AT4G37930

Belongs to the SHMT family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
17831731 .. 17835017
3287 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37930.1

Sequence Viewer

Length: 1554 bp
ATGGCGATGGCCATGGCTCTTCGAAGGCTTTCTTCTTCAATTGACAAACCCATTCGTCCTCTTATTCGATCCACTTCATGTTACATGTCTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAAGCTGTTGGGTCTGTCATGACTAACAAATACAGTGAAGGCTATCCTGGTGCCAGATACTATGGAGGAAATGAGTATATAGACATGGCAGAAACCTTATGCCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTGCATTGTTAAAGCCTCATGAAAGAATCATGGCACTTGATCTTCCTCATGGTGGTCATCTTTCTCATGGTTATCAGACTGACACCAAGAAGATATCAGCTGTGTCTATCTTCTTTGAAACAATGCCCTATAGATTGGACGAGAGCACTGGCTACATCGACTACGATCAGATGGAGAAAAGTGCTACTCTTTTCAGGCCAAAATTGATTGTTGCTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGGTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAGTGGTTTGGTTGCTGCTAATGTAATCCCTTCACCGTTCGACTATGCTGATGTTGTAACCACCACAACTCACAAGTCACTTCGTGGACCCCGTGGAGCCATGATTTTCTTCAGAAAGGGTGTTAAGGAAATTAACAAGCAAGGGAAAGAGGTTTTGTATGATTTTGAAGACAAGATCAACCAAGCTGTCTTCCCTGGTCTTCAAGGTGGTCCACACAACCACACTATCACAGGACTAGCTGTTGCTTTGAAACAGGCAACTACTTCAGAGTACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCATCTGGTTCTAGTGAATCTAAAGCCCAAGGGAATTGATGGATCTAGAGTTGAGAAAGTGTTGGAAGCTGTTCACATTGCATCCAACAAAAACACTGTTCCTGGAGATGTTTCTGCCATGGTTCCTGGTGGAATCAGAATGGGTACTCCTGCTCTCACTTCCAGAGGCTTTGTTGAGGAAGACTTTGCCAAAGTAGCTGAATACTTCGACAAAGCTGTGACAATAGCTCTCAAAGTCAAATCTGAAGCTCAAGGAACCAAGTTGAAGGATTTCGTGTCAGCAATGGAATCCTCTTCAACCATCCAATCCGAGATTGCGAAACTGCGCCATGAAGTCGAGGAATTCGCTAAGCAGTTCCCAACAATTGGGTTTGAGAAAGAAACCATGAAGTACAAGAACTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

517

Amino Acids

57.4

Weight (kDa)

8.13

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SHMT PF00464 55 - 452 8.3e-215 Serine hydroxymethyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 323
AccB7I CCANNNNNTGG 1 cut(s) 1517
AccII CGCG 1 cut(s) 384
AciI CCGC 1 cut(s) 724
AclWI GGATC 5 cut(s) 63, 170, 401, 454, 1201
AcoI YGGCCR 2 cut(s) 9, 140
AcsI RAATTY 1 cut(s) 1493
AcuI CTGAAG 3 cut(s) 877, 1032, 1416
AdeI CACNNNGTG 1 cut(s) 866
AfaI GTAC 4 cut(s) 470, 1055, 1297, 1544
AfiI CCNNNNNNNGG 3 cut(s) 443, 524, 1517
AflIII ACRYGT 1 cut(s) 84
AjnI CCWGG 4 cut(s) 319, 976, 1252, 1276
AleI CACNNNNGTG 2 cut(s) 260, 783
AloI GAACNNNNNNTCC 2 cut(s) 414, 446
Alw21I GWGCWC 1 cut(s) 620
AlwI GGATC 5 cut(s) 63, 170, 401, 454, 1201
AoxI GGCC 3 cut(s) 9, 140, 668
ApeKI GCWGC 1 cut(s) 797
ApoI RAATTY 1 cut(s) 1493
Asp700I GAANNNNTTC 4 cut(s) 28, 237, 1221, 1421
AspLEI GCGC 3 cut(s) 384, 386, 1479
AspS9I GGNCC 2 cut(s) 869, 992
AsuHPI GGTGA 2 cut(s) 280, 807
AsuII TTCGAA 1 cut(s) 22
AsuNHI GCTAGC 1 cut(s) 763
AvaII GGWCC 2 cut(s) 869, 992
BalI TGGCCA 2 cut(s) 11, 142
BanI GGYRCC 1 cut(s) 323
BauI CACGAG 1 cut(s) 129
BbsI GAAGAC 5 cut(s) 81, 957, 964, 974, 1338
Bbv12I GWGCWC 1 cut(s) 620
BbvI GCAGC 1 cut(s) 784
BccI CCATC 5 cut(s) 250, 637, 1161, 1184, 1460
BciT130I CCWGG 4 cut(s) 321, 978, 1254, 1278
BfaI CTAG 6 cut(s) 213, 705, 764, 1019, 1163, 1197
BfmI CTRYAG 1 cut(s) 601
BglII AGATCT 1 cut(s) 125
BisI GCNGC 1 cut(s) 798
BlpI GCTNAGC 1 cut(s) 1500
BlsI GCNGC 1 cut(s) 799
Bme1390I CCNGG 4 cut(s) 321, 978, 1254, 1278
Bme18I GGWCC 2 cut(s) 869, 992
BmgT120I GGNCC 2 cut(s) 869, 992
BmiI GGNNCC 5 cut(s) 325, 871, 880, 1275, 1408
BmrFI CCNGG 4 cut(s) 321, 978, 1254, 1278
BmrI ACTGGG 1 cut(s) 93
BmsI GCATC 3 cut(s) 261, 735, 1241
BmtI GCTAGC 1 cut(s) 767
BmuI ACTGGG 1 cut(s) 93
BpiI GAAGAC 5 cut(s) 81, 957, 964, 974, 1338
BpmI CTGGAG 1 cut(s) 1275
Bpu1102I GCTNAGC 1 cut(s) 1500
Bpu14I TTCGAA 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 1386
BsaJI CCNNGG 5 cut(s) 12, 874, 976, 1179, 1269
BsaWI WCCGGW 1 cut(s) 399
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 3 cut(s) 443, 524, 1517
Bse1I ACTGG 2 cut(s) 99, 625
Bse3DI GCAATG 2 cut(s) 1227, 1440
BseBI CCWGG 4 cut(s) 321, 978, 1254, 1278
BseDI CCNNGG 5 cut(s) 12, 874, 976, 1179, 1269
BseGI GGATG 2 cut(s) 1232, 1452
BseLI CCNNNNNNNGG 3 cut(s) 443, 524, 1517
BseMI GCAATG 2 cut(s) 1227, 1440
BseMII CTCAG 4 cut(s) 171, 237, 1070, 1115
BseNI ACTGG 2 cut(s) 99, 625
BsePI GCGCGC 1 cut(s) 382
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 784
Bsh1236I CGCG 1 cut(s) 384
BshFI GGCC 3 cut(s) 11, 142, 670
BshNI GGYRCC 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 620
BsiSI CCGG 1 cut(s) 400
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 3 cut(s) 443, 524, 1517
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 3 cut(s) 11, 142, 670
Bsp119I TTCGAA 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 620
Bsp1407I TGTACA 1 cut(s) 468
Bsp143I GATC 9 cut(s) 68, 125, 175, 406, 446, 511, 637, 957, 1193
Bsp1720I GCTNAGC 1 cut(s) 1500
Bsp19I CCATGG 2 cut(s) 12, 1269
BspACI CCGC 1 cut(s) 724
BspANI GGCC 3 cut(s) 11, 142, 670
BspCNI CTCAG 4 cut(s) 172, 238, 1071, 1114
BspFNI CGCG 1 cut(s) 384
BspHI TCATGA 2 cut(s) 291, 490
BspLI GGNNCC 5 cut(s) 325, 871, 880, 1275, 1408
BspOI GCTAGC 1 cut(s) 767
BspPI GGATC 5 cut(s) 63, 170, 401, 454, 1201
BspQI GCTCTTC 1 cut(s) 24
BspT104I TTCGAA 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 323
BsrDI GCAATG 2 cut(s) 1227, 1440
BsrGI TGTACA 1 cut(s) 468
BsrI ACTGG 2 cut(s) 99, 625
BssECI CCNNGG 5 cut(s) 12, 874, 976, 1179, 1269
BssHII GCGCGC 1 cut(s) 382
BssMI GATC 9 cut(s) 68, 125, 175, 406, 446, 511, 637, 957, 1193
BssSI CACGAG 1 cut(s) 129
BssT1I CCWWGG 3 cut(s) 12, 1179, 1269
Bst2BI CACGAG 1 cut(s) 129
Bst2UI CCWGG 4 cut(s) 321, 978, 1254, 1278
Bst4CI ACNGT 4 cut(s) 308, 819, 1088, 1249
Bst6I CTCTTC 2 cut(s) 24, 1450
BstAPI GCANNNNNTGC 1 cut(s) 1097
BstAUI TGTACA 1 cut(s) 468
BstBI TTCGAA 1 cut(s) 22
BstC8I GCNNGC 4 cut(s) 276, 384, 724, 765
BstDEI CTNAG 5 cut(s) 180, 246, 1079, 1101, 1500
BstDSI CCRYGG 3 cut(s) 12, 874, 1269
BstF5I GGATG 2 cut(s) 1232, 1452
BstFNI CGCG 1 cut(s) 384
BstHHI GCGC 3 cut(s) 384, 386, 1479
BstKTI GATC 9 cut(s) 71, 128, 178, 409, 449, 514, 640, 960, 1196
BstMBI GATC 9 cut(s) 68, 125, 175, 406, 446, 511, 637, 957, 1193
BstMWI GCNNNNNNNGC 6 cut(s) 148, 381, 392, 773, 1097, 1346
BstNI CCWGG 4 cut(s) 321, 978, 1254, 1278
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 4 cut(s) 319, 976, 1252, 1276
BstSFI CTRYAG 1 cut(s) 601
BstUI CGCG 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 784
BstV2I GAAGAC 5 cut(s) 81, 957, 964, 974, 1338
BstX2I RGATCY 4 cut(s) 125, 406, 446, 1193
BstYI RGATCY 4 cut(s) 125, 406, 446, 1193
BsuRI GGCC 3 cut(s) 11, 142, 670
BtgI CCRYGG 3 cut(s) 12, 874, 1269
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 1232, 1452
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 7 cut(s) 106, 313, 471, 618, 790, 1093, 1245
Cac8I GCNNGC 4 cut(s) 276, 384, 724, 765
CciI TCATGA 2 cut(s) 291, 490
CfoI GCGC 3 cut(s) 384, 386, 1479
Cfr13I GGNCC 2 cut(s) 869, 992
Csp6I GTAC 4 cut(s) 469, 1054, 1296, 1543
CviQI GTAC 4 cut(s) 469, 1054, 1296, 1543
DdeI CTNAG 5 cut(s) 180, 246, 1079, 1101, 1500
DpnI GATC 9 cut(s) 70, 127, 177, 408, 448, 513, 639, 959, 1195
DpnII GATC 9 cut(s) 68, 125, 175, 406, 446, 511, 637, 957, 1193
DraIII CACNNNGTG 1 cut(s) 866
EaeI YGGCCR 2 cut(s) 9, 140
Eam1104I CTCTTC 2 cut(s) 24, 1450
EarI CTCTTC 2 cut(s) 24, 1450
Eco130I CCWWGG 3 cut(s) 12, 1179, 1269
Eco32I GATATC 1 cut(s) 567
Eco47I GGWCC 2 cut(s) 869, 992
Eco57I CTGAAG 3 cut(s) 877, 1032, 1416
EcoRI GAATTC 1 cut(s) 1493
EcoRII CCWGG 4 cut(s) 319, 976, 1252, 1276
EcoRV GATATC 1 cut(s) 567
EcoT14I CCWWGG 3 cut(s) 12, 1179, 1269
ErhI CCWWGG 3 cut(s) 12, 1179, 1269
FalI AAGNNNNNCTT 2 cut(s) 16, 48
FaqI GGGAC 1 cut(s) 240
FauI CCCGC 1 cut(s) 731
Fnu4HI GCNGC 1 cut(s) 798
FokI GGATG 2 cut(s) 1219, 1439
Fsp4HI GCNGC 1 cut(s) 798
FspBI CTAG 6 cut(s) 213, 705, 764, 1019, 1163, 1197
GlaI GCGC 3 cut(s) 383, 385, 1478
GluI GCNGC 1 cut(s) 798
GsuI CTGGAG 1 cut(s) 1275
HaeIII GGCC 3 cut(s) 11, 142, 670
HapII CCGG 1 cut(s) 400
HhaI GCGC 3 cut(s) 384, 386, 1479
Hin6I GCGC 3 cut(s) 382, 384, 1477
HinP1I GCGC 3 cut(s) 382, 384, 1477
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 5 cut(s) 498, 1105, 1168, 1284, 1439
HpaII CCGG 1 cut(s) 400
HphI GGTGA 2 cut(s) 280, 807
Hpy166II GTNNAC 5 cut(s) 469, 471, 869, 995, 1225
Hpy188III TCNNGA 9 cut(s) 179, 292, 389, 410, 444, 491, 1078, 1197, 1314
Hpy8I GTNNAC 5 cut(s) 469, 471, 869, 995, 1225
HpyAV CCTTC 6 cut(s) 18, 112, 217, 305, 822, 1411
HpyCH4III ACNGT 4 cut(s) 308, 819, 1088, 1249
HpyCH4V TGCA 5 cut(s) 274, 476, 692, 1091, 1232
HpyF10VI GCNNNNNNNGC 6 cut(s) 148, 381, 392, 773, 1097, 1346
HpyF3I CTNAG 5 cut(s) 180, 246, 1079, 1101, 1500
HspAI GCGC 3 cut(s) 382, 384, 1477
Kzo9I GATC 9 cut(s) 68, 125, 175, 406, 446, 511, 637, 957, 1193
LguI GCTCTTC 1 cut(s) 24
LmnI GCTCC 1 cut(s) 878
Lsp1109I GCAGC 1 cut(s) 784
LweI GCATC 3 cut(s) 261, 735, 1241
MaeI CTAG 6 cut(s) 213, 705, 764, 1019, 1163, 1197
MaeIII GTNAC 7 cut(s) 80, 133, 740, 838, 858, 1082, 1369
MalI GATC 9 cut(s) 70, 127, 177, 408, 448, 513, 639, 959, 1195
MboI GATC 9 cut(s) 68, 125, 175, 406, 446, 511, 637, 957, 1193
MfeI CAATTG 2 cut(s) 39, 1515
MflI RGATCY 4 cut(s) 125, 406, 446, 1193
MhlI GDGCHC 1 cut(s) 620
MlsI TGGCCA 2 cut(s) 11, 142
MluCI AATT 6 cut(s) 39, 674, 912, 1185, 1493, 1515
MluNI TGGCCA 2 cut(s) 11, 142
MlyI GAGTC 1 cut(s) 1099
MmeI TCCRAC 2 cut(s) 1194, 1260
Mox20I TGGCCA 2 cut(s) 11, 142
MroXI GAANNNNTTC 4 cut(s) 28, 237, 1221, 1421
MscI TGGCCA 2 cut(s) 11, 142
MseI TTAA 4 cut(s) 153, 482, 906, 915
MslI CAYNNNNRTG 2 cut(s) 260, 783
Msp20I TGGCCA 2 cut(s) 11, 142
MspA1I CMGCKG 1 cut(s) 572
MspI CCGG 1 cut(s) 400
MspR9I CCNGG 4 cut(s) 321, 978, 1254, 1278
MunI CAATTG 2 cut(s) 39, 1515
MvaI CCWGG 4 cut(s) 321, 978, 1254, 1278
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 6 cut(s) 148, 381, 392, 773, 1097, 1346
NcoI CCATGG 2 cut(s) 12, 1269
NdeII GATC 9 cut(s) 68, 125, 175, 406, 446, 511, 637, 957, 1193
NheI GCTAGC 1 cut(s) 763
NlaIV GGNNCC 5 cut(s) 325, 871, 880, 1275, 1408
NmuCI GTSAC 3 cut(s) 133, 858, 1369
NspI RCATGY 1 cut(s) 88
NspV TTCGAA 1 cut(s) 22
OliI CACNNNNGTG 2 cut(s) 260, 783
PagI TCATGA 2 cut(s) 291, 490
PauI GCGCGC 1 cut(s) 382
PciI ACATGT 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 24
PcsI WCGNNNNNNNCGW 1 cut(s) 871
PdmI GAANNNNTTC 4 cut(s) 28, 237, 1221, 1421
PfeI GAWTC 4 cut(s) 498, 1168, 1284, 1439
PflMI CCANNNNNTGG 1 cut(s) 1517
PfoI TCCNGGA 1 cut(s) 1252
PkrI GCNGC 1 cut(s) 799
PleI GAGTC 1 cut(s) 1099
PpsI GAGTC 1 cut(s) 1099
PscI ACATGT 1 cut(s) 84
Psp6I CCWGG 4 cut(s) 319, 976, 1252, 1276
PspGI CCWGG 4 cut(s) 319, 976, 1252, 1276
PspN4I GGNNCC 5 cut(s) 325, 871, 880, 1275, 1408
PspPI GGNCC 2 cut(s) 869, 992
PsuI RGATCY 4 cut(s) 125, 406, 446, 1193
PteI GCGCGC 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 4 cut(s) 470, 1055, 1297, 1544
RsaNI GTAC 4 cut(s) 469, 1054, 1296, 1543
RseI CAYNNNNRTG 2 cut(s) 260, 783
SapI GCTCTTC 1 cut(s) 24
SaqAI TTAA 4 cut(s) 153, 482, 906, 915
SatI GCNGC 1 cut(s) 798
Sau3AI GATC 9 cut(s) 68, 125, 175, 406, 446, 511, 637, 957, 1193
Sau96I GGNCC 2 cut(s) 869, 992
SchI GAGTC 1 cut(s) 1099
ScrFI CCNGG 4 cut(s) 321, 978, 1254, 1278
SduI GDGCHC 1 cut(s) 620
SfaNI GCATC 3 cut(s) 261, 735, 1241
SfcI CTRYAG 1 cut(s) 601
SfuI TTCGAA 1 cut(s) 22
SinI GGWCC 2 cut(s) 869, 992
SmiMI CAYNNNNRTG 2 cut(s) 260, 783
SmlI CTYRAG 1 cut(s) 1401
SmoI CTYRAG 1 cut(s) 1401
Sse9I AATT 6 cut(s) 39, 674, 912, 1185, 1493, 1515
SsiI CCGC 1 cut(s) 724
SspMI CTAG 6 cut(s) 213, 705, 764, 1019, 1163, 1197
StyD4I CCNGG 4 cut(s) 319, 976, 1252, 1276
StyI CCWWGG 3 cut(s) 12, 1179, 1269
TaaI ACNGT 4 cut(s) 308, 819, 1088, 1249
TaqI TCGA 6 cut(s) 22, 67, 630, 822, 1359, 1488
TasI AATT 6 cut(s) 39, 674, 912, 1185, 1493, 1515
TatI WGTACW 3 cut(s) 468, 1053, 1542
TfiI GAWTC 4 cut(s) 498, 1168, 1284, 1439
Tru1I TTAA 4 cut(s) 153, 482, 906, 915
Tru9I TTAA 4 cut(s) 153, 482, 906, 915
TscAI CASTG 7 cut(s) 106, 313, 478, 625, 790, 1093, 1252
TseFI GTSAC 3 cut(s) 133, 858, 1369
TseI GCWGC 1 cut(s) 797
Tsp45I GTSAC 3 cut(s) 133, 858, 1369
TspDTI ATGAA 5 cut(s) 66, 507, 1140, 1497, 1553
TspRI CASTG 7 cut(s) 106, 313, 478, 625, 790, 1093, 1252
Van91I CCANNNNNTGG 1 cut(s) 1517
VpaK11BI GGWCC 2 cut(s) 869, 992
XapI RAATTY 1 cut(s) 1493
XbaI TCTAGA 1 cut(s) 1196
XceI RCATGY 1 cut(s) 88
XmnI GAANNNNTTC 4 cut(s) 28, 237, 1221, 1421
XspI CTAG 6 cut(s) 213, 705, 764, 1019, 1163, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.