Rorug02G0165400

Serine hydroxymethyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004392
Physical Location & Seq
Reverse (-)
14742041 .. 14745836
3796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0165400.1

Sequence Viewer

Length: 597 bp
ATGAACTGCGAAGTTTGCCAACTCAAAGAATTGGAAGTCGAGCACTTTGAGATACGTGAAGTTCTGCGCTGCATACTTCACACAATTGTGTTCAATCGAGCTTTAGGTCTTGTGCGGCCGAAAGATGTTGATTTGGAACTTTTTGAAATTACATATGTGCAATGTGGAGATCTGGAACTTGAAAAGAAAATAGATGAGAAGATTGAGCAATTCATTAGTTGGGTAGAGAAACACCCGAACAAGAAAAGTCAGGTCTGCTTGTCTTTCTTTGAAGTAAAAAACAAACAGGCATCTTGGTTCACTAACAAAACAGAGCGGCTATATTGGGAACAGTGGTATATCAATTTGAATGTGGCCCAAAACCCAAAAGCACATTCTACCAAATCTCATCACTCCAAAGTTGTAGTTGATCCAGGAGAAAGTGCATCAGAGGAGAGGGTTGCTCGCAGAGCTGCACTTGAAGCAACTCTTCATGAAGTTTTGTTTCAAATAGTGAAATTTGTGAATGAGAAGAAAGATCACGTTCCCCCCATACCGAATCTTGAGGGTGTAGTCTCTTTCCCGTATGAAATAACTATCCCAAGGAAGTTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001505 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004372 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005840 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006563 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007623 GO:0008150 GO:0008152 GO:0008187 GO:0008219 GO:0008266 GO:0009069 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009626 GO:0009628 GO:0009853 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0012501 GO:0016020 GO:0016740 GO:0016741 GO:0016742 GO:0017144 GO:0019752 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033554 GO:0034050 GO:0042133 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0048511 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901605 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523
Pfam Domains
Protein Families
SHMT

Protein Analysis

198

Amino Acids

23.24

Weight (kDa)

6.26

Isoelectric Point (pI)

25.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG101 PF07855 10 - 180 3.8e-54 Autophagy-related protein 101
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 316
AciI CCGC 2 cut(s) 115, 316
AclWI GGATC 1 cut(s) 404
AcoI YGGCCR 1 cut(s) 116
AcsI RAATTY 1 cut(s) 497
AgsI TTSAA 7 cut(s) 94, 146, 182, 272, 349, 461, 488
AjnI CCWGG 1 cut(s) 412
AjuI GAANNNNNNNTTGG 2 cut(s) 358, 390
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 2 cut(s) 101, 452
AluI AGCT 2 cut(s) 101, 452
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 559
AlwI GGATC 1 cut(s) 404
AoxI GGCC 2 cut(s) 116, 354
ApeKI GCWGC 2 cut(s) 69, 452
ApoI RAATTY 1 cut(s) 497
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 355
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 56, 439
BciT130I CCWGG 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 559
BglII AGATCT 1 cut(s) 169
BisI GCNGC 4 cut(s) 70, 116, 317, 453
BlsI GCNGC 4 cut(s) 71, 117, 318, 454
Bme1390I CCNGG 1 cut(s) 414
BmgT120I GGNCC 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 2 cut(s) 299, 434
BplI GAGNNNNNCTC 2 cut(s) 427, 459
BpuEI CTTGAG 1 cut(s) 563
BsaAI YACGTR 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 581
Bse3DI GCAATG 1 cut(s) 167
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 581
BseMI GCAATG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 446
BseX3I CGGCCG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 56, 439
BsgI GTGCAG 1 cut(s) 438
Bsh1285I CGRYCG 1 cut(s) 119
BshFI GGCC 2 cut(s) 118, 356
BsiEI CGRYCG 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 45
BsmAI GTCTC 1 cut(s) 559
BsnI GGCC 2 cut(s) 118, 356
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 3 cut(s) 169, 409, 517
BspACI CCGC 2 cut(s) 115, 316
BspANI GGCC 2 cut(s) 118, 356
BspHI TCATGA 1 cut(s) 472
BspPI GGATC 1 cut(s) 404
BsrBI CCGCTC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 581
BssMI GATC 3 cut(s) 169, 409, 517
BssT1I CCWWGG 1 cut(s) 581
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 1 cut(s) 333
Bst6I CTCTTC 1 cut(s) 474
BstBAI YACGTR 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 445
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 3 cut(s) 172, 412, 520
BstMAI GTCTC 1 cut(s) 559
BstMBI GATC 3 cut(s) 169, 409, 517
BstMCI CGRYCG 1 cut(s) 119
BstMWI GCNNNNNNNGC 3 cut(s) 15, 449, 461
BstNI CCWGG 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 412
BstV1I GCAGC 2 cut(s) 56, 439
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BstZI CGGCCG 1 cut(s) 116
BsuRI GGCC 2 cut(s) 118, 356
BtsIMutI CAGTG 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 445
CciI TCATGA 1 cut(s) 472
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 355
CviAII CATG 1 cut(s) 473
CviJI RGCY 5 cut(s) 101, 118, 319, 356, 452
CviKI_1 RGCY 5 cut(s) 101, 118, 319, 356, 452
DpnI GATC 3 cut(s) 171, 411, 519
DpnII GATC 3 cut(s) 169, 409, 517
EaeI YGGCCR 1 cut(s) 116
EagI CGGCCG 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
EclXI CGGCCG 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 581
Eco52I CGGCCG 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 581
ErhI CCWWGG 1 cut(s) 581
FaeI CATG 1 cut(s) 476
FaiI YATR 8 cut(s) 74, 154, 156, 322, 339, 474, 533, 567
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FatI CATG 1 cut(s) 472
FauNDI CATATG 1 cut(s) 154
Fnu4HI GCNGC 4 cut(s) 70, 116, 317, 453
Fsp4HI GCNGC 4 cut(s) 70, 116, 317, 453
GlaI GCGC 1 cut(s) 68
GluI GCNGC 4 cut(s) 70, 116, 317, 453
HaeIII GGCC 2 cut(s) 118, 356
HhaI GCGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 476
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HinfI GANTC 1 cut(s) 538
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 2 cut(s) 430, 596
Hpy188III TCNNGA 3 cut(s) 173, 473, 542
Hpy8I GTNNAC 1 cut(s) 300
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4IV ACGT 2 cut(s) 55, 522
HpyCH4V TGCA 4 cut(s) 72, 160, 425, 455
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 449, 461
HpySE526I ACGT 2 cut(s) 55, 522
Hsp92II CATG 1 cut(s) 476
HspAI GCGC 1 cut(s) 67
Kzo9I GATC 3 cut(s) 169, 409, 517
LpnPI CCDG 5 cut(s) 158, 236, 272, 399, 426
Lsp1109I GCAGC 2 cut(s) 56, 439
LweI GCATC 2 cut(s) 299, 434
MaeII ACGT 2 cut(s) 55, 522
MalI GATC 3 cut(s) 171, 411, 519
MbiI CCGCTC 1 cut(s) 316
MboI GATC 3 cut(s) 169, 409, 517
MboII GAAGA 3 cut(s) 211, 461, 523
MfeI CAATTG 1 cut(s) 84
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 6 cut(s) 29, 84, 147, 209, 343, 497
MnlI CCTC 3 cut(s) 424, 429, 538
MslI CAYNNNNRTG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 414
MunI CAATTG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 414
MwoI GCNNNNNNNGC 3 cut(s) 15, 449, 461
NdeI CATATG 1 cut(s) 154
NdeII GATC 3 cut(s) 169, 409, 517
NlaIII CATG 1 cut(s) 476
OliI CACNNNNGTG 1 cut(s) 86
PagI TCATGA 1 cut(s) 472
PfeI GAWTC 1 cut(s) 538
PfoI TCCNGGA 1 cut(s) 412
PkrI GCNGC 4 cut(s) 71, 117, 318, 454
Ppu21I YACGTR 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspPI GGNCC 1 cut(s) 355
PsuI RGATCY 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 86
SatI GCNGC 4 cut(s) 70, 116, 317, 453
Sau3AI GATC 3 cut(s) 169, 409, 517
Sau96I GGNCC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 414
SduI GDGCHC 1 cut(s) 45
SetI ASST 6 cut(s) 58, 103, 109, 255, 454, 525
SfaNI GCATC 2 cut(s) 299, 434
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 6 cut(s) 29, 84, 147, 209, 343, 497
SsiI CCGC 2 cut(s) 115, 316
StyD4I CCNGG 1 cut(s) 412
StyI CCWWGG 1 cut(s) 581
TaaI ACNGT 1 cut(s) 333
TaiI ACGT 2 cut(s) 58, 525
TaqI TCGA 2 cut(s) 39, 97
TasI AATT 6 cut(s) 29, 84, 147, 209, 343, 497
TauI GCSGC 2 cut(s) 118, 319
TfiI GAWTC 1 cut(s) 538
TscAI CASTG 1 cut(s) 338
TseI GCWGC 2 cut(s) 69, 452
TspDTI ATGAA 5 cut(s) 17, 202, 461, 489, 582
TspRI CASTG 1 cut(s) 338
XapI RAATTY 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.