Prupe.6G213600_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
22139410 .. 22141164
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G213600.2

Sequence Viewer

Length: 876 bp
ATGGCCCTATATCCCTCTTTGAGAAGCCTCATTGCTTCTCTCTGCTTTTGTTTTCTTGCTTTTTCTCTCTCAGCTTTTGGACGACCAGCCACTTTTCTGCAAGACTTCCAAGTCACATGGTCTGATTCTCACATCAGGCAGATCGATGGAGGGAGGGCCATCCAACTCATTCTTGACCAAAATTCTGGATGTGGGTTTGCCTCCAAACGCAAGTACTTGTTTGGGCGTGTGAGCATGAAGATCAAGCTCATCCCTGGAGATTCTGCTGGAACTGTCACTGCTTTCTATATGAACTCAAACACAGACGCAGTGCGTGATGAGGTAGACTTTGAGTTCTTGGGGAACCGGACTGGGCAGCCTTATACAGTCCAAACCAATATATATGCTCATGGGAAGGGTAATAGGGAGCAAAGGGTCAACCTCTGGTTTGACCCTGCTGCAGATTTCCACACTTACACAATACTCTGGAACCATCACCATATTGTTTTCTATGTGGATGATGTGCCTATAAGGGTGTACAAGAACAATGAAGCCAGAGGAGTTCCATACCCCAAGCTCCAACCCATGGGGGTCTTTTCAACATTGTGGGAAGCTGATGATTGGGCTACAAGAGGAGGGCTTGAGAAGATAAACTGGAGCAAAGCTCCTTTCTTTTCTTACTACAAGGATTTTGATATTGAGGGGTGCTCTGTGCCAGGACCAGCCAACTGTGCCTCAAGCGCCACTAACTGGTGGGAAGGGACTGCCTACCAAGCACTCAATGCCCTTGAATATAGAAGATACAGGTGGGTTCGTATCAACCACATGATCTACGATTACTGCACCGATAAATCCCGGTACCCGGTAGCCCCACCGGAGTGTCTCGCGGGCTTCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

292

Amino Acids

33.27

Weight (kDa)

7.6

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014190)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
Acc65I GGTACC 1 cut(s) 837
AccB1I GGYRCC 1 cut(s) 837
AccB7I CCANNNNNTGG 2 cut(s) 565, 729
AccI GTMKAC 1 cut(s) 324
AccII CGCG 1 cut(s) 866
AciI CCGC 1 cut(s) 866
AcsI RAATTY 1 cut(s) 181
AfaI GTAC 3 cut(s) 215, 518, 839
AfiI CCNNNNNNNGG 3 cut(s) 565, 729, 841
AgsI TTSAA 2 cut(s) 579, 770
AjnI CCWGG 2 cut(s) 253, 694
AleI CACNNNNGTG 1 cut(s) 856
AluBI AGCT 5 cut(s) 74, 247, 556, 593, 644
AluI AGCT 5 cut(s) 74, 247, 556, 593, 644
Alw21I GWGCWC 1 cut(s) 689
Alw26I GTCTC 1 cut(s) 866
AoxI GGCC 2 cut(s) 3, 156
ApeKI GCWGC 2 cut(s) 355, 437
ApoI RAATTY 1 cut(s) 181
Asp718I GGTACC 1 cut(s) 837
AspLEI GCGC 1 cut(s) 722
AspS9I GGNCC 3 cut(s) 4, 156, 698
AsuC2I CCSGG 2 cut(s) 835, 842
AsuHPI GGTGA 1 cut(s) 467
AvaII GGWCC 1 cut(s) 698
BanI GGYRCC 1 cut(s) 837
Bbv12I GWGCWC 1 cut(s) 689
BbvI GCAGC 2 cut(s) 367, 424
BccI CCATC 3 cut(s) 140, 167, 480
BciT130I CCWGG 2 cut(s) 255, 696
BcnI CCSGG 2 cut(s) 835, 842
BcoDI GTCTC 1 cut(s) 866
BfmI CTRYAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 723
BisI GCNGC 2 cut(s) 356, 438
BlsI GCNGC 2 cut(s) 357, 439
BmcAI AGTACT 1 cut(s) 215
Bme1390I CCNGG 4 cut(s) 255, 696, 835, 842
Bme18I GGWCC 1 cut(s) 698
BmgT120I GGNCC 3 cut(s) 4, 156, 698
BmiI GGNNCC 3 cut(s) 344, 470, 839
BmrFI CCNGG 4 cut(s) 255, 696, 835, 842
BmrI ACTGGG 1 cut(s) 360
BmuI ACTGGG 1 cut(s) 360
BplI GAGNNNNNCTC 4 cut(s) 628, 660, 671, 703
BpmI CTGGAG 2 cut(s) 276, 655
BpuEI CTTGAG 2 cut(s) 641, 700
BpuMI CCSGG 2 cut(s) 835, 842
Bsa29I ATCGAT 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 253, 564
BsaWI WCCGGW 2 cut(s) 345, 853
Bsc4I CCNNNNNNNGG 3 cut(s) 565, 729, 841
Bse1I ACTGG 3 cut(s) 355, 638, 734
Bse3DI GCAATG 1 cut(s) 30
BseBI CCWGG 2 cut(s) 255, 696
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 253, 564
BseGI GGATG 4 cut(s) 159, 194, 249, 502
BseLI CCNNNNNNNGG 3 cut(s) 565, 729, 841
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 3 cut(s) 355, 638, 734
BseRI GAGGAG 2 cut(s) 552, 627
BseXI GCAGC 2 cut(s) 367, 424
BsgI GTGCAG 1 cut(s) 805
Bsh1236I CGCG 1 cut(s) 866
BshFI GGCC 2 cut(s) 5, 158
BshNI GGYRCC 1 cut(s) 837
BshVI ATCGAT 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 689
BsiSI CCGG 4 cut(s) 346, 835, 842, 854
BslFI GGGAC 1 cut(s) 754
BslI CCNNNNNNNGG 3 cut(s) 565, 729, 841
BsmAI GTCTC 1 cut(s) 866
BsmFI GGGAC 1 cut(s) 754
BsnI GGCC 2 cut(s) 5, 158
Bsp1286I GDGCHC 1 cut(s) 689
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 3 cut(s) 141, 240, 807
Bsp19I CCATGG 1 cut(s) 564
BspACI CCGC 1 cut(s) 866
BspANI GGCC 2 cut(s) 5, 158
BspCNI CTCAG 1 cut(s) 83
BspDI ATCGAT 1 cut(s) 144
BspFNI CGCG 1 cut(s) 866
BspLI GGNNCC 3 cut(s) 344, 470, 839
BspMAI CTGCAG 1 cut(s) 442
BspT107I GGYRCC 1 cut(s) 837
BsrDI GCAATG 1 cut(s) 30
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 3 cut(s) 355, 638, 734
BssECI CCNNGG 2 cut(s) 253, 564
BssMI GATC 3 cut(s) 141, 240, 807
BssT1I CCWWGG 1 cut(s) 564
Bst2UI CCWGG 2 cut(s) 255, 696
Bst4CI ACNGT 3 cut(s) 274, 367, 710
BstAPI GCANNNNNTGC 1 cut(s) 761
BstAUI TGTACA 1 cut(s) 516
BstC8I GCNNGC 1 cut(s) 868
BstDEI CTNAG 1 cut(s) 70
BstDSI CCRYGG 1 cut(s) 564
BstF5I GGATG 4 cut(s) 159, 194, 249, 502
BstFNI CGCG 1 cut(s) 866
BstH2I RGCGCY 1 cut(s) 723
BstHHI GCGC 1 cut(s) 722
BstKTI GATC 3 cut(s) 144, 243, 810
BstMAI GTCTC 1 cut(s) 866
BstMBI GATC 3 cut(s) 141, 240, 807
BstMWI GCNNNNNNNGC 4 cut(s) 710, 719, 752, 761
BstNI CCWGG 2 cut(s) 255, 696
BstSCI CCNGG 4 cut(s) 253, 694, 833, 840
BstSFI CTRYAG 1 cut(s) 438
BstUI CGCG 1 cut(s) 866
BstV1I GCAGC 2 cut(s) 367, 424
BstXI CCANNNNNNTGG 1 cut(s) 185
Bsu15I ATCGAT 1 cut(s) 144
BsuRI GGCC 2 cut(s) 5, 158
BsuTUI ATCGAT 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 564
BtsCI GGATG 4 cut(s) 159, 194, 249, 502
BtsI GCAGTG 2 cut(s) 276, 315
BtsIMutI CAGTG 2 cut(s) 276, 315
Cac8I GCNNGC 1 cut(s) 868
CfoI GCGC 1 cut(s) 722
Cfr13I GGNCC 3 cut(s) 4, 156, 698
ClaI ATCGAT 1 cut(s) 144
CseI GACGC 1 cut(s) 314
Csp6I GTAC 3 cut(s) 214, 517, 838
CviAII CATG 5 cut(s) 117, 235, 389, 565, 805
CviQI GTAC 3 cut(s) 214, 517, 838
DdeI CTNAG 1 cut(s) 70
DpnI GATC 3 cut(s) 143, 242, 809
DpnII GATC 3 cut(s) 141, 240, 807
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 698
EcoRII CCWGG 2 cut(s) 253, 694
EcoT14I CCWWGG 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 564
FaeI CATG 5 cut(s) 120, 238, 392, 568, 808
FaqI GGGAC 1 cut(s) 754
FatI CATG 5 cut(s) 116, 234, 388, 564, 804
FauI CCCGC 1 cut(s) 859
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 2 cut(s) 356, 438
FokI GGATG 4 cut(s) 146, 201, 236, 509
Fsp4HI GCNGC 2 cut(s) 356, 438
GlaI GCGC 1 cut(s) 721
GluI GCNGC 2 cut(s) 356, 438
GsuI CTGGAG 2 cut(s) 276, 655
HaeII RGCGCY 1 cut(s) 723
HaeIII GGCC 2 cut(s) 5, 158
HapII CCGG 4 cut(s) 346, 835, 842, 854
HgaI GACGC 1 cut(s) 314
HhaI GCGC 1 cut(s) 722
Hin1II CATG 5 cut(s) 120, 238, 392, 568, 808
Hin6I GCGC 1 cut(s) 720
HinP1I GCGC 1 cut(s) 720
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 2 cut(s) 125, 260
HpaII CCGG 4 cut(s) 346, 835, 842, 854
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 3 cut(s) 325, 418, 517
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 173, 186, 466
Hpy8I GTNNAC 3 cut(s) 325, 418, 517
HpyAV CCTTC 2 cut(s) 388, 731
HpyCH4III ACNGT 3 cut(s) 274, 367, 710
HpyCH4V TGCA 3 cut(s) 100, 440, 822
HpyF10VI GCNNNNNNNGC 4 cut(s) 710, 719, 752, 761
HpyF3I CTNAG 1 cut(s) 70
Hsp92II CATG 5 cut(s) 120, 238, 392, 568, 808
HspAI GCGC 1 cut(s) 720
KpnI GGTACC 1 cut(s) 841
Kzo9I GATC 3 cut(s) 141, 240, 807
LmnI GCTCC 4 cut(s) 406, 561, 636, 649
Lsp1109I GCAGC 2 cut(s) 367, 424
MaeIII GTNAC 2 cut(s) 112, 274
MalI GATC 3 cut(s) 143, 242, 809
MboI GATC 3 cut(s) 141, 240, 807
MboII GAAGA 3 cut(s) 250, 637, 789
MhlI GDGCHC 1 cut(s) 689
MluCI AATT 1 cut(s) 181
MmeI TCCRAC 2 cut(s) 187, 583
MslI CAYNNNNRTG 1 cut(s) 856
MspI CCGG 4 cut(s) 346, 835, 842, 854
MspR9I CCNGG 4 cut(s) 255, 696, 835, 842
MvaI CCWGG 2 cut(s) 255, 696
MvnI CGCG 1 cut(s) 866
MwoI GCNNNNNNNGC 4 cut(s) 710, 719, 752, 761
NciI CCSGG 2 cut(s) 835, 842
NcoI CCATGG 1 cut(s) 564
NdeII GATC 3 cut(s) 141, 240, 807
NlaIII CATG 5 cut(s) 120, 238, 392, 568, 808
NlaIV GGNNCC 3 cut(s) 344, 470, 839
NmuCI GTSAC 2 cut(s) 112, 274
OliI CACNNNNGTG 1 cut(s) 856
PfeI GAWTC 2 cut(s) 125, 260
PflMI CCANNNNNTGG 2 cut(s) 565, 729
PkrI GCNGC 2 cut(s) 357, 439
Psp6I CCWGG 2 cut(s) 253, 694
PspGI CCWGG 2 cut(s) 253, 694
PspN4I GGNNCC 3 cut(s) 344, 470, 839
PspPI GGNCC 3 cut(s) 4, 156, 698
PstI CTGCAG 1 cut(s) 442
RsaI GTAC 3 cut(s) 215, 518, 839
RsaNI GTAC 3 cut(s) 214, 517, 838
RseI CAYNNNNRTG 1 cut(s) 856
SatI GCNGC 2 cut(s) 356, 438
Sau3AI GATC 3 cut(s) 141, 240, 807
Sau96I GGNCC 3 cut(s) 4, 156, 698
ScaI AGTACT 1 cut(s) 215
ScrFI CCNGG 4 cut(s) 255, 696, 835, 842
SduI GDGCHC 1 cut(s) 689
SetI ASST 8 cut(s) 76, 249, 324, 423, 558, 595, 646, 788
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 1 cut(s) 698
SmiMI CAYNNNNRTG 1 cut(s) 856
SmlI CTYRAG 2 cut(s) 620, 715
SmoI CTYRAG 2 cut(s) 620, 715
Sse9I AATT 1 cut(s) 181
SsiI CCGC 1 cut(s) 866
StyD4I CCNGG 4 cut(s) 253, 694, 833, 840
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 3 cut(s) 274, 367, 710
TaqI TCGA 1 cut(s) 144
TasI AATT 1 cut(s) 181
TatI WGTACW 2 cut(s) 213, 516
TfiI GAWTC 2 cut(s) 125, 260
TscAI CASTG 2 cut(s) 283, 315
TseFI GTSAC 2 cut(s) 112, 274
TseI GCWGC 2 cut(s) 355, 437
Tsp45I GTSAC 2 cut(s) 112, 274
TspDTI ATGAA 3 cut(s) 251, 305, 543
TspRI CASTG 2 cut(s) 283, 315
Van91I CCANNNNNTGG 2 cut(s) 565, 729
VpaK11BI GGWCC 1 cut(s) 698
XapI RAATTY 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 324
ZrmI AGTACT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.