Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0013318

Physical Location & Seq

Genomic Coordinates Reverse (-)

11327800 .. 11330663

Gene Structure 2864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGGAATAGTGGAAGAAGCTCACAACGTGCGGGTCGTAGGGTCGGGTCAGCAAGTCCTAGTCCTGGCCCACGGCTTCGGCACCGATCAGTCGGTCTGGAAACACCTCGTCCCCCACCTCGTCGACGACTACCGCGTCATTTTGTACGACAACATGGGCGCCGGAACCACTAACCCTGAATACTTCGACTTCGAGCGCTACTCCACCATCGAAGGCTACGCCTACGACCTCCTCGCCATTCTCGAGGAGCTCCACGTCCAGTCATGCATCTTCGTCGGCCACTCCATCTCCGCCATGATCGGCGCCATCGCCGCTGTCACCCGTCCCGACCTCTTCACCAAGCTCATCATGATCGCCGCCTCTCCCAGGTTTCTCAACGACGTGGACTACTACGGAGGATTCGAGCAAGAAGATGTGGGGCAACTATTCGAGGCGATCCAGTCCAACTACAAGGCATGGTGCTCCGGGTTCGCATCGCTGGTGGTGGGCGGCGACATGGACTCAGTGGCGATCCAGGAGTTTAGCCGGACCCTATTCAATATGCGACCGGACATTTCCCTCAGCGTGGCACAAACCATATTCCAAAGCGACATTAGACAAATACTTAGGTTAATCACGGTGCCATGCCACATTTTACAGAGTGTAAAAGACCTTGCTGTCCCCATGGTTGTGACCGAGTATTTGCACCAGAATCTCGGTGGCAAGTCGATCGTTGAGGTCATGTCTTCAGACGGTTATCTCCCACAGTTGAGCTCGCCGGATATCGTGAATCCAGTGCTGCTCAAGCACATTAGATATGATATCGCGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009791 GO:0032501 GO:0032502 GO:0036377 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0048856 GO:0050896 GO:0051704 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

271

Amino Acids

29.95

Weight (kDa)

4.82

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	17 - 234	1.1e-08	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	19 - 155	6.7e-15	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	20 - 256	9.2e-13	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37470
fragaria_vesca	FvH4_1g17110
malus_domestica	MD02G1181300.v1.1 MD02G1181500.v1.1
prunus_persica	Prupe.6G225000_v2.0.a1
pyrus_communis	pycom02g14720 pycom02g14730
rosa_chinensis	RchiOBHm_Chr2g0107281
rosa_laevigata	RLG00000017567
rosa_multiflora	Rmu_co8389809.1_g000001 Rmu_sc0006416.1_g000017
rosa_roxburghii	Rroxscaffold_2G00136470
rosa_rugosa	Rorug02G0141400
rosa_samantha	Rh2AG192400 Rh2BG204300 Rh2CG197600 Rh2DG199600
rosa_wichuraiana	Rw2G015220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	134, 656
AccB1I	GGYRCC	4 cut(s)	80, 158, 302, 619
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	2 cut(s)	135, 806
AciI	CCGC	7 cut(s)	31, 133, 291, 312, 357, 489, 806
AclWI	GGATC	2 cut(s)	430, 505
AcoI	YGGCCR	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	711
AcyI	GRCGYC	2 cut(s)	159, 303
AdeI	CACNNNGTG	1 cut(s)	28
AfaI	GTAC	1 cut(s)	146
AfeI	AGCGCT	1 cut(s)	197
AfiI	CCNNNNNNNGG	3 cut(s)	64, 366, 565
AgsI	TTSAA	1 cut(s)	538
AjiI	CACGTC	2 cut(s)	256, 382
AjnI	CCWGG	3 cut(s)	63, 365, 513
AluBI	AGCT	4 cut(s)	20, 250, 343, 753
AluI	AGCT	4 cut(s)	20, 250, 343, 753
Alw21I	GWGCWC	3 cut(s)	252, 464, 755
AlwI	GGATC	2 cut(s)	430, 505
Ama87I	CYCGRG	1 cut(s)	242
Aor51HI	AGCGCT	1 cut(s)	197
AoxI	GGCC	2 cut(s)	66, 277
ApeKI	GCWGC	1 cut(s)	778
ArsI	GACNNNNNNTTYG	2 cut(s)	664, 696
AspLEI	GCGC	3 cut(s)	161, 198, 305
AspS9I	GGNCC	2 cut(s)	67, 528
AsuC2I	CCSGG	1 cut(s)	466
AsuHPI	GGTGA	2 cut(s)	310, 328
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	528
BanI	GGYRCC	4 cut(s)	80, 158, 302, 619
BanII	GRGCYC	2 cut(s)	252, 755
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	3 cut(s)	252, 464, 755
BbvCI	CCTCAGC	1 cut(s)	560
BbvI	GCAGC	1 cut(s)	765
BccI	CCATC	3 cut(s)	215, 293, 314
BceAI	ACGGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	4 cut(s)	256, 290, 691, 725
BciT130I	CCWGG	3 cut(s)	65, 367, 515
BcnI	CCSGG	1 cut(s)	466
BfaI	CTAG	1 cut(s)	59
BfoI	RGCGCY	3 cut(s)	162, 199, 306
BisI	GCNGC	5 cut(s)	312, 357, 490, 779, 807
BlsI	GCNGC	5 cut(s)	313, 358, 491, 780, 808
Bme1390I	CCNGG	4 cut(s)	65, 367, 466, 515
Bme18I	GGWCC	1 cut(s)	528
BmeT110I	CYCGRG	1 cut(s)	242
BmgBI	CACGTC	2 cut(s)	256, 382
BmgT120I	GGNCC	2 cut(s)	67, 528
BmiI	GGNNCC	6 cut(s)	82, 160, 166, 304, 530, 621
BmrFI	CCNGG	4 cut(s)	65, 367, 466, 515
BmsI	GCATC	2 cut(s)	276, 482
BpiI	GAAGAC	1 cut(s)	717
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
Bpu10I	CCTNAGC	1 cut(s)	560
BpuEI	CTTGAG	1 cut(s)	767
BpuMI	CCSGG	1 cut(s)	466
BsaHI	GRCGYC	2 cut(s)	159, 303
BsaJI	CCNNGG	3 cut(s)	70, 365, 663
BsaWI	WCCGGW	1 cut(s)	547
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 366, 565
Bse1I	ACTGG	3 cut(s)	259, 439, 773
BseBI	CCWGG	3 cut(s)	65, 367, 515
BseDI	CCNNGG	3 cut(s)	70, 365, 663
BseLI	CCNNNNNNNGG	3 cut(s)	64, 366, 565
BseMII	CTCAG	2 cut(s)	516, 574
BseNI	ACTGG	3 cut(s)	259, 439, 773
BseRI	GAGGAG	2 cut(s)	221, 260
BseXI	GCAGC	1 cut(s)	765
Bsh1236I	CGCG	2 cut(s)	135, 806
Bsh1285I	CGRYCG	2 cut(s)	548, 711
BshFI	GGCC	2 cut(s)	68, 279
BshNI	GGYRCC	4 cut(s)	80, 158, 302, 619
BsiEI	CGRYCG	2 cut(s)	548, 711
BsiHKAI	GWGCWC	3 cut(s)	252, 464, 755
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	5 cut(s)	162, 465, 526, 548, 758
BslFI	GGGAC	3 cut(s)	95, 309, 644
BslI	CCNNNNNNNGG	3 cut(s)	64, 366, 565
BsmFI	GGGAC	3 cut(s)	95, 309, 644
BsnI	GGCC	2 cut(s)	68, 279
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	3 cut(s)	252, 464, 755
Bsp143I	GATC	6 cut(s)	85, 297, 351, 435, 510, 708
Bsp19I	CCATGG	1 cut(s)	663
BspACI	CCGC	7 cut(s)	31, 133, 291, 312, 357, 489, 806
BspANI	GGCC	2 cut(s)	68, 279
BspCNI	CTCAG	2 cut(s)	515, 573
BspFNI	CGCG	2 cut(s)	135, 806
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	6 cut(s)	82, 160, 166, 304, 530, 621
BspPI	GGATC	2 cut(s)	430, 505
BspT107I	GGYRCC	4 cut(s)	80, 158, 302, 619
BsrI	ACTGG	3 cut(s)	259, 439, 773
BssECI	CCNNGG	3 cut(s)	70, 365, 663
BssMI	GATC	6 cut(s)	85, 297, 351, 435, 510, 708
BssNI	GRCGYC	2 cut(s)	159, 303
BssT1I	CCWWGG	1 cut(s)	663
Bst2UI	CCWGG	3 cut(s)	65, 367, 515
Bst4CI	ACNGT	3 cut(s)	619, 734, 747
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	2 cut(s)	159, 303
BstC8I	GCNNGC	1 cut(s)	755
BstDEI	CTNAG	3 cut(s)	502, 560, 605
BstDSI	CCRYGG	2 cut(s)	70, 663
BstENI	CCTNNNNNAGG	1 cut(s)	364
BstFNI	CGCG	2 cut(s)	135, 806
BstH2I	RGCGCY	3 cut(s)	162, 199, 306
BstHHI	GCGC	3 cut(s)	161, 198, 305
BstKTI	GATC	6 cut(s)	88, 300, 354, 438, 513, 711
BstMBI	GATC	6 cut(s)	85, 297, 351, 435, 510, 708
BstMCI	CGRYCG	2 cut(s)	548, 711
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 784
BstNI	CCWGG	3 cut(s)	65, 367, 515
BstSCI	CCNGG	4 cut(s)	63, 365, 464, 513
BstUI	CGCG	2 cut(s)	135, 806
BstV1I	GCAGC	1 cut(s)	765
BstV2I	GAAGAC	1 cut(s)	717
BsuRI	GGCC	2 cut(s)	68, 279
BtgI	CCRYGG	2 cut(s)	70, 663
BtgZI	GCGATG	2 cut(s)	292, 459
BtrI	CACGTC	2 cut(s)	256, 382
BtsIMutI	CAGTG	2 cut(s)	510, 780
Cac8I	GCNNGC	1 cut(s)	755
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	3 cut(s)	161, 198, 305
Cfr13I	GGNCC	2 cut(s)	67, 528
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	9 cut(s)	154, 264, 295, 349, 456, 496, 624, 664, 721
CviJI	RGCY	9 cut(s)	20, 68, 75, 216, 250, 279, 343, 525, 753
CviKI_1	RGCY	9 cut(s)	20, 68, 75, 216, 250, 279, 343, 525, 753
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	3 cut(s)	502, 560, 605
DinI	GGCGCC	2 cut(s)	160, 304
DpnI	GATC	6 cut(s)	87, 299, 353, 437, 512, 710
DpnII	GATC	6 cut(s)	85, 297, 351, 435, 510, 708
DraIII	CACNNNGTG	1 cut(s)	28
DrdI	GACNNNNNNGTC	2 cut(s)	134, 656
DseDI	GACNNNNNNGTC	2 cut(s)	134, 656
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EciI	GGCGGA	1 cut(s)	280
Ecl136II	GAGCTC	2 cut(s)	250, 753
Eco130I	CCWWGG	1 cut(s)	663
Eco24I	GRGCYC	2 cut(s)	252, 755
Eco32I	GATATC	2 cut(s)	763, 802
Eco47I	GGWCC	1 cut(s)	528
Eco47III	AGCGCT	1 cut(s)	197
Eco53kI	GAGCTC	2 cut(s)	250, 753
Eco57I	CTGAAG	1 cut(s)	711
Eco88I	CYCGRG	1 cut(s)	242
EcoICRI	GAGCTC	2 cut(s)	250, 753
EcoNI	CCTNNNNNAGG	1 cut(s)	364
EcoRII	CCWGG	3 cut(s)	63, 365, 513
EcoRV	GATATC	2 cut(s)	763, 802
EcoT14I	CCWWGG	1 cut(s)	663
EcoT22I	ATGCAT	1 cut(s)	269
EcoT38I	GRGCYC	2 cut(s)	252, 755
EgeI	GGCGCC	2 cut(s)	160, 304
EheI	GGCGCC	2 cut(s)	160, 304
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	9 cut(s)	157, 267, 298, 352, 459, 499, 627, 667, 724
FaqI	GGGAC	3 cut(s)	95, 309, 644
FatI	CATG	9 cut(s)	153, 263, 294, 348, 455, 495, 623, 663, 720
FauI	CCCGC	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	5 cut(s)	312, 357, 490, 779, 807
FriOI	GRGCYC	2 cut(s)	252, 755
Fsp4HI	GCNGC	5 cut(s)	312, 357, 490, 779, 807
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	3 cut(s)	160, 197, 304
GluI	GCNGC	5 cut(s)	312, 357, 490, 779, 807
HaeII	RGCGCY	3 cut(s)	162, 199, 306
HaeIII	GGCC	2 cut(s)	68, 279
HapII	CCGG	5 cut(s)	162, 465, 526, 548, 758
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	3 cut(s)	161, 198, 305
Hin1I	GRCGYC	2 cut(s)	159, 303
Hin1II	CATG	9 cut(s)	157, 267, 298, 352, 459, 499, 627, 667, 724
Hin6I	GCGC	3 cut(s)	159, 196, 303
HinP1I	GCGC	3 cut(s)	159, 196, 303
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	4 cut(s)	399, 500, 691, 769
HpaII	CCGG	5 cut(s)	162, 465, 526, 548, 758
HphI	GGTGA	2 cut(s)	310, 328
Hpy166II	GTNNAC	2 cut(s)	124, 385
Hpy188I	TCNGA	1 cut(s)	730
Hpy188III	TCNNGA	5 cut(s)	97, 242, 326, 349, 766
Hpy8I	GTNNAC	2 cut(s)	124, 385
Hpy99I	CGWCG	4 cut(s)	125, 128, 278, 383
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	3 cut(s)	619, 734, 747
HpyCH4IV	ACGT	3 cut(s)	27, 255, 381
HpyCH4V	TGCA	2 cut(s)	267, 685
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 784
HpyF3I	CTNAG	3 cut(s)	502, 560, 605
HpySE526I	ACGT	3 cut(s)	27, 255, 381
Hsp92I	GRCGYC	2 cut(s)	159, 303
Hsp92II	CATG	9 cut(s)	157, 267, 298, 352, 459, 499, 627, 667, 724
HspAI	GCGC	3 cut(s)	159, 196, 303
KasI	GGCGCC	2 cut(s)	158, 302
Kzo9I	GATC	6 cut(s)	85, 297, 351, 435, 510, 708
LmnI	GCTCC	3 cut(s)	247, 255, 467
Lsp1109I	GCAGC	1 cut(s)	765
LweI	GCATC	2 cut(s)	276, 482
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	3 cut(s)	27, 255, 381
MaeIII	GTNAC	2 cut(s)	316, 670
MalI	GATC	6 cut(s)	87, 299, 353, 437, 512, 710
MboI	GATC	6 cut(s)	85, 297, 351, 435, 510, 708
MboII	GAAGA	5 cut(s)	26, 262, 325, 422, 717
MhlI	GDGCHC	3 cut(s)	252, 464, 755
Mly113I	GGCGCC	2 cut(s)	159, 303
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	468
Mph1103I	ATGCAT	1 cut(s)	269
MseI	TTAA	1 cut(s)	611
MslI	CAYNNNNRTG	1 cut(s)	668
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	5 cut(s)	162, 465, 526, 548, 758
MspR9I	CCNGG	4 cut(s)	65, 367, 466, 515
MvaI	CCWGG	3 cut(s)	65, 367, 515
MvnI	CGCG	2 cut(s)	135, 806
MwoI	GCNNNNNNNGC	2 cut(s)	311, 784
NarI	GGCGCC	2 cut(s)	159, 303
NciI	CCSGG	1 cut(s)	466
NcoI	CCATGG	1 cut(s)	663
NdeII	GATC	6 cut(s)	85, 297, 351, 435, 510, 708
NlaIII	CATG	9 cut(s)	157, 267, 298, 352, 459, 499, 627, 667, 724
NlaIV	GGNNCC	6 cut(s)	82, 160, 166, 304, 530, 621
NmuCI	GTSAC	2 cut(s)	316, 670
NsiI	ATGCAT	1 cut(s)	269
PaeR7I	CTCGAG	1 cut(s)	242
PagI	TCATGA	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	4 cut(s)	33, 132, 240, 399
PfeI	GAWTC	3 cut(s)	399, 691, 769
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	5 cut(s)	313, 358, 491, 780, 808
Ple19I	CGATCG	1 cut(s)	711
PleI	GAGTC	1 cut(s)	494
PluTI	GGCGCC	2 cut(s)	162, 306
PpsI	GAGTC	1 cut(s)	494
Psp124BI	GAGCTC	2 cut(s)	252, 755
Psp6I	CCWGG	3 cut(s)	63, 365, 513
PspGI	CCWGG	3 cut(s)	63, 365, 513
PspN4I	GGNNCC	6 cut(s)	82, 160, 166, 304, 530, 621
PspPI	GGNCC	2 cut(s)	67, 528
PvuI	CGATCG	1 cut(s)	711
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	668
SacI	GAGCTC	2 cut(s)	252, 755
SalI	GTCGAC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	611
SatI	GCNGC	5 cut(s)	312, 357, 490, 779, 807
Sau3AI	GATC	6 cut(s)	85, 297, 351, 435, 510, 708
Sau96I	GGNCC	2 cut(s)	67, 528
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	4 cut(s)	65, 367, 466, 515
SduI	GDGCHC	3 cut(s)	252, 464, 755
SfaNI	GCATC	2 cut(s)	276, 482
SfoI	GGCGCC	2 cut(s)	160, 304
Sfr274I	CTCGAG	1 cut(s)	242
SgrDI	CGTCGACG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	528
SlaI	CTCGAG	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	668
SmlI	CTYRAG	2 cut(s)	242, 782
SmoI	CTYRAG	2 cut(s)	242, 782
SsiI	CCGC	7 cut(s)	31, 133, 291, 312, 357, 489, 806
SspDI	GGCGCC	2 cut(s)	158, 302
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	2 cut(s)	252, 755
StyD4I	CCNGG	4 cut(s)	63, 365, 464, 513
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	3 cut(s)	619, 734, 747
TaiI	ACGT	3 cut(s)	30, 258, 384
TaqI	TCGA	8 cut(s)	123, 186, 192, 210, 243, 402, 429, 707
TaqII	GACCGA	2 cut(s)	82, 689
TauI	GCSGC	4 cut(s)	314, 359, 492, 809
TfiI	GAWTC	3 cut(s)	399, 691, 769
Tru1I	TTAA	1 cut(s)	611
Tru9I	TTAA	1 cut(s)	611
TscAI	CASTG	2 cut(s)	510, 780
TseFI	GTSAC	2 cut(s)	316, 670
TseI	GCWGC	1 cut(s)	778
Tsp45I	GTSAC	2 cut(s)	316, 670
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	2 cut(s)	510, 780
VpaK11BI	GGWCC	1 cut(s)	528
XagI	CCTNNNNNAGG	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	695
XhoI	CTCGAG	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	1 cut(s)	59
Zsp2I	ATGCAT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.