Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8424867.1

Orthogroup ID

OG0007608

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1313

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8424867.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 479 bp

agaacttcacatcagtctctgtgatgcaagcagttgggtcagtcatgaccaacaaatacagtgaagggtatcctggggcaagatactatggaggaaatgagttcattgacatggcagaaaccttgtgccagaaacgtgctttggaagcttttcggttggacccagcaaaatggggagtcaacgtgcagcctttgtcaggatctccagctaattttcatgtttacactgcattgttaaaacctcatgatagaatcatggctcttgatcttcctcatggtggtcatctttctcatggttatcagactgacaccaaaaagatatcagctgtgtcaatcttttttgagacaatgccatacagattggatgagagcactggttacattgactacgaccaggtagcttggagatttgtaattaaaatgattcttgcattgttacattgttgtcttgtgtcgtttagtcaacataatgcttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004372 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005840 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006563 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007623 GO:0008150 GO:0008152 GO:0008187 GO:0008219 GO:0008266 GO:0009069 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009626 GO:0009628 GO:0009853 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0012501 GO:0016020 GO:0016740 GO:0016741 GO:0016742 GO:0017144 GO:0019752 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033554 GO:0034050 GO:0042133 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0048511 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901605 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523

Pfam Domains

Protein Families

SHMT

Protein Analysis

158

Amino Acids

17.73

Weight (kDa)

6.7

Isoelectric Point (pI)

25.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37930
fragaria_vesca	FvH4_1g19090 FvH4_1g19090 FvH4_1g19090 FvH4_1g19090 FvH4_1g19090
malus_domestica	MD01G1044100.v1.1 MD15G1307200.v1.1
prunus_persica	Prupe.6G209100_v2.0.a1 Prupe.6G209100_v2.0.a1
pyrus_communis	pycom01g07110 pycom15g27130
rosa_chinensis	RchiOBHm_Chr2g0110071
rosa_laevigata	RLG00000017784
rosa_multiflora	Rmu_co8379585.1_g000001 Rmu_co8424867.1_g000001 Rmu_sc0001870.1_g000018
rosa_roxburghii	Rroxscaffold_2G00133740
rosa_rugosa	Rorug02G0165400 Rorug02G0165500
rosa_samantha	Rh2AG217300 Rh2CG219500 Rh2DG223000
rosa_wichuraiana	Rw2G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	207
AfiI	CCNNNNNNNGG	2 cut(s)	196, 277
AjnI	CCWGG	2 cut(s)	72, 392
AjuI	GAANNNNNNNTTGG	2 cut(s)	124, 156
AluBI	AGCT	4 cut(s)	148, 208, 325, 400
AluI	AGCT	4 cut(s)	148, 208, 325, 400
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	2 cut(s)	21, 337
AlwI	GGATC	1 cut(s)	207
AlwNI	CAGNNNCTG	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	198
BciT130I	CCWGG	2 cut(s)	74, 394
BciVI	GTATCC	1 cut(s)	80
BcoDI	GTCTC	2 cut(s)	21, 337
BfuI	GTATCC	1 cut(s)	80
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
Bme1390I	CCNGG	2 cut(s)	74, 394
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	2 cut(s)	74, 394
BmsI	GCATC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 277
Bse1I	ACTGG	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	74, 394
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	196, 277
BseNI	ACTGG	1 cut(s)	378
BseXI	GCAGC	1 cut(s)	198
BseYI	CCCAGC	1 cut(s)	162
BsgI	GTGCAG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	373
BslI	CCNNNNNNNGG	2 cut(s)	196, 277
BsmAI	GTCTC	2 cut(s)	21, 337
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	2 cut(s)	199, 264
BspHI	TCATGA	2 cut(s)	44, 243
BspLI	GGNNCC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	2 cut(s)	199, 264
Bst2UI	CCWGG	2 cut(s)	74, 394
Bst4CI	ACNGT	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	29
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	369
BstKTI	GATC	2 cut(s)	202, 267
BstMAI	GTCTC	2 cut(s)	21, 337
BstMBI	GATC	2 cut(s)	199, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	2 cut(s)	74, 394
BstSCI	CCNGG	2 cut(s)	72, 392
BstV1I	GCAGC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	199
BstXI	CCANNNNNNTGG	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	369
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	3 cut(s)	66, 224, 371
Cac8I	GCNNGC	1 cut(s)	29
CaiI	CAGNNNCTG	1 cut(s)	19
CciI	TCATGA	2 cut(s)	44, 243
Cfr13I	GGNCC	1 cut(s)	159
CsiI	ACCWGGT	1 cut(s)	392
CviAII	CATG	7 cut(s)	45, 111, 217, 244, 255, 274, 292
CviJI	RGCY	6 cut(s)	148, 189, 208, 259, 325, 400
CviKI_1	RGCY	6 cut(s)	148, 189, 208, 259, 325, 400
DpnI	GATC	2 cut(s)	201, 266
DpnII	GATC	2 cut(s)	199, 264
Eco32I	GATATC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	159
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoRII	CCWGG	2 cut(s)	72, 392
EcoRV	GATATC	1 cut(s)	320
FaeI	CATG	7 cut(s)	48, 114, 220, 247, 258, 277, 295
FatI	CATG	7 cut(s)	44, 110, 216, 243, 254, 273, 291
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	187
GsaI	CCCAGC	1 cut(s)	166
GsuI	CTGGAG	1 cut(s)	188
Hin1II	CATG	7 cut(s)	48, 114, 220, 247, 258, 277, 295
HincII	GTYRAC	2 cut(s)	180, 463
HindII	GTYRAC	2 cut(s)	180, 463
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	3 cut(s)	176, 251, 423
Hpy166II	GTNNAC	3 cut(s)	180, 222, 463
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	4 cut(s)	45, 197, 244, 262
Hpy8I	GTNNAC	3 cut(s)	180, 222, 463
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	2 cut(s)	135, 182
HpyCH4V	TGCA	4 cut(s)	27, 186, 229, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpySE526I	ACGT	2 cut(s)	135, 182
Hsp92II	CATG	7 cut(s)	48, 114, 220, 247, 258, 277, 295
Kzo9I	GATC	2 cut(s)	199, 264
LpnPI	CCDG	9 cut(s)	59, 86, 142, 176, 182, 218, 359, 379, 406
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	1 cut(s)	14
MabI	ACCWGGT	1 cut(s)	392
MaeII	ACGT	2 cut(s)	135, 182
MaeIII	GTNAC	2 cut(s)	376, 434
MalI	GATC	2 cut(s)	201, 266
MboI	GATC	2 cut(s)	199, 264
MboII	GAAGA	1 cut(s)	259
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	2 cut(s)	210, 413
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	3 cut(s)	85, 251, 281
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	3 cut(s)	235, 416, 477
MslI	CAYNNNNRTG	1 cut(s)	109
MspA1I	CMGCKG	1 cut(s)	325
MspR9I	CCNGG	2 cut(s)	74, 394
MvaI	CCWGG	2 cut(s)	74, 394
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	2 cut(s)	199, 264
NlaIII	CATG	7 cut(s)	48, 114, 220, 247, 258, 277, 295
NlaIV	GGNNCC	1 cut(s)	161
PagI	TCATGA	2 cut(s)	44, 243
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	251, 423
PkrI	GCNGC	1 cut(s)	188
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	72, 392
PspFI	CCCAGC	1 cut(s)	162
PspGI	CCWGG	2 cut(s)	72, 392
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	109
SaqAI	TTAA	3 cut(s)	235, 416, 477
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	2 cut(s)	199, 264
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	74, 394
SduI	GDGCHC	1 cut(s)	373
SetI	ASST	9 cut(s)	124, 138, 150, 185, 210, 243, 327, 398, 402
SexAI	ACCWGGT	1 cut(s)	392
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	109
Sse9I	AATT	2 cut(s)	210, 413
StyD4I	CCNGG	2 cut(s)	72, 392
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	2 cut(s)	138, 185
TasI	AATT	2 cut(s)	210, 413
TfiI	GAWTC	2 cut(s)	251, 423
Tru1I	TTAA	3 cut(s)	235, 416, 477
Tru9I	TTAA	3 cut(s)	235, 416, 477
TscAI	CASTG	3 cut(s)	66, 231, 378
TseI	GCWGC	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	93, 205
TspRI	CASTG	3 cut(s)	66, 231, 378
VpaK11BI	GGWCC	1 cut(s)	159
XagI	CCTNNNNNAGG	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.