC	4 cut(s)	312, 357, 490, 779
GsaI	CCCAGC	1 cut(s)	748
HaeII	RGCGCY	2 cut(s)	162, 306
HaeIII	GGCC	3 cut(s)	279, 325, 547
HapII	CCGG	7 cut(s)	162, 291, 326, 465, 526, 758, 773
HhaI	GCGC	2 cut(s)	161, 305
Hin1I	GRCGYC	2 cut(s)	159, 303
Hin1II	CATG	9 cut(s)	145, 157, 298, 322, 499, 544, 595, 613, 800
Hin6I	GCGC	2 cut(s)	159, 303
HinP1I	GCGC	2 cut(s)	159, 303
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	3 cut(s)	380, 500, 704
HpaII	CCGG	7 cut(s)	162, 291, 326, 465, 526, 758, 773
HphI	GGTGA	4 cut(s)	328, 682, 713, 730
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	5 cut(s)	80, 375, 385, 573, 730
Hpy188III	TCNNGA	3 cut(s)	97, 259, 319
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	267, 637
HpyF10VI	GCNNNNNNNGC	4 cut(s)	300, 311, 479, 754
HpyF3I	CTNAG	3 cut(s)	560, 570, 749
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	2 cut(s)	159, 303
Hsp92II	CATG	9 cut(s)	145, 157, 298, 322, 499, 544, 595, 613, 800
HspAI	GCGC	2 cut(s)	159, 303
KasI	GGCGCC	2 cut(s)	158, 302
Kzo9I	GATC	4 cut(s)	54, 351, 708, 768
LmnI	GCTCC	1 cut(s)	786
Lsp1109I	GCAGC	2 cut(s)	323, 765
LweI	GCATC	2 cut(s)	276, 745
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	613, 670
MalI	GATC	4 cut(s)	56, 353, 710, 770
MbiI	CCGCTC	1 cut(s)	441
MboI	GATC	4 cut(s)	54, 351, 708, 768
MboII	GAAGA	3 cut(s)	418, 422, 731
MhlI	GDGCHC	1 cut(s)	755
MluCI	AATT	2 cut(s)	6, 691
MluI	ACGCGT	1 cut(s)	219
Mly113I	GGCGCC	2 cut(s)	159, 303
MlyI	GAGTC	3 cut(s)	374, 494, 713
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	2 cut(s)	272, 608
MspA1I	CMGCKG	2 cut(s)	52, 748
MspI	CCGG	7 cut(s)	162, 291, 326, 465, 526, 758, 773
MspR9I	CCNGG	2 cut(s)	515, 773
MvaI	CCWGG	1 cut(s)	515
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	4 cut(s)	300, 311, 479, 754
NarI	GGCGCC	2 cut(s)	159, 303
NciI	CCSGG	1 cut(s)	773
NdeII	GATC	4 cut(s)	54, 351, 708, 768
NlaIII	CATG	9 cut(s)	145, 157, 298, 322, 499, 544, 595, 613, 800
NlaIV	GGNNCC	6 cut(s)	82, 160, 304, 530, 621, 660
NmuCI	GTSAC	2 cut(s)	613, 670
NspV	TTCGAA	1 cut(s)	429
PaeR7I	CTCGAG	2 cut(s)	209, 242
PagI	TCATGA	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 399
Pfl23II	CGTACG	2 cut(s)	28, 222
PflMI	CCANNNNNTGG	1 cut(s)	694
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	4 cut(s)	313, 358, 491, 780
Ple19I	CGATCG	1 cut(s)	711
PleI	GAGTC	3 cut(s)	374, 494, 712
PluTI	GGCGCC	2 cut(s)	162, 306
PpsI	GAGTC	3 cut(s)	374, 494, 712
Psp124BI	GAGCTC	1 cut(s)	755
Psp6I	CCWGG	1 cut(s)	513
PspFI	CCCAGC	1 cut(s)	744
PspGI	CCWGG	1 cut(s)	513
PspLI	CGTACG	2 cut(s)	28, 222
PspN4I	GGNNCC	6 cut(s)	82, 160, 304, 530, 621, 660
PspPI	GGNCC	3 cut(s)	277, 328, 528
PspXI	VCTCGAGB	2 cut(s)	209, 242
PvuI	CGATCG	1 cut(s)	711
PvuII	CAGCTG	1 cut(s)	748
RsaI	GTAC	3 cut(s)	30, 146, 224
RsaNI	GTAC	3 cut(s)	29, 145, 223
RseI	CAYNNNNRTG	2 cut(s)	272, 608
SacI	GAGCTC	1 cut(s)	755
SalI	GTCGAC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	4 cut(s)	312, 357, 490, 779
Sau3AI	GATC	4 cut(s)	54, 351, 708, 768
Sau96I	GGNCC	3 cut(s)	277, 328, 528
SchI	GAGTC	3 cut(s)	374, 494, 713
ScrFI	CCNGG	2 cut(s)	515, 773
SduI	GDGCHC	1 cut(s)	755
SfaNI	GCATC	2 cut(s)	276, 745
SfoI	GGCGCC	2 cut(s)	160, 304
Sfr274I	CTCGAG	2 cut(s)	209, 242
SfuI	TTCGAA	1 cut(s)	429
SinI	GGWCC	2 cut(s)	328, 528
SlaI	CTCGAG	2 cut(s)	209, 242
SmiMI	CAYNNNNRTG	2 cut(s)	272, 608
SmlI	CTYRAG	2 cut(s)	209, 242
SmoI	CTYRAG	2 cut(s)	209, 242
Sse9I	AATT	2 cut(s)	6, 691
SsiI	CCGC	9 cut(s)	52, 196, 357, 439, 476, 489, 656, 784, 806
SspDI	GGCGCC	2 cut(s)	158, 302
SspMI	CTAG	1 cut(s)	416
SstI	GAGCTC	1 cut(s)	755
StyD4I	CCNGG	2 cut(s)	513, 771
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	619
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	9 cut(s)	123, 186, 192, 210, 243, 258, 402, 429, 707
TasI	AATT	2 cut(s)	6, 691
TauI	GCSGC	2 cut(s)	359, 492
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TseFI	GTSAC	2 cut(s)	613, 670
TseI	GCWGC	2 cut(s)	311, 778
Tsp45I	GTSAC	2 cut(s)	613, 670
TspGWI	ACGGA	1 cut(s)	689
Van91I	CCANNNNNTGG	1 cut(s)	694
VpaK11BI	GGWCC	2 cut(s)	328, 528
XagI	CCTNNNNNAGG	1 cut(s)	364
XapI	RAATTY	1 cut(s)	691
XhoI	CTCGAG	2 cut(s)	209, 242
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.