Rmu_sc0009935.1_g000003

Oligopeptidase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009935.1
Physical Location & Seq
Reverse (-)
19980 .. 26385
6406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009935.1_g000003.1.cds

Sequence Viewer

Length: 1710 bp
atgatagagcttggagcagaaccgacatggtctacagttgtgttgccatttaagaagattgttgaacggatgattgagccttgcgagattgttggtctccttaagaatcttaaagactctgaagagcttcgtgatgctcttaaaaaagtcttgccattgaaggtgaagtttaatatgaaattgactcaaagcaaagcaatttataaggccttcacagctattcgagaatctcatgattgggagacaatgagtgatgctaggaaacgaatagttgaatggcatatcaaggagtcggacctggccggtatcaatcttgatgatgctaagagagagtatcttagagatattgaacagaagctacaaaatcaatatgaaatttttgaggagaatgtactagacgccagaacagaaaagctagttaccatagcaggcagtgttttgggattgccaattgctctacttaaattagctgcggaacgagcaagattgaagggacataaaaaagcaacgactaaaaaggggccttggctattcactctcgaagattatgagtgtattcagatgtatgctcgagaacggtcttttcgtgaagaagtttacttagcttttgtaacttctctctcaactggagattttgataatactccagtcatcaagtcaattttggaactcagattgcagaaggctaagcttctcaattataataactatgctgaggtaagcatgaaaacaaagtgtgctaccactgaaaaagcgaaaaatctgctaaaagaactccaaaataagctttggaaagctggacttgaagagattgaagaacttaagcatatggctagagaacagaatgctgaagaagctgaggacttcaggccttgggacaatgccttttggagagaactgctacttgaaacaaaagttccaggctataaggagggcaggaatcgatacttcatctttcctgatgtcatggatgcactacttcacttgtcatatgtgttgtttgaaattcatattgcagaggccgatggcacagctccggtttgggatagagatgtgaaattgtattccatctcagattctcacagtaccattggatatatattttttgatccattctctcgccctgagaaaatagtcggggcagcgacgggtggatttttttccagaagtgtagactatgatgggaactctaaaaggctgcctatggcatacatattctgcaatctacgtcggccagcaaaggagagtgctcagattcttatgctttttgaggaggtacgagttgttttccatgaatttggtcatgcatttcagcatgtattgacaaagcaagatgaaacgctagtggctggttttcggaatatagagcaagattgtattgaagtaccctccacattcatggaaaaatggtgttaccacagggacacttttatgagaattgcgggaggtgcaaacttgcagcctcttaaagataaaactccaatttgcgatactcttgatgagtggtctgagatgttttcggccgatgctttttcggcatttgaagatgctggactggacgatgaaaaggttctcacaacaaaagggtgcaagtttcgagatttcgttcttgctgttggaggtgggaaagcacccgaaaaggtttttgaggattttctaggacgtcaacctacattggacgcacttgtcaagcacaagcttagtttgtag

Protein Analysis

569

Amino Acids

65.48

Weight (kDa)

5.81

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 204, 702
AasI GACNNNNNNGTC 1 cut(s) 1685
AatII GACGTC 1 cut(s) 1666
AccI GTMKAC 2 cut(s) 32, 1173
AciI CCGC 2 cut(s) 473, 1442
AclWI GGATC 1 cut(s) 1103
AcoI YGGCCR 3 cut(s) 300, 1232, 1521
AcsI RAATTY 3 cut(s) 375, 1005, 1295
AcuI CTGAAG 3 cut(s) 141, 850, 870
AcyI GRCGYC 2 cut(s) 399, 1663
AfaI GTAC 4 cut(s) 393, 1087, 1278, 1386
AflII CTTAAG 2 cut(s) 101, 821
AjnI CCWGG 2 cut(s) 297, 919
Alw21I GWGCWC 1 cut(s) 1252
Alw26I GTCTC 2 cut(s) 101, 236
AlwI GGATC 1 cut(s) 1103
Ama87I CYCGRG 1 cut(s) 570
AoxI GGCC 7 cut(s) 207, 300, 521, 869, 1020, 1232, 1521
ApeKI GCWGC 4 cut(s) 470, 1142, 1198, 1459
ApoI RAATTY 3 cut(s) 375, 1005, 1295
Asp700I GAANNNNTTC 2 cut(s) 126, 1569
AspS9I GGNCC 2 cut(s) 295, 521
AsuHPI GGTGA 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 570
AvaII GGWCC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 1252
BbvCI CCTCAGC 2 cut(s) 714, 858
BbvI GCAGC 4 cut(s) 457, 1154, 1185, 1471
BccI CCATC 3 cut(s) 1019, 1076, 1175
BcgI CGANNNNNNTGC 2 cut(s) 745, 779
BciT130I CCWGG 2 cut(s) 299, 921
BcoDI GTCTC 2 cut(s) 101, 236
BfaI CTAG 6 cut(s) 258, 395, 416, 834, 1343, 1658
BfmI CTRYAG 1 cut(s) 33
BfrI CTTAAG 2 cut(s) 101, 821
BisI GCNGC 4 cut(s) 471, 1143, 1199, 1460
BlpI GCTNAGC 1 cut(s) 687
BlsI GCNGC 4 cut(s) 472, 1144, 1200, 1461
Bme1390I CCNGG 2 cut(s) 299, 921
Bme18I GGWCC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 570
BmgT120I GGNCC 2 cut(s) 295, 521
BmiI GGNNCC 1 cut(s) 522
BmrFI CCNGG 2 cut(s) 299, 921
BmsI GCATC 6 cut(s) 124, 244, 310, 961, 1516, 1537
BpmI CTGGAG 2 cut(s) 630, 648
Bpu10I CCTNAGC 2 cut(s) 714, 858
Bpu1102I GCTNAGC 1 cut(s) 687
Bsa29I ATCGAT 1 cut(s) 943
BsaHI GRCGYC 2 cut(s) 399, 1663
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 524, 872
BsaWI WCCGGW 1 cut(s) 1036
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 3 cut(s) 631, 647, 1560
BseBI CCWGG 2 cut(s) 299, 921
BseCI ATCGAT 1 cut(s) 943
BseDI CCNNGG 2 cut(s) 524, 872
BseGI GGATG 2 cut(s) 75, 976
BseMII CTCAG 7 cut(s) 685, 705, 849, 1086, 1116, 1265, 1500
BseNI ACTGG 3 cut(s) 631, 647, 1560
BseRI GAGGAG 2 cut(s) 398, 1286
BseX3I CGGCCG 1 cut(s) 1521
BseXI GCAGC 4 cut(s) 457, 1154, 1185, 1471
Bsh1285I CGRYCG 1 cut(s) 1524
BshFI GGCC 7 cut(s) 209, 302, 523, 871, 1022, 1234, 1523
BshVI ATCGAT 1 cut(s) 943
BsiEI CGRYCG 1 cut(s) 1524
BsiHKAI GWGCWC 1 cut(s) 1252
BsiHKCI CYCGRG 1 cut(s) 570
BsiSI CCGG 2 cut(s) 303, 1037
BslFI GGGAC 3 cut(s) 507, 890, 1436
BsmAI GTCTC 2 cut(s) 101, 236
BsmFI GGGAC 3 cut(s) 507, 890, 1436
BsmI GAATGC 1 cut(s) 850
BsnI GGCC 7 cut(s) 209, 302, 523, 871, 1022, 1234, 1523
Bso31I GGTCTC 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 570
Bsp1286I GDGCHC 1 cut(s) 1252
Bsp143I GATC 1 cut(s) 1108
Bsp1720I GCTNAGC 1 cut(s) 687
BspACI CCGC 2 cut(s) 473, 1442
BspANI GGCC 7 cut(s) 209, 302, 523, 871, 1022, 1234, 1523
BspCNI CTCAG 7 cut(s) 684, 706, 850, 1085, 1117, 1264, 1501
BspDI ATCGAT 1 cut(s) 943
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 522
BspPI GGATC 1 cut(s) 1103
BspQI GCTCTTC 1 cut(s) 117
BspTI CTTAAG 2 cut(s) 101, 821
BspTNI GGTCTC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 3 cut(s) 631, 647, 1560
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 2 cut(s) 524, 872
BssMI GATC 1 cut(s) 1108
BssNI GRCGYC 2 cut(s) 399, 1663
BssT1I CCWWGG 2 cut(s) 524, 872
Bst2UI CCWGG 2 cut(s) 299, 921
Bst4CI ACNGT 3 cut(s) 37, 579, 1085
Bst6I CTCTTC 2 cut(s) 117, 801
BstACI GRCGYC 2 cut(s) 399, 1663
BstAFI CTTAAG 2 cut(s) 101, 821
BstC8I GCNNGC 2 cut(s) 430, 1236
BstF5I GGATG 2 cut(s) 75, 976
BstKTI GATC 1 cut(s) 1111
BstMAI GTCTC 2 cut(s) 101, 236
BstMBI GATC 1 cut(s) 1108
BstMCI CGRYCG 1 cut(s) 1524
BstMWI GCNNNNNNNGC 5 cut(s) 215, 479, 854, 1448, 1535
BstNI CCWGG 2 cut(s) 299, 921
BstNSI RCATGY 1 cut(s) 1319
BstSCI CCNGG 2 cut(s) 297, 919
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 4 cut(s) 457, 1154, 1185, 1471
BstXI CCANNNNNNTGG 2 cut(s) 1298, 1399
BstZI CGGCCG 1 cut(s) 1521
Bsu15I ATCGAT 1 cut(s) 943
BsuRI GGCC 7 cut(s) 209, 302, 523, 871, 1022, 1234, 1523
BsuTUI ATCGAT 1 cut(s) 943
BtsCI GGATG 2 cut(s) 75, 976
BtsI GCAGTG 1 cut(s) 439
BtsIMutI CAGTG 2 cut(s) 439, 744
Cac8I GCNNGC 2 cut(s) 430, 1236
CciI TCATGA 1 cut(s) 232
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 295, 521
ClaI ATCGAT 1 cut(s) 943
CseI GACGC 2 cut(s) 407, 1688
Csp6I GTAC 4 cut(s) 392, 1086, 1277, 1385
CviAII CATG 8 cut(s) 27, 233, 724, 967, 1292, 1304, 1316, 1399
CviQI GTAC 4 cut(s) 392, 1086, 1277, 1385
DpnI GATC 1 cut(s) 1110
DpnII GATC 1 cut(s) 1108
DrdI GACNNNNNNGTC 1 cut(s) 1685
DseDI GACNNNNNNGTC 1 cut(s) 1685
EaeI YGGCCR 3 cut(s) 300, 1232, 1521
EagI CGGCCG 1 cut(s) 1521
Eam1104I CTCTTC 2 cut(s) 117, 801
EarI CTCTTC 2 cut(s) 117, 801
EclXI CGGCCG 1 cut(s) 1521
Eco130I CCWWGG 2 cut(s) 524, 872
Eco147I AGGCCT 2 cut(s) 209, 871
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 295
Eco52I CGGCCG 1 cut(s) 1521
Eco57I CTGAAG 3 cut(s) 141, 850, 870
Eco88I CYCGRG 1 cut(s) 570
EcoO109I RGGNCCY 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 297, 919
EcoT14I CCWWGG 2 cut(s) 524, 872
EcoT22I ATGCAT 1 cut(s) 1309
ErhI CCWWGG 2 cut(s) 524, 872
FaeI CATG 8 cut(s) 30, 236, 727, 970, 1295, 1307, 1319, 1402
FalI AAGNNNNNCTT 2 cut(s) 786, 818
FaqI GGGAC 3 cut(s) 507, 890, 1436
FatI CATG 8 cut(s) 26, 232, 723, 966, 1291, 1303, 1315, 1398
FauI CCCGC 1 cut(s) 1435
FauNDI CATATG 2 cut(s) 828, 991
FblI GTMKAC 2 cut(s) 32, 1173
Fnu4HI GCNGC 4 cut(s) 471, 1143, 1199, 1460
FokI GGATG 2 cut(s) 82, 983
Fsp4HI GCNGC 4 cut(s) 471, 1143, 1199, 1460
FspBI CTAG 6 cut(s) 258, 395, 416, 834, 1343, 1658
GluI GCNGC 4 cut(s) 471, 1143, 1199, 1460
GsuI CTGGAG 2 cut(s) 630, 648
HaeIII GGCC 7 cut(s) 209, 302, 523, 871, 1022, 1234, 1523
HapII CCGG 2 cut(s) 303, 1037
HgaI GACGC 2 cut(s) 407, 1688
Hin1I GRCGYC 2 cut(s) 399, 1663
Hin1II CATG 8 cut(s) 30, 236, 727, 970, 1295, 1307, 1319, 1402
HincII GTYRAC 1 cut(s) 1667
HindII GTYRAC 1 cut(s) 1667
HindIII AAGCTT 3 cut(s) 689, 785, 1697
HinfI GANTC 8 cut(s) 106, 116, 184, 227, 290, 940, 1076, 1255
HpaII CCGG 2 cut(s) 303, 1037
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 4 cut(s) 33, 598, 1174, 1667
Hpy188I TCNGA 8 cut(s) 121, 295, 561, 674, 1075, 1254, 1359, 1510
Hpy8I GTNNAC 4 cut(s) 33, 598, 1174, 1667
Hpy99I CGWCG 2 cut(s) 1150, 1233
HpyAV CCTTC 4 cut(s) 154, 220, 484, 676
HpyCH4III ACNGT 3 cut(s) 37, 579, 1085
HpyCH4IV ACGT 2 cut(s) 1228, 1663
HpyCH4V TGCA 8 cut(s) 679, 974, 1016, 1221, 1307, 1451, 1459, 1590
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 479, 854, 1448, 1535
HpySE526I ACGT 2 cut(s) 1228, 1663
Hsp92I GRCGYC 2 cut(s) 399, 1663
Hsp92II CATG 8 cut(s) 30, 236, 727, 970, 1295, 1307, 1319, 1402
Kzo9I GATC 1 cut(s) 1108
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 2 cut(s) 14, 1039
Lsp1109I GCAGC 4 cut(s) 457, 1154, 1185, 1471
LweI GCATC 6 cut(s) 124, 244, 310, 961, 1516, 1537
MaeI CTAG 6 cut(s) 258, 395, 416, 834, 1343, 1658
MaeII ACGT 2 cut(s) 1228, 1663
MaeIII GTNAC 3 cut(s) 418, 610, 1412
MalI GATC 1 cut(s) 1110
MboI GATC 1 cut(s) 1108
MboII GAAGA 8 cut(s) 67, 134, 554, 602, 818, 827, 863, 1556
MfeI CAATTG 1 cut(s) 450
MhlI GDGCHC 1 cut(s) 1252
MlyI GAGTC 3 cut(s) 110, 178, 299
MmeI TCCRAC 2 cut(s) 273, 1597
Mph1103I ATGCAT 1 cut(s) 1309
MroXI GAANNNNTTC 2 cut(s) 126, 1569
MseI TTAA 8 cut(s) 51, 102, 111, 141, 171, 462, 822, 1467
MslI CAYNNNNRTG 2 cut(s) 1397, 1430
MspCI CTTAAG 2 cut(s) 101, 821
MspI CCGG 2 cut(s) 303, 1037
MspR9I CCNGG 2 cut(s) 299, 921
MunI CAATTG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 850
MvaI CCWGG 2 cut(s) 299, 921
MwoI GCNNNNNNNGC 5 cut(s) 215, 479, 854, 1448, 1535
NdeI CATATG 2 cut(s) 828, 991
NdeII GATC 1 cut(s) 1108
NlaIII CATG 8 cut(s) 30, 236, 727, 970, 1295, 1307, 1319, 1402
NlaIV GGNNCC 1 cut(s) 522
NsiI ATGCAT 1 cut(s) 1309
NspI RCATGY 1 cut(s) 1319
PaeR7I CTCGAG 1 cut(s) 570
PagI TCATGA 1 cut(s) 232
PceI AGGCCT 2 cut(s) 209, 871
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 583
PctI GAATGC 1 cut(s) 850
PdmI GAANNNNTTC 2 cut(s) 126, 1569
PfeI GAWTC 5 cut(s) 106, 227, 940, 1076, 1255
PflFI GACNNNGTC 1 cut(s) 28
PkrI GCNGC 4 cut(s) 472, 1144, 1200, 1461
PleI GAGTC 3 cut(s) 110, 178, 298
PpsI GAGTC 3 cut(s) 110, 178, 298
PsiI TTATAA 2 cut(s) 204, 702
Psp6I CCWGG 2 cut(s) 297, 919
PspGI CCWGG 2 cut(s) 297, 919
PspN4I GGNNCC 1 cut(s) 522
PspPI GGNCC 2 cut(s) 295, 521
PsrI GAACNNNNNNTAC 2 cut(s) 342, 374
PsyI GACNNNGTC 1 cut(s) 28
RsaI GTAC 4 cut(s) 393, 1087, 1278, 1386
RsaNI GTAC 4 cut(s) 392, 1086, 1277, 1385
RseI CAYNNNNRTG 2 cut(s) 1397, 1430
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 8 cut(s) 51, 102, 111, 141, 171, 462, 822, 1467
SatI GCNGC 4 cut(s) 471, 1143, 1199, 1460
Sau3AI GATC 1 cut(s) 1108
Sau96I GGNCC 2 cut(s) 295, 521
SchI GAGTC 3 cut(s) 110, 178, 299
ScrFI CCNGG 2 cut(s) 299, 921
SduI GDGCHC 1 cut(s) 1252
SfaNI GCATC 6 cut(s) 124, 244, 310, 961, 1516, 1537
SfcI CTRYAG 1 cut(s) 33
Sfr274I CTCGAG 1 cut(s) 570
SinI GGWCC 1 cut(s) 295
SlaI CTCGAG 1 cut(s) 570
SmiMI CAYNNNNRTG 2 cut(s) 1397, 1430
SmlI CTYRAG 3 cut(s) 101, 570, 821
SmoI CTYRAG 3 cut(s) 101, 570, 821
SseBI AGGCCT 2 cut(s) 209, 871
SsiI CCGC 2 cut(s) 473, 1442
SspMI CTAG 6 cut(s) 258, 395, 416, 834, 1343, 1658
StuI AGGCCT 2 cut(s) 209, 871
StyD4I CCNGG 2 cut(s) 297, 919
StyI CCWWGG 2 cut(s) 524, 872
TaaI ACNGT 3 cut(s) 37, 579, 1085
TaiI ACGT 2 cut(s) 1231, 1666
TaqI TCGA 5 cut(s) 223, 540, 571, 943, 1597
TatI WGTACW 1 cut(s) 391
TfiI GAWTC 5 cut(s) 106, 227, 940, 1076, 1255
Tru1I TTAA 8 cut(s) 51, 102, 111, 141, 171, 462, 822, 1467
Tru9I TTAA 8 cut(s) 51, 102, 111, 141, 171, 462, 822, 1467
TscAI CASTG 2 cut(s) 439, 751
TseI GCWGC 4 cut(s) 470, 1142, 1198, 1459
TspDTI ATGAA 9 cut(s) 191, 387, 740, 940, 998, 1308, 1350, 1387, 1578
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 2 cut(s) 439, 751
Tth111I GACNNNGTC 1 cut(s) 28
Vha464I CTTAAG 2 cut(s) 101, 821
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 3 cut(s) 375, 1005, 1295
XceI RCATGY 1 cut(s) 1319
XhoI CTCGAG 1 cut(s) 570
XmiI GTMKAC 2 cut(s) 32, 1173
XmnI GAANNNNTTC 2 cut(s) 126, 1569
XspI CTAG 6 cut(s) 258, 395, 416, 834, 1343, 1658
ZraI GACGTC 1 cut(s) 1664
Zsp2I ATGCAT 1 cut(s) 1309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.