AT4G37800

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014190
Physical Location & Seq
Reverse (-)
17775370 .. 17777445
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37800.1

Sequence Viewer

Length: 882 bp
ATGGTGGTGTCACTCTTCTCTTCCAGAAATGTTTTCTATACGTTAAGCTTATGCTTATTTGCAGCATTATACCAGCCGGTTATGAGTAGACCGGCTAAGTTTGAAGATGACTTTAGGATCGCATGGTCCGATACTCATATCACTCAAATTGACGGAGGCAGAGCCATTCAGCTCAAATTGGACCCTAGCTCAGGATGTGGATTTGCTTCGAAGAAGCAATACTTGTTCGGCCGTGTGAGCATGAAAATCAAACTGATCCCCGGTGATTCTGCCGGGACTGTCACTGCCTTCTACATGAATTCAGATACCGATTCGGTACGAGACGAGCTTGATTTTGAGTTCTTAGGAAATCGAAGTGGACAACCTTACACAGTGCAAACCAATGTGTTTGCTCATGGTAAAGGCGATAGAGAGCAAAGAGTTAACCTTTGGTTCGACCCTTCTCGTGATTTCCACGAATATGCCATCTCATGGAACCATCTCCGTATTGTCTTCTACGTAGACAATGTGCCCATCAGGGTTTACAAGAACAATGAGGCAAGGAAAGTACCATACCCAAGATTCCAACCAATGGGTGTATATTCCACGTTATGGGAAGCCGATGATTGGGCGACACGTGGAGGAATAGAGAAAATCAATTGGTCGAGAGCGCCATTTTATGCTTATTACAAAGATTTTGATATAGAAGGATGTCCGGTTCCAGGACCCGCAGATTGTCCCGCTAATTCGAAGAATTGGTGGGAAGGCAGTGCGTACCACCAGTTGAGTCCGGTGGAAGCTCGAAGTTATAGATGGGTCCGAGTGAACCATATGGTCTACGATTATTGCACTGACAAATCTCGTTTTCCTGTTCCACCTCCAGAATGCTCGGCTGGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

293

Amino Acids

33.68

Weight (kDa)

7.0

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 35 - 216 4.1e-62 Glycosyl hydrolases family 16
XET_C PF06955 242 - 289 2.5e-20 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37800 AT5G65730
fragaria_vesca FvH4_1g18550
malus_domestica MD02G1192600.v1.1 MD15G1303500.v1.1
prunus_persica Prupe.6G213600_v2.0.a1 Prupe.6G213600_v2.0.a1
pyrus_communis pycom02g15680 pycom15g26640
rosa_chinensis RchiOBHm_Chr2g0109241
rosa_laevigata RLG00000017728
rosa_multiflora Rmu_sc0001807.1_g000003
rosa_roxburghii Rroxscaffold_2G00134370
rosa_rugosa Rorug02G0158800
rosa_samantha Rh2AG210200 Rh2CG212600 Rh2DG216400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 471, 571, 591
AccI GTMKAC 3 cut(s) 88, 501, 816
AciI CCGC 2 cut(s) 708, 720
AclWI GGATC 2 cut(s) 125, 250
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 1 cut(s) 298
AcvI CACGTG 1 cut(s) 617
AfaI GTAC 3 cut(s) 318, 549, 755
AfiI CCNNNNNNNGG 6 cut(s) 191, 471, 571, 591, 606, 701
AflIII ACRYGT 1 cut(s) 614
AgsI TTSAA 1 cut(s) 104
AjnI CCWGG 1 cut(s) 700
AloI GAACNNNNNNTCC 2 cut(s) 681, 713
AluBI AGCT 5 cut(s) 48, 172, 189, 328, 779
AluI AGCT 5 cut(s) 48, 172, 189, 328, 779
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 2 cut(s) 125, 250
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 298
AspLEI GCGC 1 cut(s) 652
AspS9I GGNCC 4 cut(s) 126, 181, 704, 796
AsuC2I CCSGG 2 cut(s) 261, 274
AsuHPI GGTGA 1 cut(s) 275
AsuII TTCGAA 2 cut(s) 209, 728
AvaII GGWCC 4 cut(s) 126, 181, 704, 796
BaeGI GKGCMC 1 cut(s) 513
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
BauI CACGAG 1 cut(s) 444
BbrPI CACGTG 1 cut(s) 617
BbsI GAAGAC 1 cut(s) 484
BbvI GCAGC 1 cut(s) 74
BccI CCATC 4 cut(s) 473, 486, 521, 786
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 1 cut(s) 702
BcnI CCSGG 2 cut(s) 261, 274
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 653
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 3 cut(s) 261, 274, 702
Bme18I GGWCC 4 cut(s) 126, 181, 704, 796
BmgT120I GGNCC 4 cut(s) 126, 181, 704, 796
BmiI GGNNCC 5 cut(s) 183, 476, 699, 706, 797
BmrFI CCNGG 3 cut(s) 261, 274, 702
BpiI GAAGAC 1 cut(s) 484
BpmI CTGGAG 1 cut(s) 843
Bpu10I CCTNAGC 1 cut(s) 190
Bpu14I TTCGAA 2 cut(s) 209, 728
BpuMI CCSGG 2 cut(s) 261, 274
BsaAI YACGTR 2 cut(s) 499, 617
BsaJI CCNNGG 1 cut(s) 259
BsaWI WCCGGW 2 cut(s) 694, 769
Bsc4I CCNNNNNNNGG 6 cut(s) 191, 471, 571, 591, 606, 701
Bse118I RCCGGY 2 cut(s) 76, 91
Bse1I ACTGG 1 cut(s) 760
BseBI CCWGG 1 cut(s) 702
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 2 cut(s) 200, 695
BseLI CCNNNNNNNGG 6 cut(s) 191, 471, 571, 591, 606, 701
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 760
BseSI GKGCMC 1 cut(s) 513
BseX3I CGGCCG 1 cut(s) 229
BseXI GCAGC 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 1 cut(s) 231
BsiEI CGRYCG 1 cut(s) 232
BsiSI CCGG 6 cut(s) 77, 92, 261, 273, 695, 770
BslFI GGGAC 2 cut(s) 289, 702
BslI CCNNNNNNNGG 6 cut(s) 191, 471, 571, 591, 606, 701
BsmAI GTCTC 1 cut(s) 315
BsmBI CGTCTC 1 cut(s) 315
BsmFI GGGAC 2 cut(s) 289, 702
BsmI GAATGC 1 cut(s) 869
BsnI GGCC 1 cut(s) 231
Bsp119I TTCGAA 2 cut(s) 209, 728
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 2 cut(s) 117, 255
BspACI CCGC 2 cut(s) 708, 720
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 1 cut(s) 203
BspLI GGNNCC 5 cut(s) 183, 476, 699, 706, 797
BspPI GGATC 2 cut(s) 125, 250
BspT104I TTCGAA 2 cut(s) 209, 728
BsrFI RCCGGY 2 cut(s) 76, 91
BsrI ACTGG 1 cut(s) 760
BssAI RCCGGY 2 cut(s) 76, 91
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 2 cut(s) 117, 255
BssSI CACGAG 1 cut(s) 444
Bst2BI CACGAG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 2 cut(s) 280, 373
Bst6I CTCTTC 2 cut(s) 20, 25
BstBAI YACGTR 2 cut(s) 499, 617
BstBI TTCGAA 2 cut(s) 209, 728
BstDEI CTNAG 3 cut(s) 96, 190, 343
BstENI CCTNNNNNAGG 1 cut(s) 189
BstF5I GGATG 2 cut(s) 200, 695
BstH2I RGCGCY 1 cut(s) 653
BstHHI GCGC 1 cut(s) 652
BstKTI GATC 2 cut(s) 120, 258
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 2 cut(s) 117, 255
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstNI CCWGG 1 cut(s) 702
BstSCI CCNGG 3 cut(s) 259, 272, 700
BstSLI GKGCMC 1 cut(s) 513
BstSNI TACGTA 1 cut(s) 499
BstV1I GCAGC 1 cut(s) 74
BstV2I GAAGAC 1 cut(s) 484
BstZI CGGCCG 1 cut(s) 229
BsuRI GGCC 1 cut(s) 231
BtsCI GGATG 2 cut(s) 200, 695
BtsI GCAGTG 2 cut(s) 282, 754
BtsIMutI CAGTG 4 cut(s) 282, 378, 754, 828
CfoI GCGC 1 cut(s) 652
Cfr10I RCCGGY 2 cut(s) 76, 91
Cfr13I GGNCC 4 cut(s) 126, 181, 704, 796
Csp6I GTAC 3 cut(s) 317, 548, 754
CviAII CATG 5 cut(s) 123, 241, 295, 395, 471
CviQI GTAC 3 cut(s) 317, 548, 754
DdeI CTNAG 3 cut(s) 96, 190, 343
DpnI GATC 2 cut(s) 119, 257
DpnII GATC 2 cut(s) 117, 255
EaeI YGGCCR 1 cut(s) 229
EagI CGGCCG 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 20, 25
EarI CTCTTC 2 cut(s) 20, 25
EclXI CGGCCG 1 cut(s) 229
Eco105I TACGTA 1 cut(s) 499
Eco47I GGWCC 4 cut(s) 126, 181, 704, 796
Eco52I CGGCCG 1 cut(s) 229
Eco72I CACGTG 1 cut(s) 617
EcoNI CCTNNNNNAGG 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 704
EcoRI GAATTC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 700
Esp3I CGTCTC 1 cut(s) 315
FaeI CATG 5 cut(s) 126, 244, 298, 398, 474
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FaqI GGGAC 2 cut(s) 289, 702
FatI CATG 5 cut(s) 122, 240, 294, 394, 470
FauI CCCGC 2 cut(s) 715, 727
FauNDI CATATG 1 cut(s) 810
FblI GTMKAC 3 cut(s) 88, 501, 816
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 2 cut(s) 207, 702
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 651
GluI GCNGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 843
HaeII RGCGCY 1 cut(s) 653
HaeIII GGCC 1 cut(s) 231
HapII CCGG 6 cut(s) 77, 92, 261, 273, 695, 770
HhaI GCGC 1 cut(s) 652
Hin1II CATG 5 cut(s) 126, 244, 298, 398, 474
Hin6I GCGC 1 cut(s) 650
HinP1I GCGC 1 cut(s) 650
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 5 cut(s) 266, 311, 561, 766, 876
HpaI GTTAAC 1 cut(s) 424
HpaII CCGG 6 cut(s) 77, 92, 261, 273, 695, 770
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 7 cut(s) 89, 359, 424, 502, 523, 805, 817
Hpy188I TCNGA 4 cut(s) 130, 304, 800, 881
Hpy188III TCNNGA 5 cut(s) 24, 192, 446, 645, 860
Hpy8I GTNNAC 7 cut(s) 89, 359, 424, 502, 523, 805, 817
HpyAV CCTTC 4 cut(s) 298, 450, 680, 737
HpyCH4III ACNGT 2 cut(s) 280, 373
HpyCH4IV ACGT 4 cut(s) 41, 498, 587, 616
HpyCH4V TGCA 3 cut(s) 62, 376, 828
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 3 cut(s) 96, 190, 343
HpySE526I ACGT 4 cut(s) 41, 498, 587, 616
Hsp92II CATG 5 cut(s) 126, 244, 298, 398, 474
HspAI GCGC 1 cut(s) 650
KspAI GTTAAC 1 cut(s) 424
Kzo9I GATC 2 cut(s) 117, 255
Lsp1109I GCAGC 1 cut(s) 74
MaeI CTAG 1 cut(s) 186
MaeII ACGT 4 cut(s) 41, 498, 587, 616
MaeIII GTNAC 2 cut(s) 9, 280
MalI GATC 2 cut(s) 119, 257
MboI GATC 2 cut(s) 117, 255
MboII GAAGA 6 cut(s) 7, 12, 116, 223, 484, 742
MfeI CAATTG 1 cut(s) 637
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 6 cut(s) 147, 176, 298, 637, 724, 733
MlyI GAGTC 1 cut(s) 775
MmeI TCCRAC 1 cut(s) 589
MnlI CCTC 4 cut(s) 149, 529, 614, 867
MseI TTAA 2 cut(s) 44, 423
MslI CAYNNNNRTG 1 cut(s) 459
MspI CCGG 6 cut(s) 77, 92, 261, 273, 695, 770
MspR9I CCNGG 3 cut(s) 261, 274, 702
MunI CAATTG 1 cut(s) 637
Mva1269I GAATGC 1 cut(s) 869
MvaI CCWGG 1 cut(s) 702
MwoI GCNNNNNNNGC 1 cut(s) 237
NciI CCSGG 2 cut(s) 261, 274
NdeI CATATG 1 cut(s) 810
NdeII GATC 2 cut(s) 117, 255
NlaIII CATG 5 cut(s) 126, 244, 298, 398, 474
NlaIV GGNNCC 5 cut(s) 183, 476, 699, 706, 797
NmeAIII GCCGAG 1 cut(s) 848
NmuCI GTSAC 2 cut(s) 9, 280
NspV TTCGAA 2 cut(s) 209, 728
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 1 cut(s) 869
PfeI GAWTC 4 cut(s) 266, 311, 561, 876
PflMI CCANNNNNTGG 3 cut(s) 471, 571, 591
PfoI TCCNGGA 1 cut(s) 700
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 774
PmaCI CACGTG 1 cut(s) 617
PmlI CACGTG 1 cut(s) 617
PpsI GAGTC 1 cut(s) 774
Ppu21I YACGTR 2 cut(s) 499, 617
PpuMI RGGWCCY 1 cut(s) 704
Psp5II RGGWCCY 1 cut(s) 704
Psp6I CCWGG 1 cut(s) 700
PspCI CACGTG 1 cut(s) 617
PspGI CCWGG 1 cut(s) 700
PspN4I GGNNCC 5 cut(s) 183, 476, 699, 706, 797
PspPI GGNCC 4 cut(s) 126, 181, 704, 796
PspPPI RGGWCCY 1 cut(s) 704
RsaI GTAC 3 cut(s) 318, 549, 755
RsaNI GTAC 3 cut(s) 317, 548, 754
RseI CAYNNNNRTG 1 cut(s) 459
SaqAI TTAA 2 cut(s) 44, 423
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 117, 255
Sau96I GGNCC 4 cut(s) 126, 181, 704, 796
SchI GAGTC 1 cut(s) 775
ScrFI CCNGG 3 cut(s) 261, 274, 702
SduI GDGCHC 1 cut(s) 513
SfuI TTCGAA 2 cut(s) 209, 728
SinI GGWCC 4 cut(s) 126, 181, 704, 796
SmiMI CAYNNNNRTG 1 cut(s) 459
SnaBI TACGTA 1 cut(s) 499
Sse9I AATT 6 cut(s) 147, 176, 298, 637, 724, 733
SsiI CCGC 2 cut(s) 708, 720
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 3 cut(s) 259, 272, 700
TaaI ACNGT 2 cut(s) 280, 373
TaiI ACGT 4 cut(s) 44, 501, 590, 619
TaqI TCGA 6 cut(s) 209, 352, 435, 644, 728, 781
TasI AATT 6 cut(s) 147, 176, 298, 637, 724, 733
TfiI GAWTC 4 cut(s) 266, 311, 561, 876
Tru1I TTAA 2 cut(s) 44, 423
Tru9I TTAA 2 cut(s) 44, 423
TscAI CASTG 4 cut(s) 289, 378, 754, 835
TseFI GTSAC 2 cut(s) 9, 280
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 2 cut(s) 9, 280
TspDTI ATGAA 2 cut(s) 257, 311
TspGWI ACGGA 2 cut(s) 168, 473
TspRI CASTG 4 cut(s) 289, 378, 754, 835
Van91I CCANNNNNTGG 3 cut(s) 471, 571, 591
VpaK11BI GGWCC 4 cut(s) 126, 181, 704, 796
XagI CCTNNNNNAGG 1 cut(s) 189
XapI RAATTY 1 cut(s) 298
XmiI GTMKAC 3 cut(s) 88, 501, 816
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.