Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004392

Physical Location & Seq

Genomic Coordinates Reverse (-)

21671474 .. 21679123

Gene Structure 7650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG219400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2220 bp

ATGAAGCACGCTCCTCCCTTAGCCTTGGGCTTGCAAATTCCAAAGAGAGCCCTATTGGCCTCGCTCCTTATACTCAACATGCTCATGGCAACTCGCGTCATTCTCTCCCGCTCAGTCTCCCCACTCCTCCTCAAGCGAGCTCCTTATCCCCATTTTACCCCTAAACGCTTACCCAAATCCCATCCCTGTCCCCTCTGGTCGTCTTCCTTCTCCTTCTGCCTCACTCTCCTCCCTAAACCCACCCCCACATCCCCTCCCTTCAACTCCCGACGACCTCGCTCTTCCCTCTCAATGGCCGCCTCTGCTGCCGTCGACGAATCTCTCTCCTCCAATCCTCTCCTCCGGGACTTCGACTTCCCTCCCTTCGACGTCGTTGACGCCTCGCACGTGCGACCTGGAATTCGAGCCCTATTGAAGAAGCTCGAGTCTGATTTGGAGGAGTTGGAGCGCACGGTGGAGCCTAACTGGCCGAAGCTGGTGGTGCCGTTGGAGAAGATCGTTGACCGGTTGACTGTGGTTTGGGGAGTCGTCAACCACCTCAAAGCTGTTAAGGACTCGTCGGAGCTTCGTGCTGCTATTGAAGAAGTGCAACCGGAGAAAGTGAAGTTTTATCTTAGGTTGGGACAAAGCAAGCCGATTTACAATGCGTTTAAAGCAATTCAAGACTCTCCTGATTGGAAGACATTGAGTGATGCTCAGAAACGTATAGTTGAAAACCAAATAAAGGAGGCAGTTCTTAGTGGAGTTGCCCTTGAGGATGATAAAAGAGAGGCTTTTAACAAAATTGAACAGGAACTAGAAAGACTGTCTCAAAAATTTGGGGAGAATGTTCTGGATGCCACAAAGAAATTTGAAAAGTTAATCACCGATAAGAAAGAAATTGATGGATTGCCAGCTACTGCTCTAGGATTGGCTGCACAAACAGCAGTGTCAAAGGGGCATGAAAATGCGACTGCTGAGAATGGGCCTTGGGTATTTACATTAGACGGTCCAAGTTTTCTCTCTGTTATGCAACATGCTCGAAACCGGTCTTTGCGTGAGGAAATATACCGTGCTTATGTAACTCGTGCATCTAGTGGAGAGCTGGATAATACTGCAATTATTGACTCAATCTTGAAGCTTAGGTTGGAAAAGGCGAAGCTTCTGAATTACAACAACTATGCTGAGGTAAGCATGGCAACCAAAATGGCTACTGTTGAAAAAGCAGAAGAGCTTCTAGAGAAACTTCGAAGTGCTTCTTGGAAGGCTGGAGTTCAAGATATGGAAGACCTTAAGAATTTCTGCAAAAGCCAAGATGCTCCAGAAGCTGATGATTTGAACCACTGGGACATTAGCTTTTGGAGTGAGAGGCTTCGGGAGTCCAAATTTGATATCAACGAGGAAGAATTGCGCCCCTATTTCTCCTTGCCAAAGGTTATGGATGGCCTGTTTAGCCTAGCGAACAAGATTTTTGGAATTGACATTGAACCAGCCGATGGTTTAGCTCCGGTTTGGAACAATGATGTTAGATTCTATCGTGTCAAAGATTCTTTTGGGGATCCTATTGCATATTTTTACTTCGATCCCTATACTCGTCCATCTGAGAAAAGGGGAGGTGCGTGGATGGATGAAGTACTTGCTAGGAGCAGTGTATTGTCACGTGATGGTACCTCTCCAAGGTTGCCTGTGGCACACATGGTATGCAATCAATCACCACCAGTGGGAGACAAACCCAGCTTGATGACCTTCCGCGAGGTTGAGACCGTCTTCCATGAATTTGGTCATGCACTTCAGCATATGCTGACTAAGCAAGATGAGGGTCTTGTTGCTGGTATCCGGGGGGTAGAGTGGGATGCTGTTGAATTGCCCTCACAGTTCATGGAAAATTGGTGTTACCACAGAGACACTTTAATGAGCATTGCTAAGCATTATGAAACTGCGGAAACCCTTCCAGAAGAAGTATTCCTGAAGCTTCTTGCAGCTAGGACTTTTCGTGCCGGCTCCCTAAGCCTTCGACAGATAAGATTTGCAATTGTAGATCTGAAGCTGCACACGGATTACATACCTGGTGGGTCAGAATCCATTTATGATGTTGATCAGAGGGTTAGTGAAAAAACACAAGTGATCCCCCCACTTCCAGAAGATAGGTTCCTTTGTGGTTTCAGCCATATCTTTGCAGGTTTGCTTTCACTTTCTGGCTTTCAATTTCCCAGCAATGTTCAGAATTCTTCCTTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031974 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

739

Amino Acids

83.38

Weight (kDa)

6.13

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP_N	PF19310	134 - 256	2.4e-57	Neurolysin/Thimet oligopeptidase, N-terminal domain
Peptidase_M3	PF01432	336 - 720	1.1e-106	Peptidase family M3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10540 AT5G65620 AT5G65620
fragaria_vesca	FvH4_1g19050 FvH4_1g19050 FvH4_1g19050
malus_domestica	MD01G1044200.v1.1
prunus_persica	Prupe.6G167100_v2.0.a1 Prupe.6G167100_v2.0.a1 Prupe.6G209200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0110061 RchiOBHm_Chr7g0233391
rosa_laevigata	RLG00000001272 RLG00000017783
rosa_multiflora	Rmu_co8163522.1_g000001 Rmu_co8337137.1_g000001 Rmu_sc0008806.1_g000009 Rmu_sc0009935.1_g000003 Rmu_sc0013750.1_g000001 Rmu_sc0024311.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133750
rosa_rugosa	Rorug02G0165400 Rorug02G0165400
rosa_samantha	Rh2AG217200 Rh2BG227200 Rh2CG219400 Rh2DG222900 Rh7CG455700
rosa_wichuraiana	Rw0G010890 Rw2G016780 Rw7G035960 Rw7G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	372
Acc36I	ACCTGC	1 cut(s)	2147
Acc65I	GGTACC	1 cut(s)	1646
AccB1I	GGYRCC	2 cut(s)	481, 1646
AccB7I	CCANNNNNTGG	1 cut(s)	1475
AccBSI	CCGCTC	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	2 cut(s)	96, 1731
AciI	CCGC	4 cut(s)	109, 297, 1729, 1919
AclWI	GGATC	4 cut(s)	1532, 1545, 1556, 2098
AcoI	YGGCCR	2 cut(s)	294, 467
AcsI	RAATTY	8 cut(s)	36, 399, 815, 848, 1276, 1364, 1754, 2203
AcuI	CTGAAG	3 cut(s)	1754, 1967, 2042
AcvI	CACGTG	2 cut(s)	388, 1640
AcyI	GRCGYC	2 cut(s)	369, 378
AfaI	GTAC	2 cut(s)	1614, 1648
AfiI	CCNNNNNNNGG	5 cut(s)	292, 724, 1475, 1656, 1700
AflII	CTTAAG	1 cut(s)	1271
AgeI	ACCGGT	2 cut(s)	504, 1026
AjnI	CCWGG	2 cut(s)	394, 2044
AjuI	GAANNNNNNNTTGG	4 cut(s)	1109, 1141, 1222, 1254
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	5 cut(s)	121, 813, 1698, 1733, 1875
AlwI	GGATC	4 cut(s)	1532, 1545, 1556, 2098
AlwNI	CAGNNNCTG	2 cut(s)	899, 1307
Ama87I	CYCGRG	1 cut(s)	422
AoxI	GGCC	5 cut(s)	57, 294, 467, 965, 1423
ApeKI	GCWGC	5 cut(s)	305, 572, 914, 1958, 2026
ApoI	RAATTY	8 cut(s)	36, 399, 815, 848, 1276, 1364, 1754, 2203
ArsI	GACNNNNNNTTYG	2 cut(s)	384, 416
AsiGI	ACCGGT	2 cut(s)	504, 1026
Asp700I	GAANNNNTTC	3 cut(s)	1212, 1234, 1926
Asp718I	GGTACC	1 cut(s)	1646
AspLEI	GCGC	2 cut(s)	450, 1392
AspS9I	GGNCC	2 cut(s)	965, 989
AsuC2I	CCSGG	2 cut(s)	344, 1817
AsuHPI	GGTGA	2 cut(s)	856, 1683
AsuII	TTCGAA	1 cut(s)	1228
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	989
BamHI	GGATCC	1 cut(s)	1537
BanI	GGYRCC	2 cut(s)	481, 1646
BanII	GRGCYC	3 cut(s)	52, 142, 409
BauI	CACGAG	1 cut(s)	1065
BbrPI	CACGTG	2 cut(s)	388, 1640
BbsI	GAAGAC	4 cut(s)	195, 686, 1272, 1738
Bbv12I	GWGCWC	1 cut(s)	142
BbvCI	CCTCAGC	1 cut(s)	1164
BbvI	GCAGC	5 cut(s)	292, 559, 901, 1970, 2013
BccI	CCATC	7 cut(s)	189, 878, 1415, 1469, 1585, 1597, 1637
BceAI	ACGGC	2 cut(s)	293, 469
BcgI	CGANNNNNNTGC	2 cut(s)	1001, 1035
BciT130I	CCWGG	2 cut(s)	396, 2046
BciVI	GTATCC	1 cut(s)	1823
BclI	TGATCA	1 cut(s)	2074
BcnI	CCSGG	2 cut(s)	344, 1817
BcoDI	GTCTC	5 cut(s)	121, 813, 1698, 1733, 1875
BfaI	CTAG	7 cut(s)	797, 905, 1074, 1217, 1436, 1620, 1962
BfrI	CTTAAG	1 cut(s)	1271
BfuAI	ACCTGC	1 cut(s)	2147
BfuI	GTATCC	1 cut(s)	1823
BglI	GCCNNNNNGGC	2 cut(s)	56, 466
BglII	AGATCT	1 cut(s)	2017
BisI	GCNGC	6 cut(s)	297, 306, 573, 915, 1959, 2027
BlpI	GCTNAGC	1 cut(s)	1902
BlsI	GCNGC	6 cut(s)	298, 307, 574, 916, 1960, 2028
BmcAI	AGTACT	1 cut(s)	1614
Bme1390I	CCNGG	4 cut(s)	344, 396, 1817, 2046
Bme18I	GGWCC	1 cut(s)	989
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	2 cut(s)	965, 989
BmiI	GGNNCC	6 cut(s)	459, 483, 1539, 1648, 1981, 2129
BmrFI	CCNGG	4 cut(s)	344, 396, 1817, 2046
BmrI	ACTGGG	1 cut(s)	1333
BmsI	GCATC	5 cut(s)	682, 826, 1079, 1285, 1822
BmuI	ACTGGG	1 cut(s)	1333
BpiI	GAAGAC	4 cut(s)	195, 686, 1272, 1738
BplI	GAGNNNNNCTC	2 cut(s)	679, 711
BpmI	CTGGAG	2 cut(s)	1269, 1284
Bpu10I	CCTNAGC	4 cut(s)	19, 1121, 1164, 1985
Bpu1102I	GCTNAGC	1 cut(s)	1902
Bpu14I	TTCGAA	1 cut(s)	1228
BpuEI	CTTGAG	2 cut(s)	116, 773
BpuMI	CCSGG	2 cut(s)	344, 1817
BsaAI	YACGTR	2 cut(s)	388, 1640
BsaBI	GATNNNNATC	1 cut(s)	2073
BsaHI	GRCGYC	2 cut(s)	369, 378
BsaI	GGTCTC	1 cut(s)	1733
BsaJI	CCNNGG	4 cut(s)	24, 968, 1655, 1816
BsaWI	WCCGGW	4 cut(s)	504, 592, 1026, 1486
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	5 cut(s)	292, 724, 1475, 1656, 1700
Bse118I	RCCGGY	3 cut(s)	504, 1026, 1976
Bse1I	ACTGG	3 cut(s)	470, 1328, 1697
Bse3DI	GCAATG	2 cut(s)	1896, 2200
Bse8I	GATNNNNATC	1 cut(s)	2073
BseBI	CCWGG	2 cut(s)	396, 2046
BseDI	CCNNGG	4 cut(s)	24, 968, 1655, 1816
BseGI	GGATG	8 cut(s)	181, 248, 763, 841, 1426, 1608, 1612, 1837
BseJI	GATNNNNATC	1 cut(s)	2073
BseLI	CCNNNNNNNGG	5 cut(s)	292, 724, 1475, 1656, 1700
BseMI	GCAATG	2 cut(s)	1896, 2200
BseMII	CTCAG	5 cut(s)	126, 710, 948, 1155, 1572
BseNI	ACTGG	3 cut(s)	470, 1328, 1697
BseRI	GAGGAG	6 cut(s)	116, 119, 218, 316, 329, 452
BseXI	GCAGC	5 cut(s)	292, 559, 901, 1970, 2013
BseYI	CCCAGC	2 cut(s)	1712, 2189
BsgI	GTGCAG	2 cut(s)	900, 2012
Bsh1236I	CGCG	2 cut(s)	96, 1731
BshFI	GGCC	5 cut(s)	59, 296, 469, 967, 1425
BshNI	GGYRCC	2 cut(s)	481, 1646
BshTI	ACCGGT	2 cut(s)	504, 1026
BsiHKAI	GWGCWC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	7 cut(s)	343, 505, 593, 1027, 1487, 1816, 1977
BslFI	GGGAC	4 cut(s)	174, 359, 636, 1340
BslI	CCNNNNNNNGG	5 cut(s)	292, 724, 1475, 1656, 1700
BsmAI	GTCTC	5 cut(s)	121, 813, 1698, 1733, 1875
BsmFI	GGGAC	4 cut(s)	174, 359, 636, 1340
BsnI	GGCC	5 cut(s)	59, 296, 469, 967, 1425
Bso31I	GGTCTC	1 cut(s)	1733
BsoBI	CYCGRG	1 cut(s)	422
Bsp119I	TTCGAA	1 cut(s)	1228
Bsp1286I	GDGCHC	3 cut(s)	52, 142, 409
Bsp143I	GATC	6 cut(s)	495, 1537, 1561, 2017, 2074, 2103
Bsp1720I	GCTNAGC	1 cut(s)	1902
BspACI	CCGC	4 cut(s)	109, 297, 1729, 1919
BspANI	GGCC	5 cut(s)	59, 296, 469, 967, 1425
BspCNI	CTCAG	5 cut(s)	125, 709, 949, 1156, 1573
BspFNI	CGCG	2 cut(s)	96, 1731
BspLI	GGNNCC	6 cut(s)	459, 483, 1539, 1648, 1981, 2129
BspMI	ACCTGC	1 cut(s)	2147
BspPI	GGATC	4 cut(s)	1532, 1545, 1556, 2098
BspQI	GCTCTTC	2 cut(s)	286, 1203
BspT104I	TTCGAA	1 cut(s)	1228
BspT107I	GGYRCC	2 cut(s)	481, 1646
BspTI	CTTAAG	1 cut(s)	1271
BspTNI	GGTCTC	1 cut(s)	1733
BsrBI	CCGCTC	1 cut(s)	111
BsrDI	GCAATG	2 cut(s)	1896, 2200
BsrFI	RCCGGY	3 cut(s)	504, 1026, 1976
BsrI	ACTGG	3 cut(s)	470, 1328, 1697
BssAI	RCCGGY	3 cut(s)	504, 1026, 1976
BssECI	CCNNGG	4 cut(s)	24, 968, 1655, 1816
BssMI	GATC	6 cut(s)	495, 1537, 1561, 2017, 2074, 2103
BssNI	GRCGYC	2 cut(s)	369, 378
BssSI	CACGAG	1 cut(s)	1065
BssT1I	CCWWGG	3 cut(s)	24, 968, 1655
Bst2BI	CACGAG	1 cut(s)	1065
Bst2UI	CCWGG	2 cut(s)	396, 2046
Bst4CI	ACNGT	8 cut(s)	454, 514, 807, 989, 1052, 1195, 1744, 1854
Bst6I	CTCTTC	2 cut(s)	286, 1203
BstACI	GRCGYC	2 cut(s)	369, 378
BstAFI	CTTAAG	1 cut(s)	1271
BstBAI	YACGTR	2 cut(s)	388, 1640
BstBI	TTCGAA	1 cut(s)	1228
BstC8I	GCNNGC	6 cut(s)	9, 32, 138, 632, 894, 1978
BstENI	CCTNNNNNAGG	1 cut(s)	1654
BstF5I	GGATG	8 cut(s)	181, 248, 763, 841, 1426, 1608, 1612, 1837
BstFNI	CGCG	2 cut(s)	96, 1731
BstHHI	GCGC	2 cut(s)	450, 1392
BstKTI	GATC	6 cut(s)	498, 1540, 1564, 2020, 2077, 2106
BstMAI	GTCTC	5 cut(s)	121, 813, 1698, 1733, 1875
BstMBI	GATC	6 cut(s)	495, 1537, 1561, 2017, 2074, 2103
BstNI	CCWGG	2 cut(s)	396, 2046
BstNSI	RCATGY	2 cut(s)	82, 1019
BstSCI	CCNGG	4 cut(s)	342, 394, 1815, 2044
BstUI	CGCG	2 cut(s)	96, 1731
BstV1I	GCAGC	5 cut(s)	292, 559, 901, 1970, 2013
BstV2I	GAAGAC	4 cut(s)	195, 686, 1272, 1738
BstX2I	RGATCY	2 cut(s)	1537, 2017
BstXI	CCANNNNNNTGG	1 cut(s)	1757
BstYI	RGATCY	2 cut(s)	1537, 2017
BsuI	GTATCC	1 cut(s)	1823
BsuRI	GGCC	5 cut(s)	59, 296, 469, 967, 1425
BtsCI	GGATG	8 cut(s)	181, 248, 763, 841, 1426, 1608, 1612, 1837
BtsI	GCAGTG	2 cut(s)	933, 1633
BtsIMutI	CAGTG	4 cut(s)	933, 1321, 1633, 1704
BveI	ACCTGC	1 cut(s)	2147
Cac8I	GCNNGC	6 cut(s)	9, 32, 138, 632, 894, 1978
CaiI	CAGNNNCTG	2 cut(s)	899, 1307
CfoI	GCGC	2 cut(s)	450, 1392
Cfr10I	RCCGGY	3 cut(s)	504, 1026, 1976
Cfr13I	GGNCC	2 cut(s)	965, 989
CseI	GACGC	2 cut(s)	85, 386
CsiI	ACCWGGT	1 cut(s)	2044
Csp6I	GTAC	2 cut(s)	1613, 1647
CspAI	ACCGGT	2 cut(s)	504, 1026
CviAII	CATG	9 cut(s)	79, 85, 941, 1016, 1174, 1675, 1751, 1763, 1858
CviQI	GTAC	2 cut(s)	1613, 1647
DpnI	GATC	6 cut(s)	497, 1539, 1563, 2019, 2076, 2105
DpnII	GATC	6 cut(s)	495, 1537, 1561, 2017, 2074, 2103
DraI	TTTAAA	1 cut(s)	652
EaeI	YGGCCR	2 cut(s)	294, 467
Eam1104I	CTCTTC	2 cut(s)	286, 1203
EarI	CTCTTC	2 cut(s)	286, 1203
Ecl136II	GAGCTC	1 cut(s)	140
Eco130I	CCWWGG	3 cut(s)	24, 968, 1655
Eco24I	GRGCYC	3 cut(s)	52, 142, 409
Eco31I	GGTCTC	1 cut(s)	1733
Eco32I	GATATC	1 cut(s)	1372
Eco47I	GGWCC	1 cut(s)	989
Eco53kI	GAGCTC	1 cut(s)	140
Eco57I	CTGAAG	3 cut(s)	1754, 1967, 2042
Eco72I	CACGTG	2 cut(s)	388, 1640
Eco88I	CYCGRG	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	140
EcoNI	CCTNNNNNAGG	1 cut(s)	1654
EcoRI	GAATTC	2 cut(s)	399, 2203
EcoRII	CCWGG	2 cut(s)	394, 2044
EcoRV	GATATC	1 cut(s)	1372
EcoT14I	CCWWGG	3 cut(s)	24, 968, 1655
EcoT38I	GRGCYC	3 cut(s)	52, 142, 409
ErhI	CCWWGG	3 cut(s)	24, 968, 1655
FaeI	CATG	9 cut(s)	82, 88, 944, 1019, 1177, 1678, 1754, 1766, 1861
FalI	AAGNNNNNCTT	4 cut(s)	757, 789, 1222, 1254
FaqI	GGGAC	4 cut(s)	174, 359, 636, 1340
FatI	CATG	9 cut(s)	78, 84, 940, 1015, 1173, 1674, 1750, 1762, 1857
FauI	CCCGC	1 cut(s)	116
FauNDI	CATATG	1 cut(s)	1776
FbaI	TGATCA	1 cut(s)	2074
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	6 cut(s)	297, 306, 573, 915, 1959, 2027
FokI	GGATG	8 cut(s)	168, 235, 770, 848, 1433, 1615, 1619, 1844
FriOI	GRGCYC	3 cut(s)	52, 142, 409
Fsp4HI	GCNGC	6 cut(s)	297, 306, 573, 915, 1959, 2027
FspBI	CTAG	7 cut(s)	797, 905, 1074, 1217, 1436, 1620, 1962
GlaI	GCGC	2 cut(s)	449, 1391
GluI	GCNGC	6 cut(s)	297, 306, 573, 915, 1959, 2027
GsaI	CCCAGC	2 cut(s)	1716, 2193
GsuI	CTGGAG	2 cut(s)	1269, 1284
HaeIII	GGCC	5 cut(s)	59, 296, 469, 967, 1425
HapII	CCGG	7 cut(s)	343, 505, 593, 1027, 1487, 1816, 1977
HgaI	GACGC	2 cut(s)	85, 386
HhaI	GCGC	2 cut(s)	450, 1392
Hin1I	GRCGYC	2 cut(s)	369, 378
Hin1II	CATG	9 cut(s)	82, 88, 944, 1019, 1177, 1678, 1754, 1766, 1861
Hin6I	GCGC	2 cut(s)	448, 1390
HinP1I	GCGC	2 cut(s)	448, 1390
HincII	GTYRAC	5 cut(s)	313, 376, 502, 510, 532
HindII	GTYRAC	5 cut(s)	313, 376, 502, 510, 532
HindIII	AAGCTT	3 cut(s)	1118, 1139, 1949
HpaII	CCGG	7 cut(s)	343, 505, 593, 1027, 1487, 1816, 1977
HphI	GGTGA	2 cut(s)	856, 1683
Hpy166II	GTNNAC	5 cut(s)	313, 376, 502, 510, 532
Hpy188I	TCNGA	9 cut(s)	430, 562, 699, 1146, 1582, 2022, 2056, 2079, 2202
Hpy8I	GTNNAC	5 cut(s)	313, 376, 502, 510, 532
Hpy99I	CGWCG	6 cut(s)	273, 314, 317, 371, 374, 562
HpyAV	CCTTC	8 cut(s)	217, 223, 268, 373, 1237, 1735, 1937, 2000
HpyCH4III	ACNGT	8 cut(s)	454, 514, 807, 989, 1052, 1195, 1744, 1854
HpyCH4IV	ACGT	4 cut(s)	369, 387, 703, 1639
HpySE526I	ACGT	4 cut(s)	369, 387, 703, 1639
Hsp92I	GRCGYC	2 cut(s)	369, 378
Hsp92II	CATG	9 cut(s)	82, 88, 944, 1019, 1177, 1678, 1754, 1766, 1861
HspAI	GCGC	2 cut(s)	448, 1390
KpnI	GGTACC	1 cut(s)	1650
KroI	GCCGGC	1 cut(s)	1976
KroNI	GCCGGC	1 cut(s)	1978
Ksp22I	TGATCA	1 cut(s)	2074
Kzo9I	GATC	6 cut(s)	495, 1537, 1561, 2017, 2074, 2103
LguI	GCTCTTC	2 cut(s)	286, 1203
Lsp1109I	GCAGC	5 cut(s)	292, 559, 901, 1970, 2013
LweI	GCATC	5 cut(s)	682, 826, 1079, 1285, 1822
MabI	ACCWGGT	1 cut(s)	2044
MaeI	CTAG	7 cut(s)	797, 905, 1074, 1217, 1436, 1620, 1962
MaeII	ACGT	4 cut(s)	369, 387, 703, 1639
MaeIII	GTNAC	3 cut(s)	1060, 1635, 1871
MalI	GATC	6 cut(s)	497, 1539, 1563, 2019, 2076, 2105
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	6 cut(s)	495, 1537, 1561, 2017, 2074, 2103
MfeI	CAATTG	1 cut(s)	2010
MflI	RGATCY	2 cut(s)	1537, 2017
MhlI	GDGCHC	3 cut(s)	52, 142, 409
MlyI	GAGTC	6 cut(s)	434, 534, 548, 659, 1100, 1367
MmeI	TCCRAC	4 cut(s)	423, 468, 540, 1107
MroNI	GCCGGC	1 cut(s)	1976
MroXI	GAANNNNTTC	3 cut(s)	1212, 1234, 1926
MseI	TTAA	7 cut(s)	549, 651, 777, 860, 1272, 1889, 2218
MslI	CAYNNNNRTG	3 cut(s)	83, 945, 1889
MspCI	CTTAAG	1 cut(s)	1271
MspI	CCGG	7 cut(s)	343, 505, 593, 1027, 1487, 1816, 1977
MspR9I	CCNGG	4 cut(s)	344, 396, 1817, 2046
MunI	CAATTG	1 cut(s)	2010
MvaI	CCWGG	2 cut(s)	396, 2046
MvnI	CGCG	2 cut(s)	96, 1731
NaeI	GCCGGC	1 cut(s)	1978
NciI	CCSGG	2 cut(s)	344, 1817
NdeI	CATATG	1 cut(s)	1776
NdeII	GATC	6 cut(s)	495, 1537, 1561, 2017, 2074, 2103
NgoMIV	GCCGGC	1 cut(s)	1976
NlaIII	CATG	9 cut(s)	82, 88, 944, 1019, 1177, 1678, 1754, 1766, 1861
NlaIV	GGNNCC	6 cut(s)	459, 483, 1539, 1648, 1981, 2129
NmuCI	GTSAC	1 cut(s)	1635
NspI	RCATGY	2 cut(s)	82, 1019
NspV	TTCGAA	1 cut(s)	1228
PaeR7I	CTCGAG	1 cut(s)	422
PciSI	GCTCTTC	2 cut(s)	286, 1203
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PdiI	GCCGGC	1 cut(s)	1978
PdmI	GAANNNNTTC	3 cut(s)	1212, 1234, 1926
PfeI	GAWTC	4 cut(s)	317, 1509, 1526, 2057
PflMI	CCANNNNNTGG	1 cut(s)	1475
PfoI	TCCNGGA	1 cut(s)	342
PinAI	ACCGGT	2 cut(s)	504, 1026
PkrI	GCNGC	6 cut(s)	298, 307, 574, 916, 1960, 2028
PleI	GAGTC	6 cut(s)	433, 533, 548, 659, 1100, 1366
PmaCI	CACGTG	2 cut(s)	388, 1640
PmlI	CACGTG	2 cut(s)	388, 1640
PpsI	GAGTC	6 cut(s)	433, 533, 548, 659, 1100, 1366
Ppu21I	YACGTR	2 cut(s)	388, 1640
Psp124BI	GAGCTC	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	394, 2044
PspCI	CACGTG	2 cut(s)	388, 1640
PspFI	CCCAGC	2 cut(s)	1712, 2189
PspGI	CCWGG	2 cut(s)	394, 2044
PspN4I	GGNNCC	6 cut(s)	459, 483, 1539, 1648, 1981, 2129
PspPI	GGNCC	2 cut(s)	965, 989
PspXI	VCTCGAGB	1 cut(s)	422
PstNI	CAGNNNCTG	2 cut(s)	899, 1307
PsuI	RGATCY	2 cut(s)	1537, 2017
RsaI	GTAC	2 cut(s)	1614, 1648
RsaNI	GTAC	2 cut(s)	1613, 1647
RseI	CAYNNNNRTG	3 cut(s)	83, 945, 1889
SacI	GAGCTC	1 cut(s)	142
SalI	GTCGAC	1 cut(s)	311
SapI	GCTCTTC	2 cut(s)	286, 1203
SaqAI	TTAA	7 cut(s)	549, 651, 777, 860, 1272, 1889, 2218
SatI	GCNGC	6 cut(s)	297, 306, 573, 915, 1959, 2027
Sau3AI	GATC	6 cut(s)	495, 1537, 1561, 2017, 2074, 2103
Sau96I	GGNCC	2 cut(s)	965, 989
ScaI	AGTACT	1 cut(s)	1614
SchI	GAGTC	6 cut(s)	434, 534, 548, 659, 1100, 1367
ScrFI	CCNGG	4 cut(s)	344, 396, 1817, 2046
SduI	GDGCHC	3 cut(s)	52, 142, 409
SexAI	ACCWGGT	1 cut(s)	2044
SfaNI	GCATC	5 cut(s)	682, 826, 1079, 1285, 1822
Sfr274I	CTCGAG	1 cut(s)	422
SfuI	TTCGAA	1 cut(s)	1228
SgrDI	CGTCGACG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	989
SlaI	CTCGAG	1 cut(s)	422
SmiMI	CAYNNNNRTG	3 cut(s)	83, 945, 1889
SmlI	CTYRAG	4 cut(s)	131, 422, 752, 1271
SmoI	CTYRAG	4 cut(s)	131, 422, 752, 1271
SsiI	CCGC	4 cut(s)	109, 297, 1729, 1919
SspMI	CTAG	7 cut(s)	797, 905, 1074, 1217, 1436, 1620, 1962
SstI	GAGCTC	1 cut(s)	142
StyD4I	CCNGG	4 cut(s)	342, 394, 1815, 2044
StyI	CCWWGG	3 cut(s)	24, 968, 1655
TaaI	ACNGT	8 cut(s)	454, 514, 807, 989, 1052, 1195, 1744, 1854
TaiI	ACGT	4 cut(s)	372, 390, 706, 1642
TaqI	TCGA	9 cut(s)	312, 351, 366, 403, 423, 1021, 1228, 1560, 1993
TatI	WGTACW	1 cut(s)	1612
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	4 cut(s)	317, 1509, 1526, 2057
Tru1I	TTAA	7 cut(s)	549, 651, 777, 860, 1272, 1889, 2218
Tru9I	TTAA	7 cut(s)	549, 651, 777, 860, 1272, 1889, 2218
TscAI	CASTG	4 cut(s)	933, 1328, 1633, 1704
TseFI	GTSAC	1 cut(s)	1635
TseI	GCWGC	5 cut(s)	305, 572, 914, 1958, 2026
Tsp45I	GTSAC	1 cut(s)	1635
TspDTI	ATGAA	6 cut(s)	17, 957, 1623, 1767, 1846, 1926
TspGWI	ACGGA	1 cut(s)	2048
TspRI	CASTG	4 cut(s)	933, 1328, 1633, 1704
Van91I	CCANNNNNTGG	1 cut(s)	1475
Vha464I	CTTAAG	1 cut(s)	1271
VpaK11BI	GGWCC	1 cut(s)	989
XagI	CCTNNNNNAGG	1 cut(s)	1654
XapI	RAATTY	8 cut(s)	36, 399, 815, 848, 1276, 1364, 1754, 2203
XbaI	TCTAGA	1 cut(s)	1216
XceI	RCATGY	2 cut(s)	82, 1019
XhoI	CTCGAG	1 cut(s)	422
XmiI	GTMKAC	1 cut(s)	312
XmnI	GAANNNNTTC	3 cut(s)	1212, 1234, 1926
XspI	CTAG	7 cut(s)	797, 905, 1074, 1217, 1436, 1620, 1962
ZraI	GACGTC	1 cut(s)	370
ZrmI	AGTACT	1 cut(s)	1614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.