Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014190

Physical Location & Seq

Genomic Coordinates Reverse (-)

20529773 .. 20531041

Gene Structure 1269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017728

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTATCCCTTTATGAGGAGTAGTGTTACTGCTTCTATTTCCCTTTGTTTCCTTTCACTATTTTCCCTCTCAGCCTTTGCACGACCAGCCACTTTTCTTCAGGACTTCCAAGTCACATGGTCTGATTCTCATATCAGGCAAATCGATGGAGGGAGGGCCATCCAACTCGTTCTTGACCAAAACTCTGGTTGTGGCTTTTCCTCCAAACACAAGTACTTGTTTGGCCGTGTGAGCATGAAGATCAAGCTCATTCCCGGTGACTCTGCCGGAACTGTCACCGCTTTCTATATGAACTCGGACACAGATACAGTACGTGATGAGCTTGATTTTGAGTTCTTGGGGAACAGGACTGGACAGCCTTACACAGTCCAGACCAATATCTATGCTCATGGACAGGGTAACAGGGAGCAAAGGGTGAACCTCTGGTTTGACCCTGCTGCAGATTTCCACACCTACACAATTCTCTGGAACCATCACCATATTGTCTTCTATGTAGATGATGTGCCTATCAGGCTGTACAAGAACAATGAAGCTAAAGGAATCCCATACCCAAAGCTGCAACCCATGGGGGTGTTCTCAACATTGTGGGAAGCTGATGATTGGGCAACAAGAGGAGGGCTTGAGAAGATAAACTGGAGCAAAGCCCCCTTCTATGCTTATTACAAGGACTTTGATATCGAAGGATGCTCTGTGCCAGGACCAGCTAATTGTGTCTCAAGCACTAATAACTGGTGGGAAGGCACTGCTTACCAAGCACTCAATGCCCTTGAATATAGAAGATACAGGTGGGTTCGTATGAACCACATGATCTACGATTACTGCTCCGACAGATCCCGGTACCCAAGACCCCCACCCGAGTGTGTCGCCGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

292

Amino Acids

33.49

Weight (kDa)

6.7

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	34 - 214	2.8e-65	Glycosyl hydrolases family 16
XET_C	PF06955	240 - 287	1.7e-18	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37800 AT5G65730
fragaria_vesca	FvH4_1g18550
malus_domestica	MD02G1192600.v1.1 MD15G1303500.v1.1
prunus_persica	Prupe.6G213600_v2.0.a1 Prupe.6G213600_v2.0.a1
pyrus_communis	pycom02g15680 pycom15g26640
rosa_chinensis	RchiOBHm_Chr2g0109241
rosa_laevigata	RLG00000017728
rosa_multiflora	Rmu_sc0001807.1_g000003
rosa_roxburghii	Rroxscaffold_2G00134370
rosa_rugosa	Rorug02G0158800
rosa_samantha	Rh2AG210200 Rh2CG212600 Rh2DG216400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
Acc65I	GGTACC	1 cut(s)	837
AccB1I	GGYRCC	1 cut(s)	837
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	1 cut(s)	825
AcoI	YGGCCR	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	4 cut(s)	215, 312, 518, 839
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	770
AjnI	CCWGG	1 cut(s)	694
AleI	CACNNNNGTG	1 cut(s)	856
AluBI	AGCT	6 cut(s)	247, 322, 533, 556, 593, 704
AluI	AGCT	6 cut(s)	247, 322, 533, 556, 593, 704
Alw26I	GTCTC	1 cut(s)	718
AlwI	GGATC	1 cut(s)	825
Ama87I	CYCGRG	1 cut(s)	854
AoxI	GGCC	3 cut(s)	156, 223, 868
ApeKI	GCWGC	2 cut(s)	437, 556
Asp718I	GGTACC	1 cut(s)	837
AspS9I	GGNCC	2 cut(s)	156, 698
AsuC2I	CCSGG	2 cut(s)	255, 835
AsuHPI	GGTGA	4 cut(s)	268, 269, 427, 467
AvaI	CYCGRG	1 cut(s)	854
AvaII	GGWCC	1 cut(s)	698
BanI	GGYRCC	1 cut(s)	837
BbsI	GAAGAC	1 cut(s)	478
BbvI	GCAGC	2 cut(s)	424, 543
BccI	CCATC	3 cut(s)	140, 167, 480
BceAI	ACGGC	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	696
BciVI	GTATCC	1 cut(s)	15
BcnI	CCSGG	2 cut(s)	255, 835
BcoDI	GTCTC	1 cut(s)	718
BfmI	CTRYAG	1 cut(s)	438
BfuI	GTATCC	1 cut(s)	15
BglI	GCCNNNNNGGC	1 cut(s)	511
BisI	GCNGC	2 cut(s)	438, 557
BlsI	GCNGC	2 cut(s)	439, 558
BmcAI	AGTACT	1 cut(s)	215
Bme1390I	CCNGG	3 cut(s)	255, 696, 835
Bme18I	GGWCC	1 cut(s)	698
BmeT110I	CYCGRG	1 cut(s)	854
BmgT120I	GGNCC	2 cut(s)	156, 698
BmiI	GGNNCC	2 cut(s)	470, 839
BmrFI	CCNGG	3 cut(s)	255, 696, 835
BmsI	GCATC	1 cut(s)	674
BpiI	GAAGAC	1 cut(s)	478
BpmI	CTGGAG	1 cut(s)	655
BpuEI	CTTGAG	2 cut(s)	641, 700
BpuMI	CCSGG	2 cut(s)	255, 835
Bsa29I	ATCGAT	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse118I	RCCGGY	1 cut(s)	866
Bse1I	ACTGG	3 cut(s)	355, 638, 734
BseBI	CCWGG	1 cut(s)	696
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	2 cut(s)	159, 689
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	3 cut(s)	355, 638, 734
BseRI	GAGGAG	2 cut(s)	31, 627
BseXI	GCAGC	2 cut(s)	424, 543
BshFI	GGCC	3 cut(s)	158, 225, 870
BshNI	GGYRCC	1 cut(s)	837
BshVI	ATCGAT	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	854
BsiSI	CCGG	4 cut(s)	255, 267, 835, 867
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	718
BsnI	GGCC	3 cut(s)	158, 225, 870
BsoBI	CYCGRG	1 cut(s)	854
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	240, 807, 830
Bsp19I	CCATGG	1 cut(s)	564
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	3 cut(s)	158, 225, 870
BspCNI	CTCAG	1 cut(s)	83
BspDI	ATCGAT	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	470, 839
BspMAI	CTGCAG	1 cut(s)	442
BspPI	GGATC	1 cut(s)	825
BspT107I	GGYRCC	1 cut(s)	837
BsrFI	RCCGGY	1 cut(s)	866
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	3 cut(s)	355, 638, 734
BssAI	RCCGGY	1 cut(s)	866
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	3 cut(s)	240, 807, 830
BssT1I	CCWWGG	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	3 cut(s)	274, 310, 367
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstAUI	TGTACA	1 cut(s)	516
BstBAI	YACGTR	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	868
BstDEI	CTNAG	1 cut(s)	70
BstDSI	CCRYGG	1 cut(s)	564
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstF5I	GGATG	2 cut(s)	159, 689
BstKTI	GATC	3 cut(s)	243, 810, 833
BstMAI	GTCTC	1 cut(s)	718
BstMBI	GATC	3 cut(s)	240, 807, 830
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 231, 511, 752, 761
BstNI	CCWGG	1 cut(s)	696
BstSCI	CCNGG	3 cut(s)	253, 694, 833
BstSFI	CTRYAG	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	424, 543
BstV2I	GAAGAC	1 cut(s)	478
BstX2I	RGATCY	1 cut(s)	830
BstXI	CCANNNNNNTGG	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	830
Bsu15I	ATCGAT	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	158, 225, 870
BsuTUI	ATCGAT	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	564
BtsCI	GGATG	2 cut(s)	159, 689
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	1 cut(s)	868
Cfr10I	RCCGGY	1 cut(s)	866
Cfr13I	GGNCC	2 cut(s)	156, 698
ClaI	ATCGAT	1 cut(s)	144
Csp6I	GTAC	4 cut(s)	214, 311, 517, 838
CviAII	CATG	5 cut(s)	117, 235, 389, 565, 805
CviQI	GTAC	4 cut(s)	214, 311, 517, 838
DdeI	CTNAG	1 cut(s)	70
DpnI	GATC	3 cut(s)	242, 809, 832
DpnII	GATC	3 cut(s)	240, 807, 830
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	564
Eco32I	GATATC	1 cut(s)	676
Eco47I	GGWCC	1 cut(s)	698
Eco57I	CTGAAG	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	854
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	694
EcoRV	GATATC	1 cut(s)	676
EcoT14I	CCWWGG	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	5 cut(s)	120, 238, 392, 568, 808
FatI	CATG	5 cut(s)	116, 234, 388, 564, 804
Fnu4HI	GCNGC	2 cut(s)	438, 557
FokI	GGATG	2 cut(s)	146, 696
Fsp4HI	GCNGC	2 cut(s)	438, 557
GluI	GCNGC	2 cut(s)	438, 557
GsuI	CTGGAG	1 cut(s)	655
HaeIII	GGCC	3 cut(s)	158, 225, 870
HapII	CCGG	4 cut(s)	255, 267, 835, 867
Hin1II	CATG	5 cut(s)	120, 238, 392, 568, 808
HinfI	GANTC	3 cut(s)	125, 260, 540
HpaII	CCGG	4 cut(s)	255, 267, 835, 867
HphI	GGTGA	4 cut(s)	268, 269, 427, 467
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	3 cut(s)	124, 298, 826
Hpy188III	TCNNGA	4 cut(s)	101, 173, 370, 466
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	3 cut(s)	658, 674, 731
HpyCH4III	ACNGT	3 cut(s)	274, 310, 367
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	3 cut(s)	80, 440, 559
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 231, 511, 752, 761
HpyF3I	CTNAG	1 cut(s)	70
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	5 cut(s)	120, 238, 392, 568, 808
KpnI	GGTACC	1 cut(s)	841
KroI	GCCGGC	1 cut(s)	866
KroNI	GCCGGC	1 cut(s)	868
Kzo9I	GATC	3 cut(s)	240, 807, 830
LmnI	GCTCC	3 cut(s)	406, 636, 827
Lsp1109I	GCAGC	2 cut(s)	424, 543
LweI	GCATC	1 cut(s)	674
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	5 cut(s)	25, 112, 257, 274, 398
MalI	GATC	3 cut(s)	242, 809, 832
MboI	GATC	3 cut(s)	240, 807, 830
MboII	GAAGA	5 cut(s)	89, 250, 478, 637, 789
MflI	RGATCY	1 cut(s)	830
MluCI	AATT	2 cut(s)	459, 706
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	2 cut(s)	187, 849
MnlI	CCTC	8 cut(s)	9, 77, 143, 147, 211, 431, 605, 608
MroNI	GCCGGC	1 cut(s)	866
MslI	CAYNNNNRTG	2 cut(s)	569, 856
MspI	CCGG	4 cut(s)	255, 267, 835, 867
MspR9I	CCNGG	3 cut(s)	255, 696, 835
MvaI	CCWGG	1 cut(s)	696
MwoI	GCNNNNNNNGC	5 cut(s)	86, 231, 511, 752, 761
NaeI	GCCGGC	1 cut(s)	868
NciI	CCSGG	2 cut(s)	255, 835
NcoI	CCATGG	1 cut(s)	564
NdeII	GATC	3 cut(s)	240, 807, 830
NgoMIV	GCCGGC	1 cut(s)	866
NlaIII	CATG	5 cut(s)	120, 238, 392, 568, 808
NlaIV	GGNNCC	2 cut(s)	470, 839
NmuCI	GTSAC	3 cut(s)	112, 257, 274
OliI	CACNNNNGTG	1 cut(s)	856
PdiI	GCCGGC	1 cut(s)	868
PfeI	GAWTC	2 cut(s)	125, 540
PkrI	GCNGC	2 cut(s)	439, 558
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	2 cut(s)	470, 839
PspPI	GGNCC	2 cut(s)	156, 698
PstI	CTGCAG	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	830
RsaI	GTAC	4 cut(s)	215, 312, 518, 839
RsaNI	GTAC	4 cut(s)	214, 311, 517, 838
RseI	CAYNNNNRTG	2 cut(s)	569, 856
SatI	GCNGC	2 cut(s)	438, 557
Sau3AI	GATC	3 cut(s)	240, 807, 830
Sau96I	GGNCC	2 cut(s)	156, 698
ScaI	AGTACT	1 cut(s)	215
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	3 cut(s)	255, 696, 835
SfaNI	GCATC	1 cut(s)	674
SfcI	CTRYAG	1 cut(s)	438
SinI	GGWCC	1 cut(s)	698
SmiMI	CAYNNNNRTG	2 cut(s)	569, 856
SmlI	CTYRAG	2 cut(s)	620, 715
SmoI	CTYRAG	2 cut(s)	620, 715
Sse9I	AATT	2 cut(s)	459, 706
SsiI	CCGC	1 cut(s)	279
StyD4I	CCNGG	3 cut(s)	253, 694, 833
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	3 cut(s)	274, 310, 367
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	2 cut(s)	144, 678
TasI	AATT	2 cut(s)	459, 706
TatI	WGTACW	2 cut(s)	213, 516
TfiI	GAWTC	2 cut(s)	125, 540
TscAI	CASTG	1 cut(s)	748
TseFI	GTSAC	3 cut(s)	112, 257, 274
TseI	GCWGC	2 cut(s)	437, 556
Tsp45I	GTSAC	3 cut(s)	112, 257, 274
TspDTI	ATGAA	4 cut(s)	251, 305, 543, 812
TspRI	CASTG	1 cut(s)	748
VpaK11BI	GGWCC	1 cut(s)	698
XagI	CCTNNNNNAGG	1 cut(s)	13
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.