Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014190

Physical Location & Seq

Genomic Coordinates Forward (+)

26298728 .. 26300529

Gene Structure 1802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCTAAGATATATTCCCCTTCTTTTCCCGGTACTCTCTGTCTTTGCATTTTTACTCTCTTGACGCTAATGTTCATTCGGGTTTCCGCTCGACCCGCGACATTCGTCGAGGATTTCAAAGCCGCCTGGTCGGAATCTCACATCCGTCAAATGGAAGACGGAAAAGCTATCCAGCTCGTCCTTGATCAGAGCACTGGATGTGGATTTGCTTCCAAAAGAAAATATCTATTCGGACGAGTGAGCATGAAGATCAAACTCATTCCCGGAGACTCTGCCGGTACGGTCACCGCTTTCTACATGAACTCCGATACGGCCACGGTGAGAGACGAGCTAGATTTTGAGTTCTTGGGAAACAGAAGTGGTCAACCTTACTCAGTGCAAACAAACATATTTGCTCATGGCAAAGGAGATAGAGAACAAAGAGTTAATCTTTGGTTCGACCCATCTATGGATTACCACACTTACACTATCTTATGGTCACACAAACACATTGTTTTTTACGTAGACGATGTGCCAATAAGAGAATACAAAAACAACGAAGCCAAGAACATAGCTTACCCAACATCACAACCTATGGGAGTATACTCAACATTATGGGAAGCAGATGACTGGGCAACACGTGGTGGATTAGAGAAAATTGATTGGAGCAAAGCTCCATTTTATGCTTATTACAAAGATTTCGACATCGAAGGTTGTCCTGTTCCTGGACCAACCTTTTGTCCATCGAACCCTCATAATTGGTGGGAAGGTTATGCCTATCAGTCTCTTAACGCCGTTGAAGCTCGACGTTACCGGTGGGTTAGAGTAAACCATATGGTTTATGATTATTGTACTGACCGGTCTAGGTTTCCTGTCCCACCACCCGAGTGTCGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

292

Amino Acids

33.69

Weight (kDa)

6.65

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	37 - 217	2.1e-63	Glycosyl hydrolases family 16
XET_C	PF06955	243 - 290	3.1e-19	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37800 AT5G65730
fragaria_vesca	FvH4_1g18550
malus_domestica	MD02G1192600.v1.1 MD15G1303500.v1.1
prunus_persica	Prupe.6G213600_v2.0.a1 Prupe.6G213600_v2.0.a1
pyrus_communis	pycom02g15680 pycom15g26640
rosa_chinensis	RchiOBHm_Chr2g0109241
rosa_laevigata	RLG00000017728
rosa_multiflora	Rmu_sc0001807.1_g000003
rosa_roxburghii	Rroxscaffold_2G00134370
rosa_rugosa	Rorug02G0158800
rosa_samantha	Rh2AG210200 Rh2CG212600 Rh2DG216400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	89
AccI	GTMKAC	2 cut(s)	504, 582
AccII	CGCG	1 cut(s)	98
AciI	CCGC	4 cut(s)	87, 96, 123, 288
AcoI	YGGCCR	1 cut(s)	312
AcvI	CACGTG	1 cut(s)	620
AdeI	CACNNNGTG	1 cut(s)	623
AfaI	GTAC	3 cut(s)	34, 280, 832
AfiI	CCNNNNNNNGG	3 cut(s)	151, 448, 704
AflIII	ACRYGT	1 cut(s)	617
AgeI	ACCGGT	2 cut(s)	792, 837
AgsI	TTSAA	2 cut(s)	118, 779
AjnI	CCWGG	2 cut(s)	125, 703
AleI	CACNNNNGTG	1 cut(s)	865
AluBI	AGCT	6 cut(s)	167, 175, 331, 554, 653, 782
AluI	AGCT	6 cut(s)	167, 175, 331, 554, 653, 782
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	3 cut(s)	261, 318, 768
Ama87I	CYCGRG	1 cut(s)	863
AoxI	GGCC	1 cut(s)	312
ArsI	GACNNNNNNTTYG	2 cut(s)	699, 731
AsiGI	ACCGGT	2 cut(s)	792, 837
AspS9I	GGNCC	1 cut(s)	707
AsuC2I	CCSGG	2 cut(s)	30, 264
AsuHPI	GGTGA	2 cut(s)	277, 331
AvaI	CYCGRG	1 cut(s)	863
AvaII	GGWCC	1 cut(s)	707
BbrPI	CACGTG	1 cut(s)	620
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	194
BccI	CCATC	2 cut(s)	451, 730
BceAI	ACGGC	2 cut(s)	327, 758
BcgI	CGANNNNNNTGC	1 cut(s)	854
BciT130I	CCWGG	2 cut(s)	127, 705
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	2 cut(s)	30, 264
BcoDI	GTCTC	3 cut(s)	261, 318, 768
BfaI	CTAG	2 cut(s)	332, 843
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	4 cut(s)	30, 127, 264, 705
Bme18I	GGWCC	1 cut(s)	707
BmeT110I	CYCGRG	1 cut(s)	863
BmgT120I	GGNCC	1 cut(s)	707
BmrFI	CCNGG	4 cut(s)	30, 127, 264, 705
BmrI	ACTGGG	1 cut(s)	619
BmuI	ACTGGG	1 cut(s)	619
BoxI	GACNNNNGTC	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	637, 669
BpuMI	CCSGG	2 cut(s)	30, 264
BsaAI	YACGTR	2 cut(s)	502, 620
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	2 cut(s)	792, 837
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 448, 704
Bse118I	RCCGGY	3 cut(s)	275, 792, 837
Bse1I	ACTGG	2 cut(s)	199, 614
BseBI	CCWGG	2 cut(s)	127, 705
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	2 cut(s)	141, 203
BseLI	CCNNNNNNNGG	3 cut(s)	151, 448, 704
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	2 cut(s)	199, 614
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	314
BshTI	ACCGGT	2 cut(s)	792, 837
BsiHKAI	GWGCWC	1 cut(s)	194
BsiHKCI	CYCGRG	1 cut(s)	863
BsiSI	CCGG	5 cut(s)	30, 264, 276, 793, 838
BslFI	GGGAC	1 cut(s)	839
BslI	CCNNNNNNNGG	3 cut(s)	151, 448, 704
BsmAI	GTCTC	3 cut(s)	261, 318, 768
BsmBI	CGTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	839
BsnI	GGCC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	863
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	2 cut(s)	184, 249
BspACI	CCGC	4 cut(s)	87, 96, 123, 288
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	1 cut(s)	386
BspFNI	CGCG	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	89
BsrFI	RCCGGY	3 cut(s)	275, 792, 837
BsrI	ACTGG	2 cut(s)	199, 614
BssAI	RCCGGY	3 cut(s)	275, 792, 837
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	2 cut(s)	184, 249
BssNAI	GTATAC	1 cut(s)	583
Bst1107I	GTATAC	1 cut(s)	583
Bst2UI	CCWGG	2 cut(s)	127, 705
Bst4CI	ACNGT	2 cut(s)	283, 319
BstBAI	YACGTR	2 cut(s)	502, 620
BstDEI	CTNAG	2 cut(s)	6, 373
BstDSI	CCRYGG	1 cut(s)	315
BstEII	GGTNACC	1 cut(s)	283
BstF5I	GGATG	2 cut(s)	141, 203
BstFNI	CGCG	1 cut(s)	98
BstKTI	GATC	2 cut(s)	187, 252
BstMAI	GTCTC	3 cut(s)	261, 318, 768
BstMBI	GATC	2 cut(s)	184, 249
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 779
BstNI	CCWGG	2 cut(s)	127, 705
BstPAI	GACNNNNGTC	1 cut(s)	104
BstPI	GGTNACC	1 cut(s)	283
BstSCI	CCNGG	4 cut(s)	28, 125, 262, 703
BstSNI	TACGTA	1 cut(s)	502
BstUI	CGCG	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	162
BstZ17I	GTATAC	1 cut(s)	583
BsuRI	GGCC	1 cut(s)	314
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	141, 203
BtsIMutI	CAGTG	2 cut(s)	192, 381
Cfr10I	RCCGGY	3 cut(s)	275, 792, 837
Cfr13I	GGNCC	1 cut(s)	707
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	3 cut(s)	33, 279, 831
CspAI	ACCGGT	2 cut(s)	792, 837
CviAII	CATG	3 cut(s)	244, 298, 398
CviQI	GTAC	3 cut(s)	33, 279, 831
DdeI	CTNAG	2 cut(s)	6, 373
DpnI	GATC	2 cut(s)	186, 251
DpnII	GATC	2 cut(s)	184, 249
DraIII	CACNNNGTG	1 cut(s)	623
EaeI	YGGCCR	1 cut(s)	312
Eco105I	TACGTA	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	707
Eco72I	CACGTG	1 cut(s)	620
Eco88I	CYCGRG	1 cut(s)	863
Eco91I	GGTNACC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	283
EcoRII	CCWGG	2 cut(s)	125, 703
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	3 cut(s)	247, 301, 401
FaqI	GGGAC	1 cut(s)	839
FatI	CATG	3 cut(s)	243, 297, 397
FauI	CCCGC	1 cut(s)	103
FauNDI	CATATG	1 cut(s)	813
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	2 cut(s)	504, 582
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	2 cut(s)	128, 210
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	332, 843
GluI	GCNGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	5 cut(s)	30, 264, 276, 793, 838
HgaI	GACGC	1 cut(s)	73
Hin1II	CATG	3 cut(s)	247, 301, 401
HincII	GTYRAC	1 cut(s)	365
HindII	GTYRAC	1 cut(s)	365
HinfI	GANTC	2 cut(s)	134, 269
HpaII	CCGG	5 cut(s)	30, 264, 276, 793, 838
HphI	GGTGA	2 cut(s)	277, 331
Hpy166II	GTNNAC	4 cut(s)	365, 505, 583, 808
Hpy188I	TCNGA	4 cut(s)	133, 189, 233, 307
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	4 cut(s)	365, 505, 583, 808
Hpy99I	CGWCG	2 cut(s)	110, 789
HpyAV	CCTTC	3 cut(s)	30, 683, 740
HpyCH4III	ACNGT	2 cut(s)	283, 319
HpyCH4IV	ACGT	3 cut(s)	501, 619, 787
HpyCH4V	TGCA	2 cut(s)	48, 379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 779
HpyF3I	CTNAG	2 cut(s)	6, 373
HpySE526I	ACGT	3 cut(s)	501, 619, 787
Hsp92II	CATG	3 cut(s)	247, 301, 401
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	184, 249
LmnI	GCTCC	2 cut(s)	645, 658
MaeI	CTAG	2 cut(s)	332, 843
MaeII	ACGT	3 cut(s)	501, 619, 787
MaeIII	GTNAC	3 cut(s)	283, 477, 788
MalI	GATC	2 cut(s)	186, 251
MbiI	CCGCTC	1 cut(s)	89
MboI	GATC	2 cut(s)	184, 249
MboII	GAAGA	2 cut(s)	167, 259
MhlI	GDGCHC	1 cut(s)	194
MluCI	AATT	2 cut(s)	636, 736
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	2 cut(s)	103, 741
MseI	TTAA	2 cut(s)	426, 768
MslI	CAYNNNNRTG	1 cut(s)	865
MspI	CCGG	5 cut(s)	30, 264, 276, 793, 838
MspR9I	CCNGG	4 cut(s)	30, 127, 264, 705
MvaI	CCWGG	2 cut(s)	127, 705
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	95, 779
NciI	CCSGG	2 cut(s)	30, 264
NdeI	CATATG	1 cut(s)	813
NdeII	GATC	2 cut(s)	184, 249
NlaIII	CATG	3 cut(s)	247, 301, 401
NmuCI	GTSAC	2 cut(s)	283, 477
OliI	CACNNNNGTG	1 cut(s)	865
PfeI	GAWTC	1 cut(s)	134
PfoI	TCCNGGA	2 cut(s)	262, 703
PinAI	ACCGGT	2 cut(s)	792, 837
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	1 cut(s)	263
PmaCI	CACGTG	1 cut(s)	620
PmlI	CACGTG	1 cut(s)	620
PpsI	GAGTC	1 cut(s)	263
Ppu21I	YACGTR	2 cut(s)	502, 620
PshAI	GACNNNNGTC	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	125, 703
PspCI	CACGTG	1 cut(s)	620
PspEI	GGTNACC	1 cut(s)	283
PspGI	CCWGG	2 cut(s)	125, 703
PspPI	GGNCC	1 cut(s)	707
PsrI	GAACNNNNNNTAC	2 cut(s)	539, 571
RsaI	GTAC	3 cut(s)	34, 280, 832
RsaNI	GTAC	3 cut(s)	33, 279, 831
RseI	CAYNNNNRTG	1 cut(s)	865
SaqAI	TTAA	2 cut(s)	426, 768
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	2 cut(s)	184, 249
Sau96I	GGNCC	1 cut(s)	707
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	4 cut(s)	30, 127, 264, 705
SduI	GDGCHC	1 cut(s)	194
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	865
SnaBI	TACGTA	1 cut(s)	502
Sse9I	AATT	2 cut(s)	636, 736
SsiI	CCGC	4 cut(s)	87, 96, 123, 288
SspMI	CTAG	2 cut(s)	332, 843
StyD4I	CCNGG	4 cut(s)	28, 125, 262, 703
TaaI	ACNGT	2 cut(s)	283, 319
TaiI	ACGT	3 cut(s)	504, 622, 790
TaqI	TCGA	7 cut(s)	91, 108, 438, 681, 687, 725, 784
TasI	AATT	2 cut(s)	636, 736
TatI	WGTACW	1 cut(s)	830
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	426, 768
Tru9I	TTAA	2 cut(s)	426, 768
TscAI	CASTG	2 cut(s)	199, 381
TseFI	GTSAC	2 cut(s)	283, 477
Tsp45I	GTSAC	2 cut(s)	283, 477
TspDTI	ATGAA	3 cut(s)	64, 260, 314
TspGWI	ACGGA	2 cut(s)	134, 174
TspRI	CASTG	2 cut(s)	199, 381
VpaK11BI	GGWCC	1 cut(s)	707
XmiI	GTMKAC	2 cut(s)	504, 582
XspI	CTAG	2 cut(s)	332, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.