Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014190

Physical Location & Seq

Genomic Coordinates Reverse (-)

29467091 .. 29470090

Gene Structure 3000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1303500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCCCTTTACCTTAGTTGGAGTTGGAGGGCTGTCGTTGCTTCTTTCTGCTTTTGTTTTCTTTCTTTATTTTCTCTCTCAGCTTTTGGACGACCAGCCACTTTTCTTCAGGACTTCCAAGTCACATGGTCCGATTCTCATATCAGGCAAATCGATGGAGGGAGGGCCATCCAACTCGTTCTTGACCAAAATTCTGGATGTGGGTTTGCCTCCAAGCACAAGTACTTGTTTGGGCGTGTGAGCATGAAGATCAAGCTCATCCCTGGAGACTCTGCTGGAACCGTCACCGCTTTTTATATGAACTCCGACACCAATACAGTTCGTGACGAGTTAGATTTTGAATTCTTGGGGAACCGGACTGGACAGCCTTATACAGTCCAAACCAATATCTATGCTCATGGGAAGGGCGATAGGGAGCAAAGGGTTAATCTCTGGTTTGACCCTGCTGCAGACTTCCACACTTACACTATCCTCTGGAACCATCACCATATTGTCTTCTATGTGGATGATGTGCCTATAAGGGTGTACAAGAACAATGAAGCCAGAGGAATCCCATACCCAAAGCTCCAACCAATGGGGGTGTTTTCGACATTGTGGGAGGCCGACGATTGGGCTACCAGAGGAGGACTTGAGAAGATCGACTGGAGCAAAGCCCCTTTCTATTCATATTACAAAGATTTTGACATTGAGGGATGCCCTGTGCCAGGACCAGCCTCATGTGCCTCAAGCACCAACAACTGGTGGGAAGGCGCTTCATACCAAGCCCTCAACGCCCTTGAGTATCGAAGATACAGGTGGGTTCGTATCAACCACATGATCTACGATTACTGCACCGACAGATCCCGGTACCCAGTAGCCCCACCAGAGTGTACCGCCGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

295

Amino Acids

33.82

Weight (kDa)

6.44

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	37 - 217	2.3e-65	Glycosyl hydrolases family 16
XET_C	PF06955	243 - 290	1.3e-18	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37800 AT5G65730
fragaria_vesca	FvH4_1g18550
malus_domestica	MD02G1192600.v1.1 MD15G1303500.v1.1
prunus_persica	Prupe.6G213600_v2.0.a1 Prupe.6G213600_v2.0.a1
pyrus_communis	pycom02g15680 pycom15g26640
rosa_chinensis	RchiOBHm_Chr2g0109241
rosa_laevigata	RLG00000017728
rosa_multiflora	Rmu_sc0001807.1_g000003
rosa_roxburghii	Rroxscaffold_2G00134370
rosa_rugosa	Rorug02G0158800
rosa_samantha	Rh2AG210200 Rh2CG212600 Rh2DG216400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
Acc65I	GGTACC	1 cut(s)	846
AccB1I	GGYRCC	1 cut(s)	846
AccB7I	CCANNNNNTGG	2 cut(s)	574, 738
AciI	CCGC	2 cut(s)	288, 873
AclWI	GGATC	1 cut(s)	834
AcsI	RAATTY	2 cut(s)	190, 341
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	4 cut(s)	224, 527, 848, 871
AfiI	CCNNNNNNNGG	4 cut(s)	574, 609, 704, 738
AgsI	TTSAA	1 cut(s)	341
AjnI	CCWGG	2 cut(s)	262, 703
AleI	CACNNNNGTG	1 cut(s)	865
AluBI	AGCT	3 cut(s)	83, 256, 565
AluI	AGCT	3 cut(s)	83, 256, 565
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	834
AoxI	GGCC	3 cut(s)	3, 165, 600
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	2 cut(s)	190, 341
Asp718I	GGTACC	1 cut(s)	846
AspLEI	GCGC	1 cut(s)	752
AspS9I	GGNCC	4 cut(s)	4, 129, 165, 707
AsuC2I	CCSGG	1 cut(s)	844
AsuHPI	GGTGA	2 cut(s)	277, 476
AvaII	GGWCC	2 cut(s)	129, 707
BanI	GGYRCC	1 cut(s)	846
BbsI	GAAGAC	1 cut(s)	487
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	3 cut(s)	149, 176, 489
BciT130I	CCWGG	2 cut(s)	264, 705
BcnI	CCSGG	1 cut(s)	844
BcoDI	GTCTC	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	447
BfoI	RGCGCY	1 cut(s)	753
BisI	GCNGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	448
BmcAI	AGTACT	1 cut(s)	224
Bme1390I	CCNGG	3 cut(s)	264, 705, 844
Bme18I	GGWCC	2 cut(s)	129, 707
BmgT120I	GGNCC	4 cut(s)	4, 129, 165, 707
BmiI	GGNNCC	4 cut(s)	280, 353, 479, 848
BmrFI	CCNGG	3 cut(s)	264, 705, 844
BmrI	ACTGGG	1 cut(s)	845
BmsI	GCATC	1 cut(s)	683
BmuI	ACTGGG	1 cut(s)	845
BpiI	GAAGAC	1 cut(s)	487
BpmI	CTGGAG	2 cut(s)	285, 664
BpuEI	CTTGAG	3 cut(s)	650, 709, 797
BpuMI	CCSGG	1 cut(s)	844
Bsa29I	ATCGAT	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	4 cut(s)	574, 609, 704, 738
Bse118I	RCCGGY	1 cut(s)	875
Bse1I	ACTGG	4 cut(s)	364, 647, 743, 851
BseBI	CCWGG	2 cut(s)	264, 705
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	5 cut(s)	168, 203, 258, 511, 698
BseLI	CCNNNNNNNGG	4 cut(s)	574, 609, 704, 738
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	4 cut(s)	364, 647, 743, 851
BseRI	GAGGAG	1 cut(s)	636
BseXI	GCAGC	1 cut(s)	433
BsgI	GTGCAG	1 cut(s)	814
BshFI	GGCC	3 cut(s)	5, 167, 602
BshNI	GGYRCC	1 cut(s)	846
BshVI	ATCGAT	1 cut(s)	153
BsiSI	CCGG	3 cut(s)	355, 844, 876
BslI	CCNNNNNNNGG	4 cut(s)	574, 609, 704, 738
BsmAI	GTCTC	1 cut(s)	261
BsnI	GGCC	3 cut(s)	5, 167, 602
Bsp1407I	TGTACA	1 cut(s)	525
Bsp143I	GATC	4 cut(s)	249, 636, 816, 839
BspACI	CCGC	2 cut(s)	288, 873
BspANI	GGCC	3 cut(s)	5, 167, 602
BspCNI	CTCAG	1 cut(s)	92
BspDI	ATCGAT	1 cut(s)	153
BspLI	GGNNCC	4 cut(s)	280, 353, 479, 848
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	1 cut(s)	834
BspT107I	GGYRCC	1 cut(s)	846
BsrFI	RCCGGY	1 cut(s)	875
BsrGI	TGTACA	1 cut(s)	525
BsrI	ACTGG	4 cut(s)	364, 647, 743, 851
BssAI	RCCGGY	1 cut(s)	875
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	4 cut(s)	249, 636, 816, 839
Bst2UI	CCWGG	2 cut(s)	264, 705
Bst4CI	ACNGT	3 cut(s)	283, 319, 376
BstAUI	TGTACA	1 cut(s)	525
BstC8I	GCNNGC	1 cut(s)	877
BstDEI	CTNAG	2 cut(s)	14, 79
BstENI	CCTNNNNNAGG	1 cut(s)	702
BstF5I	GGATG	5 cut(s)	168, 203, 258, 511, 698
BstH2I	RGCGCY	1 cut(s)	753
BstHHI	GCGC	1 cut(s)	752
BstKTI	GATC	4 cut(s)	252, 639, 819, 842
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	4 cut(s)	249, 636, 816, 839
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 719, 770
BstNI	CCWGG	2 cut(s)	264, 705
BstSCI	CCNGG	3 cut(s)	262, 703, 842
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	1 cut(s)	433
BstV2I	GAAGAC	1 cut(s)	487
BstX2I	RGATCY	1 cut(s)	839
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	839
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	5, 167, 602
BsuTUI	ATCGAT	1 cut(s)	153
BtsCI	GGATG	5 cut(s)	168, 203, 258, 511, 698
Cac8I	GCNNGC	1 cut(s)	877
CfoI	GCGC	1 cut(s)	752
Cfr10I	RCCGGY	1 cut(s)	875
Cfr13I	GGNCC	4 cut(s)	4, 129, 165, 707
ClaI	ATCGAT	1 cut(s)	153
Csp6I	GTAC	4 cut(s)	223, 526, 847, 870
CviAII	CATG	5 cut(s)	126, 244, 398, 717, 814
CviQI	GTAC	4 cut(s)	223, 526, 847, 870
DdeI	CTNAG	2 cut(s)	14, 79
DpnI	GATC	4 cut(s)	251, 638, 818, 841
DpnII	GATC	4 cut(s)	249, 636, 816, 839
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eco47I	GGWCC	2 cut(s)	129, 707
Eco57I	CTGAAG	1 cut(s)	92
EcoNI	CCTNNNNNAGG	1 cut(s)	702
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	262, 703
FaeI	CATG	5 cut(s)	129, 247, 401, 720, 817
FatI	CATG	5 cut(s)	125, 243, 397, 716, 813
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	5 cut(s)	155, 210, 245, 518, 705
Fsp4HI	GCNGC	1 cut(s)	447
GlaI	GCGC	1 cut(s)	751
GluI	GCNGC	1 cut(s)	447
GsuI	CTGGAG	2 cut(s)	285, 664
HaeII	RGCGCY	1 cut(s)	753
HaeIII	GGCC	3 cut(s)	5, 167, 602
HapII	CCGG	3 cut(s)	355, 844, 876
HhaI	GCGC	1 cut(s)	752
Hin1II	CATG	5 cut(s)	129, 247, 401, 720, 817
Hin6I	GCGC	1 cut(s)	750
HinP1I	GCGC	1 cut(s)	750
HinfI	GANTC	3 cut(s)	134, 269, 549
HpaII	CCGG	3 cut(s)	355, 844, 876
HphI	GGTGA	2 cut(s)	277, 476
Hpy166II	GTNNAC	2 cut(s)	526, 870
Hpy188I	TCNGA	2 cut(s)	133, 307
Hpy188III	TCNNGA	5 cut(s)	110, 182, 195, 323, 475
Hpy8I	GTNNAC	2 cut(s)	526, 870
Hpy99I	CGWCG	1 cut(s)	608
HpyAV	CCTTC	2 cut(s)	397, 740
HpyCH4III	ACNGT	3 cut(s)	283, 319, 376
HpyCH4V	TGCA	2 cut(s)	449, 831
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 719, 770
HpyF3I	CTNAG	2 cut(s)	14, 79
Hsp92II	CATG	5 cut(s)	129, 247, 401, 720, 817
HspAI	GCGC	1 cut(s)	750
KpnI	GGTACC	1 cut(s)	850
KroI	GCCGGC	1 cut(s)	875
KroNI	GCCGGC	1 cut(s)	877
Kzo9I	GATC	4 cut(s)	249, 636, 816, 839
LmnI	GCTCC	3 cut(s)	415, 570, 645
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	1 cut(s)	683
MaeIII	GTNAC	3 cut(s)	121, 283, 323
MalI	GATC	4 cut(s)	251, 638, 818, 841
MboI	GATC	4 cut(s)	249, 636, 816, 839
MboII	GAAGA	5 cut(s)	98, 259, 487, 646, 798
MflI	RGATCY	1 cut(s)	839
MluCI	AATT	2 cut(s)	190, 341
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	4 cut(s)	5, 196, 330, 592
MroNI	GCCGGC	1 cut(s)	875
MseI	TTAA	1 cut(s)	426
MslI	CAYNNNNRTG	1 cut(s)	865
MspI	CCGG	3 cut(s)	355, 844, 876
MspR9I	CCNGG	3 cut(s)	264, 705, 844
MvaI	CCWGG	2 cut(s)	264, 705
MwoI	GCNNNNNNNGC	3 cut(s)	38, 719, 770
NaeI	GCCGGC	1 cut(s)	877
NciI	CCSGG	1 cut(s)	844
NdeII	GATC	4 cut(s)	249, 636, 816, 839
NgoMIV	GCCGGC	1 cut(s)	875
NlaIII	CATG	5 cut(s)	129, 247, 401, 720, 817
NlaIV	GGNNCC	4 cut(s)	280, 353, 479, 848
NmuCI	GTSAC	3 cut(s)	121, 283, 323
OliI	CACNNNNGTG	1 cut(s)	865
PdiI	GCCGGC	1 cut(s)	877
PfeI	GAWTC	2 cut(s)	134, 549
PflMI	CCANNNNNTGG	2 cut(s)	574, 738
PkrI	GCNGC	1 cut(s)	448
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	262, 703
PspGI	CCWGG	2 cut(s)	262, 703
PspN4I	GGNNCC	4 cut(s)	280, 353, 479, 848
PspPI	GGNCC	4 cut(s)	4, 129, 165, 707
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	839
RsaI	GTAC	4 cut(s)	224, 527, 848, 871
RsaNI	GTAC	4 cut(s)	223, 526, 847, 870
RseI	CAYNNNNRTG	1 cut(s)	865
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	4 cut(s)	249, 636, 816, 839
Sau96I	GGNCC	4 cut(s)	4, 129, 165, 707
ScaI	AGTACT	1 cut(s)	224
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	3 cut(s)	264, 705, 844
SetI	ASST	5 cut(s)	15, 85, 258, 567, 797
SfaNI	GCATC	1 cut(s)	683
SfcI	CTRYAG	1 cut(s)	447
SinI	GGWCC	2 cut(s)	129, 707
SmiMI	CAYNNNNRTG	1 cut(s)	865
SmlI	CTYRAG	3 cut(s)	629, 724, 776
SmoI	CTYRAG	3 cut(s)	629, 724, 776
Sse9I	AATT	2 cut(s)	190, 341
SsiI	CCGC	2 cut(s)	288, 873
StyD4I	CCNGG	3 cut(s)	262, 703, 842
TaaI	ACNGT	3 cut(s)	283, 319, 376
TaqI	TCGA	4 cut(s)	153, 587, 639, 784
TasI	AATT	2 cut(s)	190, 341
TatI	WGTACW	2 cut(s)	222, 525
TfiI	GAWTC	2 cut(s)	134, 549
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TseFI	GTSAC	3 cut(s)	121, 283, 323
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	3 cut(s)	121, 283, 323
TspDTI	ATGAA	5 cut(s)	260, 314, 552, 654, 744
Van91I	CCANNNNNTGG	2 cut(s)	574, 738
VpaK11BI	GGWCC	2 cut(s)	129, 707
XagI	CCTNNNNNAGG	1 cut(s)	702
XapI	RAATTY	2 cut(s)	190, 341
ZrmI	AGTACT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.