Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8337137.1

Orthogroup ID

OG0004392

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 995

Gene Structure 995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8337137.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 286 bp

aagttatacaccttctgggtcagagtctattcatgatgtttatcttcgaccacgaagtgtgattcctgtacatcctggggacaagtcaatttgtacctggatccatatatttggaggtggatatgaagctgggatgtatggctataagtggtctgagatgttttcgaccgatgcgttctcagtatttgaagatgccggactggacaatgaaaaggttctcataacaaaagggtgcgagttccgagattctgttcttgctgttggaggtgggaaagcacccgaaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031974 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

95

Amino Acids

10.39

Weight (kDa)

5.21

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10540 AT5G65620 AT5G65620
fragaria_vesca	FvH4_1g19050 FvH4_1g19050 FvH4_1g19050
malus_domestica	MD01G1044200.v1.1
prunus_persica	Prupe.6G167100_v2.0.a1 Prupe.6G167100_v2.0.a1 Prupe.6G209200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0110061 RchiOBHm_Chr7g0233391
rosa_laevigata	RLG00000001272 RLG00000017783
rosa_multiflora	Rmu_co8163522.1_g000001 Rmu_co8337137.1_g000001 Rmu_sc0008806.1_g000009 Rmu_sc0009935.1_g000003 Rmu_sc0013750.1_g000001 Rmu_sc0024311.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133750
rosa_rugosa	Rorug02G0165400 Rorug02G0165400
rosa_samantha	Rh2AG217200 Rh2BG227200 Rh2CG219400 Rh2DG222900 Rh7CG455700
rosa_wichuraiana	Rw0G010890 Rw2G016780 Rw7G035960 Rw7G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	95, 108
AdeI	CACNNNGTG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	70, 95
AgsI	TTSAA	1 cut(s)	189
AjnI	CCWGG	2 cut(s)	74, 96
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
AlwI	GGATC	2 cut(s)	95, 108
Asp700I	GAANNNNTTC	1 cut(s)	214
BamHI	GGATCC	1 cut(s)	100
BciT130I	CCWGG	2 cut(s)	76, 98
Bme1390I	CCNGG	2 cut(s)	76, 98
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	2 cut(s)	76, 98
BmsI	GCATC	2 cut(s)	161, 182
BsaBI	GATNNNNATC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	205
Bse8I	GATNNNNATC	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	76, 98
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	2 cut(s)	71, 139
BseJI	GATNNNNATC	1 cut(s)	40
BseMII	CTCAG	2 cut(s)	145, 193
BseNI	ACTGG	1 cut(s)	205
BseYI	CCCAGC	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	169
BsiEI	CGRYCG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	93
Bsp1407I	TGTACA	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	100
BspCNI	CTCAG	2 cut(s)	146, 192
BspHI	TCATGA	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	2 cut(s)	95, 108
BsrGI	TGTACA	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	100
Bst2UI	CCWGG	2 cut(s)	76, 98
BstAUI	TGTACA	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	154, 179
BstF5I	GGATG	2 cut(s)	71, 139
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMCI	CGRYCG	1 cut(s)	169
BstNI	CCWGG	2 cut(s)	76, 98
BstSCI	CCNGG	2 cut(s)	74, 96
BstX2I	RGATCY	1 cut(s)	100
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	71, 139
CciI	TCATGA	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	69, 94
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	2 cut(s)	129, 142
CviKI_1	RGCY	2 cut(s)	129, 142
CviQI	GTAC	2 cut(s)	69, 94
DdeI	CTNAG	2 cut(s)	154, 179
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
DraIII	CACNNNGTG	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	74, 96
FaeI	CATG	1 cut(s)	36
FaiI	YATR	8 cut(s)	7, 34, 106, 108, 124, 139, 145, 222
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	1 cut(s)	32
FokI	GGATG	2 cut(s)	58, 146
GsaI	CCCAGC	1 cut(s)	133
HapII	CCGG	1 cut(s)	196
Hin1II	CATG	1 cut(s)	36
HinfI	GANTC	3 cut(s)	24, 62, 246
HpaII	CCGG	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	23, 155, 243
Hpy188III	TCNNGA	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	154, 179
Hsp92II	CATG	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	8 cut(s)	61, 79, 83, 88, 110, 115, 186, 209
LweI	GCATC	2 cut(s)	161, 182
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	36, 201
MflI	RGATCY	1 cut(s)	100
MluCI	AATT	1 cut(s)	88
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	2 cut(s)	108, 258
MroXI	GAANNNNTTC	1 cut(s)	214
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	2 cut(s)	76, 98
MvaI	CCWGG	2 cut(s)	76, 98
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	1 cut(s)	102
PagI	TCATGA	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	62, 246
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	74, 96
PspFI	CCCAGC	1 cut(s)	129
PspGI	CCWGG	2 cut(s)	74, 96
PspN4I	GGNNCC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	100
RsaI	GTAC	2 cut(s)	70, 95
RsaNI	GTAC	2 cut(s)	69, 94
Sau3AI	GATC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	2 cut(s)	76, 98
SetI	ASST	6 cut(s)	14, 99, 119, 131, 217, 269
SfaNI	GCATC	2 cut(s)	161, 182
Sse9I	AATT	1 cut(s)	88
StyD4I	CCNGG	2 cut(s)	74, 96
TaqI	TCGA	2 cut(s)	47, 165
TaqII	GACCGA	1 cut(s)	183
TasI	AATT	1 cut(s)	88
TatI	WGTACW	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	62, 246
TspDTI	ATGAA	3 cut(s)	21, 139, 223
XmnI	GAANNNNTTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.