Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001807.1

Orthogroup ID

OG0014190

Physical Location & Seq

Genomic Coordinates Reverse (-)

8529 .. 9785

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001807.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgaggagtagtgttactgcttctatttccctttgtttcctttcactattttccctctcagcctttgcacgacccgccacttttcttcaggacttccaagtcacatggtctgattctcatatcaggcaaatcgatggagggagggccatccaacttgttcttgaccaaaactctggttgtggcttttcctccaaacacaagtacttgtttggccgtgtgagcatgaagatcaagctcattcccggtgactctgccggaactgtcaccgctttctatatgaactcggacacagatacagtacgtgatgagcttgattttgagttcttggggaacaggactggacagccttacacagtccagaccaatatctatgctcgtggacagggtaacagggagcaaagggtgaacctctggtttgaccctgctgcagatttccacacttacacaattctctggaaccatcaccatattgtcttctatgtagatgatgtgcctatcaggctgtacaagaacaatgaagctaaaggaatcccatacccaaagctccaacccatgggggtgttctcaacattgtgggaagctgatgattgggcaacaagaggagggcttgagaagataaactggagcaaagcccccttctatgcttattacaaggactttgacatcgaaggatgctctgtgccaggaccagctaattgtgcctcaagcactaataactggtgggaaggcactgcttaccaagcactcaatgcccttgaatatagaagatacaagtgggttcgtatgaaccacatgatctacgattactgctccgacagatcccggtacccaagacccccacccgagtgtgtcgccggcctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

287

Amino Acids

32.91

Weight (kDa)

7.03

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37800 AT5G65730
fragaria_vesca	FvH4_1g18550
malus_domestica	MD02G1192600.v1.1 MD15G1303500.v1.1
prunus_persica	Prupe.6G213600_v2.0.a1 Prupe.6G213600_v2.0.a1
pyrus_communis	pycom02g15680 pycom15g26640
rosa_chinensis	RchiOBHm_Chr2g0109241
rosa_laevigata	RLG00000017728
rosa_multiflora	Rmu_sc0001807.1_g000003
rosa_roxburghii	Rroxscaffold_2G00134370
rosa_rugosa	Rorug02G0158800
rosa_samantha	Rh2AG210200 Rh2CG212600 Rh2DG216400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
Acc65I	GGTACC	1 cut(s)	825
AccB1I	GGYRCC	1 cut(s)	825
AccB7I	CCANNNNNTGG	1 cut(s)	553
AciI	CCGC	2 cut(s)	75, 267
AclWI	GGATC	1 cut(s)	813
AcoI	YGGCCR	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	4 cut(s)	203, 300, 506, 827
AfiI	CCNNNNNNNGG	1 cut(s)	553
AgsI	TTSAA	1 cut(s)	758
AjnI	CCWGG	1 cut(s)	682
AleI	CACNNNNGTG	1 cut(s)	844
AluBI	AGCT	6 cut(s)	235, 310, 521, 544, 581, 692
AluI	AGCT	6 cut(s)	235, 310, 521, 544, 581, 692
AlwI	GGATC	1 cut(s)	813
Ama87I	CYCGRG	1 cut(s)	842
AoxI	GGCC	3 cut(s)	144, 211, 856
ApeKI	GCWGC	1 cut(s)	425
Asp718I	GGTACC	1 cut(s)	825
AspS9I	GGNCC	2 cut(s)	144, 686
AsuC2I	CCSGG	2 cut(s)	243, 823
AsuHPI	GGTGA	4 cut(s)	256, 257, 415, 455
AvaI	CYCGRG	1 cut(s)	842
AvaII	GGWCC	1 cut(s)	686
BanI	GGYRCC	1 cut(s)	825
BauI	CACGAG	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	466
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	3 cut(s)	128, 155, 468
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	1 cut(s)	684
BcnI	CCSGG	2 cut(s)	243, 823
BfmI	CTRYAG	1 cut(s)	426
BglI	GCCNNNNNGGC	1 cut(s)	499
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	3 cut(s)	243, 684, 823
Bme18I	GGWCC	1 cut(s)	686
BmeT110I	CYCGRG	1 cut(s)	842
BmgT120I	GGNCC	2 cut(s)	144, 686
BmiI	GGNNCC	2 cut(s)	458, 827
BmrFI	CCNGG	3 cut(s)	243, 684, 823
BmsI	GCATC	1 cut(s)	662
BpiI	GAAGAC	1 cut(s)	466
BpmI	CTGGAG	1 cut(s)	643
BpuEI	CTTGAG	2 cut(s)	629, 688
BpuMI	CCSGG	2 cut(s)	243, 823
Bsa29I	ATCGAT	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	552
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse118I	RCCGGY	1 cut(s)	854
Bse1I	ACTGG	3 cut(s)	343, 626, 722
BseBI	CCWGG	1 cut(s)	684
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	2 cut(s)	147, 677
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	3 cut(s)	343, 626, 722
BseRI	GAGGAG	2 cut(s)	19, 615
BseXI	GCAGC	1 cut(s)	412
BshFI	GGCC	3 cut(s)	146, 213, 858
BshNI	GGYRCC	1 cut(s)	825
BshVI	ATCGAT	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	842
BsiSI	CCGG	4 cut(s)	243, 255, 823, 855
BslI	CCNNNNNNNGG	1 cut(s)	553
BsnI	GGCC	3 cut(s)	146, 213, 858
BsoBI	CYCGRG	1 cut(s)	842
Bsp1407I	TGTACA	1 cut(s)	504
Bsp143I	GATC	3 cut(s)	228, 795, 818
Bsp19I	CCATGG	1 cut(s)	552
BspACI	CCGC	2 cut(s)	75, 267
BspANI	GGCC	3 cut(s)	146, 213, 858
BspCNI	CTCAG	1 cut(s)	71
BspDI	ATCGAT	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	458, 827
BspMAI	CTGCAG	1 cut(s)	430
BspPI	GGATC	1 cut(s)	813
BspT107I	GGYRCC	1 cut(s)	825
BsrFI	RCCGGY	1 cut(s)	854
BsrGI	TGTACA	1 cut(s)	504
BsrI	ACTGG	3 cut(s)	343, 626, 722
BssAI	RCCGGY	1 cut(s)	854
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	3 cut(s)	228, 795, 818
BssSI	CACGAG	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	552
Bst2BI	CACGAG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	3 cut(s)	262, 298, 355
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstAUI	TGTACA	1 cut(s)	504
BstBAI	YACGTR	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	856
BstDEI	CTNAG	1 cut(s)	58
BstDSI	CCRYGG	1 cut(s)	552
BstF5I	GGATG	2 cut(s)	147, 677
BstKTI	GATC	3 cut(s)	231, 798, 821
BstMBI	GATC	3 cut(s)	228, 795, 818
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 219, 499, 698, 740, 749
BstNI	CCWGG	1 cut(s)	684
BstSCI	CCNGG	3 cut(s)	241, 682, 821
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	466
BstX2I	RGATCY	1 cut(s)	818
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	818
Bsu15I	ATCGAT	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	146, 213, 858
BsuTUI	ATCGAT	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	552
BtsCI	GGATG	2 cut(s)	147, 677
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	1 cut(s)	729
Cac8I	GCNNGC	1 cut(s)	856
Cfr10I	RCCGGY	1 cut(s)	854
Cfr13I	GGNCC	2 cut(s)	144, 686
ClaI	ATCGAT	1 cut(s)	132
Csp6I	GTAC	4 cut(s)	202, 299, 505, 826
CviAII	CATG	4 cut(s)	105, 223, 553, 793
CviQI	GTAC	4 cut(s)	202, 299, 505, 826
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	3 cut(s)	230, 797, 820
DpnII	GATC	3 cut(s)	228, 795, 818
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
EaeI	YGGCCR	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	686
Eco57I	CTGAAG	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	842
EcoRII	CCWGG	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	4 cut(s)	108, 226, 556, 796
FatI	CATG	4 cut(s)	104, 222, 552, 792
FauI	CCCGC	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	2 cut(s)	134, 684
Fsp4HI	GCNGC	1 cut(s)	426
GluI	GCNGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	643
HaeIII	GGCC	3 cut(s)	146, 213, 858
HapII	CCGG	4 cut(s)	243, 255, 823, 855
Hin1II	CATG	4 cut(s)	108, 226, 556, 796
HinfI	GANTC	3 cut(s)	113, 248, 528
HpaII	CCGG	4 cut(s)	243, 255, 823, 855
HphI	GGTGA	4 cut(s)	256, 257, 415, 455
Hpy166II	GTNNAC	2 cut(s)	380, 406
Hpy188I	TCNGA	3 cut(s)	112, 286, 814
Hpy188III	TCNNGA	4 cut(s)	89, 161, 358, 454
Hpy8I	GTNNAC	2 cut(s)	380, 406
HpyAV	CCTTC	3 cut(s)	646, 662, 719
HpyCH4III	ACNGT	3 cut(s)	262, 298, 355
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	2 cut(s)	68, 428
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 219, 499, 698, 740, 749
HpyF3I	CTNAG	1 cut(s)	58
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	4 cut(s)	108, 226, 556, 796
KpnI	GGTACC	1 cut(s)	829
KroI	GCCGGC	1 cut(s)	854
KroNI	GCCGGC	1 cut(s)	856
Kzo9I	GATC	3 cut(s)	228, 795, 818
LmnI	GCTCC	4 cut(s)	394, 549, 624, 815
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	1 cut(s)	662
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	5 cut(s)	13, 100, 245, 262, 386
MalI	GATC	3 cut(s)	230, 797, 820
MboI	GATC	3 cut(s)	228, 795, 818
MboII	GAAGA	5 cut(s)	77, 238, 466, 625, 777
MflI	RGATCY	1 cut(s)	818
MluCI	AATT	2 cut(s)	447, 694
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	3 cut(s)	175, 571, 837
MnlI	CCTC	8 cut(s)	65, 131, 135, 199, 419, 593, 596, 712
MroNI	GCCGGC	1 cut(s)	854
MslI	CAYNNNNRTG	2 cut(s)	557, 844
MspI	CCGG	4 cut(s)	243, 255, 823, 855
MspR9I	CCNGG	3 cut(s)	243, 684, 823
MvaI	CCWGG	1 cut(s)	684
MwoI	GCNNNNNNNGC	6 cut(s)	74, 219, 499, 698, 740, 749
NaeI	GCCGGC	1 cut(s)	856
NciI	CCSGG	2 cut(s)	243, 823
NcoI	CCATGG	1 cut(s)	552
NdeII	GATC	3 cut(s)	228, 795, 818
NgoMIV	GCCGGC	1 cut(s)	854
NlaIII	CATG	4 cut(s)	108, 226, 556, 796
NlaIV	GGNNCC	2 cut(s)	458, 827
NmuCI	GTSAC	3 cut(s)	100, 245, 262
OliI	CACNNNNGTG	1 cut(s)	844
PdiI	GCCGGC	1 cut(s)	856
PfeI	GAWTC	2 cut(s)	113, 528
PflMI	CCANNNNNTGG	1 cut(s)	553
PkrI	GCNGC	1 cut(s)	427
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
Ppu21I	YACGTR	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	2 cut(s)	458, 827
PspPI	GGNCC	2 cut(s)	144, 686
PstI	CTGCAG	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	818
RsaI	GTAC	4 cut(s)	203, 300, 506, 827
RsaNI	GTAC	4 cut(s)	202, 299, 505, 826
RseI	CAYNNNNRTG	2 cut(s)	557, 844
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	3 cut(s)	228, 795, 818
Sau96I	GGNCC	2 cut(s)	144, 686
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	3 cut(s)	243, 684, 823
SetI	ASST	8 cut(s)	237, 304, 312, 411, 523, 546, 583, 694
SfaNI	GCATC	1 cut(s)	662
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	1 cut(s)	686
SmiMI	CAYNNNNRTG	2 cut(s)	557, 844
SmlI	CTYRAG	2 cut(s)	608, 703
SmoI	CTYRAG	2 cut(s)	608, 703
Sse9I	AATT	2 cut(s)	447, 694
SsiI	CCGC	2 cut(s)	75, 267
StyD4I	CCNGG	3 cut(s)	241, 682, 821
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	3 cut(s)	262, 298, 355
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	2 cut(s)	132, 666
TasI	AATT	2 cut(s)	447, 694
TatI	WGTACW	2 cut(s)	201, 504
TfiI	GAWTC	2 cut(s)	113, 528
TscAI	CASTG	1 cut(s)	736
TseFI	GTSAC	3 cut(s)	100, 245, 262
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	3 cut(s)	100, 245, 262
TspDTI	ATGAA	4 cut(s)	239, 293, 531, 800
TspRI	CASTG	1 cut(s)	736
Van91I	CCANNNNNTGG	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	686
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.