Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014190

Physical Location & Seq

Genomic Coordinates Reverse (-)

10897645 .. 10899784

Gene Structure 2140 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTATCCCTCTTTGAGGAGTGGTAGTGTTATTGCTTCTATTTCCCTATGTTTTCTTTCACTATTTTCTCTCTCAGCCTTTGCACGACCAGCCACTTTTCTTCAGGATTTCCAAGTCACATGGTCTGATTCTCATATCAGGCAAATCGATGGAGGCAGGGCCATCCAGCTCGTTCTTGACCAAAATTCTGGTTGTGGCTTTTCCTCTAAACACAAGTACTTGTTTGGCCGTGTGAGCATGAAGATCAAACTCATTCCCGGTGACTCTGCCGGAACTGTCACCGCTTTCTATATGAACTCGGACACAGATGCAGTACGTGATGAGCTTGATTTTGAGTTCTTGGGGAACAGGACCGGACAGCCTTACACAGTCCAGACCAACATCTATGCTCATGGACAGGGTAATAGGGAGGAAAGGGTCAACCTCTGGTTTGACCCTGCTGCAGATTTCCACACTTACACAATTCTCTGGAACCATCACCATATTGTCTTCTATGTGGATGATGTGCCTATCAGGCTGTACAAGAATAATGAAGCCAAAGGAATCCCATACCCAAAGCTCCAACCCATGGGAGTGTTCTCAACATTGTGGGAAGCTGATGATTGGGCAACAAGAGGAGGGCTTGAGAAGATAAACTGGAGCAAAGCTCCCTTCTATGCTTATTACAAGGACTTTGATATTGAAGGATGCTCTGTGCCAGGACCAGCCAATTGTGCCTCAAGCGCCCAAAACTGGTGGGAAGGCACTGCCTACCAAGCACTCAATGCCCTAGAATACAGAAGATACAAGTGGGTTCGTATGAACCACATGATCTACGATTACTGCTCCGACAGGTCTCGGTACCCAAAACCTCCACCGGAGTGTGTCGCCGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

293

Amino Acids

33.35

Weight (kDa)

6.44

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	35 - 215	6.3e-65	Glycosyl hydrolases family 16
XET_C	PF06955	241 - 288	1.1e-18	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37800 AT5G65730
fragaria_vesca	FvH4_1g18550
malus_domestica	MD02G1192600.v1.1 MD15G1303500.v1.1
prunus_persica	Prupe.6G213600_v2.0.a1 Prupe.6G213600_v2.0.a1
pyrus_communis	pycom02g15680 pycom15g26640
rosa_chinensis	RchiOBHm_Chr2g0109241
rosa_laevigata	RLG00000017728
rosa_multiflora	Rmu_sc0001807.1_g000003
rosa_roxburghii	Rroxscaffold_2G00134370
rosa_rugosa	Rorug02G0158800
rosa_samantha	Rh2AG210200 Rh2CG212600 Rh2DG216400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	840
AccB1I	GGYRCC	1 cut(s)	840
AccB7I	CCANNNNNTGG	1 cut(s)	568
AciI	CCGC	1 cut(s)	282
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	4 cut(s)	218, 315, 521, 842
AfiI	CCNNNNNNNGG	3 cut(s)	15, 568, 732
AgsI	TTSAA	1 cut(s)	683
AjnI	CCWGG	1 cut(s)	697
AleI	CACNNNNGTG	1 cut(s)	859
AluBI	AGCT	5 cut(s)	169, 325, 559, 596, 647
AluI	AGCT	5 cut(s)	169, 325, 559, 596, 647
Alw26I	GTCTC	1 cut(s)	840
AoxI	GGCC	3 cut(s)	159, 226, 871
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	184
Asp718I	GGTACC	1 cut(s)	840
AspLEI	GCGC	1 cut(s)	725
AspS9I	GGNCC	3 cut(s)	159, 351, 701
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	3 cut(s)	271, 272, 470
AvaII	GGWCC	2 cut(s)	351, 701
BanI	GGYRCC	1 cut(s)	840
BbsI	GAAGAC	1 cut(s)	481
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	3 cut(s)	143, 170, 483
BceAI	ACGGC	1 cut(s)	213
BciT130I	CCWGG	1 cut(s)	699
BciVI	GTATCC	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	840
BfaI	CTAG	1 cut(s)	770
BfmI	CTRYAG	1 cut(s)	441
BfoI	RGCGCY	1 cut(s)	726
BfuI	GTATCC	1 cut(s)	15
BglI	GCCNNNNNGGC	1 cut(s)	514
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	258, 699
Bme18I	GGWCC	2 cut(s)	351, 701
BmgT120I	GGNCC	3 cut(s)	159, 351, 701
BmiI	GGNNCC	2 cut(s)	473, 842
BmrFI	CCNGG	2 cut(s)	258, 699
BmsI	GCATC	2 cut(s)	298, 677
BpiI	GAAGAC	1 cut(s)	481
BplI	GAGNNNNNCTC	2 cut(s)	631, 663
BpmI	CTGGAG	1 cut(s)	658
BpuEI	CTTGAG	2 cut(s)	644, 703
BpuMI	CCSGG	1 cut(s)	258
Bsa29I	ATCGAT	1 cut(s)	147
BsaAI	YACGTR	1 cut(s)	317
BsaI	GGTCTC	1 cut(s)	840
BsaJI	CCNNGG	1 cut(s)	567
BsaWI	WCCGGW	2 cut(s)	353, 856
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 568, 732
Bse118I	RCCGGY	1 cut(s)	869
Bse1I	ACTGG	2 cut(s)	641, 737
BseBI	CCWGG	1 cut(s)	699
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	3 cut(s)	162, 505, 692
BseLI	CCNNNNNNNGG	3 cut(s)	15, 568, 732
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	2 cut(s)	641, 737
BseRI	GAGGAG	2 cut(s)	31, 630
BseXI	GCAGC	1 cut(s)	427
BshFI	GGCC	3 cut(s)	161, 228, 873
BshNI	GGYRCC	1 cut(s)	840
BshVI	ATCGAT	1 cut(s)	147
BsiSI	CCGG	5 cut(s)	258, 270, 354, 857, 870
BslI	CCNNNNNNNGG	3 cut(s)	15, 568, 732
BsmAI	GTCTC	1 cut(s)	840
BsnI	GGCC	3 cut(s)	161, 228, 873
Bso31I	GGTCTC	1 cut(s)	840
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	2 cut(s)	243, 810
Bsp19I	CCATGG	1 cut(s)	567
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	3 cut(s)	161, 228, 873
BspCNI	CTCAG	1 cut(s)	86
BspDI	ATCGAT	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	473, 842
BspMAI	CTGCAG	1 cut(s)	445
BspT107I	GGYRCC	1 cut(s)	840
BspTNI	GGTCTC	1 cut(s)	840
BsrFI	RCCGGY	1 cut(s)	869
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	2 cut(s)	641, 737
BssAI	RCCGGY	1 cut(s)	869
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	2 cut(s)	243, 810
BssT1I	CCWWGG	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	2 cut(s)	277, 370
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstAUI	TGTACA	1 cut(s)	519
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	871
BstDEI	CTNAG	1 cut(s)	73
BstDSI	CCRYGG	1 cut(s)	567
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstF5I	GGATG	3 cut(s)	162, 505, 692
BstH2I	RGCGCY	1 cut(s)	726
BstHHI	GCGC	1 cut(s)	725
BstKTI	GATC	2 cut(s)	246, 813
BstMAI	GTCTC	1 cut(s)	840
BstMBI	GATC	2 cut(s)	243, 810
BstMWI	GCNNNNNNNGC	7 cut(s)	89, 234, 514, 713, 722, 755, 764
BstNI	CCWGG	1 cut(s)	699
BstSCI	CCNGG	2 cut(s)	256, 697
BstSFI	CTRYAG	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	481
BstXI	CCANNNNNNTGG	1 cut(s)	188
Bsu15I	ATCGAT	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	161, 228, 873
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	567
BtsCI	GGATG	3 cut(s)	162, 505, 692
BtsI	GCAGTG	1 cut(s)	744
BtsIMutI	CAGTG	1 cut(s)	744
Cac8I	GCNNGC	1 cut(s)	871
CfoI	GCGC	1 cut(s)	725
Cfr10I	RCCGGY	1 cut(s)	869
Cfr13I	GGNCC	3 cut(s)	159, 351, 701
ClaI	ATCGAT	1 cut(s)	147
Csp6I	GTAC	4 cut(s)	217, 314, 520, 841
CspCI	CAANNNNNGTGG	2 cut(s)	716, 751
CviAII	CATG	5 cut(s)	120, 238, 392, 568, 808
CviQI	GTAC	4 cut(s)	217, 314, 520, 841
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	2 cut(s)	245, 812
DpnII	GATC	2 cut(s)	243, 810
EaeI	YGGCCR	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	567
Eco31I	GGTCTC	1 cut(s)	840
Eco47I	GGWCC	2 cut(s)	351, 701
Eco57I	CTGAAG	1 cut(s)	86
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	697
EcoT14I	CCWWGG	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	5 cut(s)	123, 241, 395, 571, 811
FatI	CATG	5 cut(s)	119, 237, 391, 567, 807
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	3 cut(s)	149, 512, 699
Fsp4HI	GCNGC	1 cut(s)	441
FspBI	CTAG	1 cut(s)	770
GlaI	GCGC	1 cut(s)	724
GluI	GCNGC	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	658
HaeII	RGCGCY	1 cut(s)	726
HaeIII	GGCC	3 cut(s)	161, 228, 873
HapII	CCGG	5 cut(s)	258, 270, 354, 857, 870
HhaI	GCGC	1 cut(s)	725
Hin1II	CATG	5 cut(s)	123, 241, 395, 571, 811
Hin6I	GCGC	1 cut(s)	723
HinP1I	GCGC	1 cut(s)	723
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	3 cut(s)	128, 263, 543
HpaII	CCGG	5 cut(s)	258, 270, 354, 857, 870
HphI	GGTGA	3 cut(s)	271, 272, 470
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	3 cut(s)	127, 301, 829
Hpy188III	TCNNGA	4 cut(s)	104, 176, 373, 469
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	3 cut(s)	661, 677, 734
HpyCH4III	ACNGT	2 cut(s)	277, 370
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	3 cut(s)	83, 311, 443
HpyF10VI	GCNNNNNNNGC	7 cut(s)	89, 234, 514, 713, 722, 755, 764
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	5 cut(s)	123, 241, 395, 571, 811
HspAI	GCGC	1 cut(s)	723
KpnI	GGTACC	1 cut(s)	844
KroI	GCCGGC	1 cut(s)	869
KroNI	GCCGGC	1 cut(s)	871
Kzo9I	GATC	2 cut(s)	243, 810
LmnI	GCTCC	4 cut(s)	564, 639, 652, 830
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	2 cut(s)	298, 677
MaeI	CTAG	1 cut(s)	770
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	3 cut(s)	115, 260, 277
MalI	GATC	2 cut(s)	245, 812
MboI	GATC	2 cut(s)	243, 810
MboII	GAAGA	5 cut(s)	92, 253, 481, 640, 792
MfeI	CAATTG	1 cut(s)	709
MluCI	AATT	3 cut(s)	184, 462, 709
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	2 cut(s)	586, 852
MroNI	GCCGGC	1 cut(s)	869
MslI	CAYNNNNRTG	2 cut(s)	572, 859
MspI	CCGG	5 cut(s)	258, 270, 354, 857, 870
MspR9I	CCNGG	2 cut(s)	258, 699
MunI	CAATTG	1 cut(s)	709
MvaI	CCWGG	1 cut(s)	699
MwoI	GCNNNNNNNGC	7 cut(s)	89, 234, 514, 713, 722, 755, 764
NaeI	GCCGGC	1 cut(s)	871
NciI	CCSGG	1 cut(s)	258
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	2 cut(s)	243, 810
NgoMIV	GCCGGC	1 cut(s)	869
NlaIII	CATG	5 cut(s)	123, 241, 395, 571, 811
NlaIV	GGNNCC	2 cut(s)	473, 842
NmuCI	GTSAC	3 cut(s)	115, 260, 277
OliI	CACNNNNGTG	1 cut(s)	859
PdiI	GCCGGC	1 cut(s)	871
PfeI	GAWTC	2 cut(s)	128, 543
PflMI	CCANNNNNTGG	1 cut(s)	568
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Ppu21I	YACGTR	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	2 cut(s)	473, 842
PspPI	GGNCC	3 cut(s)	159, 351, 701
PstI	CTGCAG	1 cut(s)	445
RsaI	GTAC	4 cut(s)	218, 315, 521, 842
RsaNI	GTAC	4 cut(s)	217, 314, 520, 841
RseI	CAYNNNNRTG	2 cut(s)	572, 859
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	2 cut(s)	243, 810
Sau96I	GGNCC	3 cut(s)	159, 351, 701
ScaI	AGTACT	1 cut(s)	218
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	258, 699
SetI	ASST	9 cut(s)	171, 319, 327, 426, 561, 598, 649, 836, 853
SfaNI	GCATC	2 cut(s)	298, 677
SfcI	CTRYAG	1 cut(s)	441
SinI	GGWCC	2 cut(s)	351, 701
SmiMI	CAYNNNNRTG	2 cut(s)	572, 859
SmlI	CTYRAG	2 cut(s)	623, 718
SmoI	CTYRAG	2 cut(s)	623, 718
Sse9I	AATT	3 cut(s)	184, 462, 709
SsiI	CCGC	1 cut(s)	282
SspMI	CTAG	1 cut(s)	770
StyD4I	CCNGG	2 cut(s)	256, 697
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	2 cut(s)	277, 370
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	147
TasI	AATT	3 cut(s)	184, 462, 709
TatI	WGTACW	2 cut(s)	216, 519
TfiI	GAWTC	2 cut(s)	128, 543
TscAI	CASTG	1 cut(s)	751
TseFI	GTSAC	3 cut(s)	115, 260, 277
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	3 cut(s)	115, 260, 277
TspDTI	ATGAA	4 cut(s)	254, 308, 546, 815
TspRI	CASTG	1 cut(s)	751
Van91I	CCANNNNNTGG	1 cut(s)	568
VpaK11BI	GGWCC	2 cut(s)	351, 701
XagI	CCTNNNNNAGG	1 cut(s)	13
XapI	RAATTY	1 cut(s)	184
XspI	CTAG	1 cut(s)	770
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.