Rmu_co8379585.1_g000001

Serine hydroxymethyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8379585.1
OG0007608
Physical Location & Seq
Forward (+)
1 .. 1113
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8379585.1_g000001.1.cds

Sequence Viewer

Length: 468 bp
ttggagaaaagtgccactctcttcaggccaaaattaatagttgctggtgctagtgcttatgcacgtttgtatgattatgcacgcattcgcaaggtatgcgacaaacaaaaagctatcctgttggcagatatggcacatatcagtgggttggttgcagctggtgtcatcccatctccttttgagtatgcagatgtagtgaccaccacaacacacaagtcacttcgtggccctcgcggtgccatgattttcttcaggaagggtctaaaagagactaacaaacaagggaaagaggtgttttatgactacgaagacaaaatcaatcaagctgtctttcctgggcttcaaggtggtccacacaaccacaccatcactggtttggcagttgcactgaaacaggctactactccagagtacaaagcctatcaagagcaagttctcagtaattgctcaagatttgcacaggtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001505 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004372 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005840 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006563 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007623 GO:0008150 GO:0008152 GO:0008187 GO:0008219 GO:0008266 GO:0009069 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009626 GO:0009628 GO:0009853 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0012501 GO:0016020 GO:0016740 GO:0016741 GO:0016742 GO:0017144 GO:0019752 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033554 GO:0034050 GO:0042133 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0048511 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901605 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523
Pfam Domains
Protein Families
SHMT

Protein Analysis

155

Amino Acids

17.11

Weight (kDa)

9.54

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccII CGCG 1 cut(s) 234
AciI CCGC 1 cut(s) 234
AcuI CTGAAG 2 cut(s) 7, 235
AdeI CACNNNGTG 1 cut(s) 224
AfaI GTAC 1 cut(s) 413
AgsI TTSAA 1 cut(s) 344
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 3 cut(s) 113, 158, 326
AluI AGCT 3 cut(s) 113, 158, 326
Alw26I GTCTC 1 cut(s) 263
AoxI GGCC 2 cut(s) 26, 226
ApeKI GCWGC 1 cut(s) 155
AseI ATTAAT 1 cut(s) 35
AspS9I GGNCC 2 cut(s) 227, 350
AvaII GGWCC 1 cut(s) 350
BanI GGYRCC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 167
BccI CCATC 2 cut(s) 178, 374
BciT130I CCWGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 1 cut(s) 51
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 2 cut(s) 227, 350
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 433
BsaJI CCNNGG 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 376
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 451
BseNI ACTGG 1 cut(s) 376
BseXI GCAGC 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 2 cut(s) 28, 228
BshNI GGYRCC 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 263
BsmI GAATGC 1 cut(s) 84
BsnI GGCC 2 cut(s) 28, 228
BspACI CCGC 1 cut(s) 234
BspANI GGCC 2 cut(s) 28, 228
BspCNI CTCAG 1 cut(s) 450
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 238
BspT107I GGYRCC 1 cut(s) 236
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 335
Bst2UI CCWGG 1 cut(s) 336
Bst6I CTCTTC 1 cut(s) 26
BstAPI GCANNNNNTGC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 437
BstF5I GGATG 1 cut(s) 165
BstFNI CGCG 1 cut(s) 234
BstMAI GTCTC 1 cut(s) 263
BstMWI GCNNNNNNNGC 2 cut(s) 96, 131
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 334
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 315
BsuRI GGCC 2 cut(s) 28, 228
BtsCI GGATG 1 cut(s) 165
BtsIMutI CAGTG 3 cut(s) 148, 369, 386
Cac8I GCNNGC 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 227, 350
Csp6I GTAC 1 cut(s) 412
CviAII CATG 1 cut(s) 241
CviJI RGCY 8 cut(s) 28, 113, 158, 228, 326, 340, 398, 419
CviKI_1 RGCY 8 cut(s) 28, 113, 158, 228, 326, 340, 398, 419
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 1 cut(s) 437
DraIII CACNNNGTG 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 350
Eco57I CTGAAG 2 cut(s) 7, 235
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 1 cut(s) 244
FatI CATG 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 51
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 390
HaeIII GGCC 2 cut(s) 28, 228
Hin1II CATG 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 353
Hpy188III TCNNGA 4 cut(s) 253, 407, 425, 450
Hpy8I GTNNAC 1 cut(s) 353
HpyAV CCTTC 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 6 cut(s) 62, 80, 155, 188, 386, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 131
HpyF3I CTNAG 1 cut(s) 437
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 1 cut(s) 244
Lsp1109I GCAGC 1 cut(s) 167
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 2 cut(s) 196, 216
MboII GAAGA 3 cut(s) 13, 241, 320
MluCI AATT 2 cut(s) 32, 442
MnlI CCTC 2 cut(s) 240, 283
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 84
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 96, 131
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 2 cut(s) 196, 216
PctI GAATGC 1 cut(s) 84
PkrI GCNGC 1 cut(s) 157
PshBI ATTAAT 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 2 cut(s) 227, 350
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 1 cut(s) 156
Sau96I GGNCC 2 cut(s) 227, 350
ScrFI CCNGG 1 cut(s) 336
SetI ASST 8 cut(s) 67, 96, 115, 160, 294, 328, 349, 465
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
Sse9I AATT 2 cut(s) 32, 442
SsiI CCGC 1 cut(s) 234
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 334
TaiI ACGT 1 cut(s) 67
TasI AATT 2 cut(s) 32, 442
TatI WGTACW 1 cut(s) 411
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 3 cut(s) 148, 376, 393
TseFI GTSAC 2 cut(s) 196, 216
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 2 cut(s) 196, 216
TspRI CASTG 3 cut(s) 148, 376, 393
VpaK11BI GGWCC 1 cut(s) 350
VspI ATTAAT 1 cut(s) 35
XcmI CCANNNNNNNNNTGG 2 cut(s) 368, 373
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.