Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004392

Physical Location & Seq

Genomic Coordinates Forward (+)

71204189 .. 71212017

Gene Structure 7829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00133750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2415 bp

ATGAAGCATGCTCCTCCCTTAGCCCTAGCCTTGGGCTTGCAAATTCCAAGGAGACCCCTATTGGCCTCTCTCCTTATACTCAACATGCTCATGGCAACTCGCGTCATTCTCTCCCGCTCAGTCTCCCCACTCCTCCTCAAGCGAGCTCCTTATCCCCATTTTACCCCTAAACGCTTACCCAAATCCCATCCCTGTCCCCTCTGGTCTTCTTCCTTCTCCTTCTGCCTCACTCTCCTCCCTAAACCCACCCCCACATCCCCTCCCTTCAACTCCCGACGACCTCGCTCTTCCCTCTCAATGGCCGCCTCTGCTGCCGTCGACGAATCGCTCTCCTCCAATCCTCTCCTCCGGGACTTCGACTTCCCTCCCTTCGACGTCGTTGACGCCTCGCACGTGCGACCTGGAATTCGAGCCCTATTGAAGAAGCTCGAGTCTGATTTGGAGGAGTTGGAGCGCACGGTGGAGCCTACCTGGCCGAAGCTGGTGGTGCCGTTGGAGAAGATCGTTGACCGGTTGAGTGTGGTTTGGGGAGTAGTCAACCACCTCAAAGCTGTTAAGGACTCGTCGGAGCTTCGTGCTGCTATTGAAGAAGTGCAACCGGAGAAAGTGAAGTTTTATCTTAGGTTGGGGCAAAGCAAGCCGATTTACAATGCATTTAAAGCAATTCAAGACTCTCCTGATTGGAAGACATTGACTGATGCTCAGAAACGTATAGTTGAAAGGCAAATAAAGGAGGCAGTTCTTAGTGGAGTTGCCCTTGAGGATGATAAAAGAGAGGCTTTTAACAAAATTGAACAGGAACTAGAAAGACTGTCTCAAAAATTTGGGGAGAATGTTCTGGATGCCACAAAGAAATTTGAAAAGTTAATCACCGATAAGAAAGAAATTGATGGATTGCCAGCTACTGCTCTAGGATTGGCTGCACAAACAGCAGTGTCAAAGGGGCATGAAAATGCGACTGCTGAGAATGGGCCTTGGGTATTTACATTAGATGGTCCAAGTTTTCTCTCTGTTATGCAACATGCTCGAAACCGGTCTTTGCGTGAGGAAATATACCGTGCTTATGTAACTCGTGCATCTAGTGGAGAGCTGGATAATACTGCAATTATTGACTCAATCTTGAAGCTTAGGTTGGAAAAGGCTAAGCTTCTGAATTACAACAACTATGCTGAGGTAAGCATGGCAACCAAAATGGCAACTGTTGAAAAAGCAGAAGAGCTTCTAGAGAAACTTCGAAGTGCTTCTTGGAAGGCTGGAGCTCAAGATATGGAAGACCTTAAGAATTTCTGCAAAAGCCAAGAAGCTCCAGAAGCTGATGATTTGAACCACTGGGACATTAGCTTTTGGAGTGAGAGGCTTCGGGAGTCCAAATTTGATATCAACGAGGAAGAATTGCGCCCCTATTTCTCCTTGCCAAAGGTTATGGATGGCCTGTTTAGCCTAGCGAACAAGATTTTTGGAATTGACATTGAACCAGCCGATGGTTTAGCTCCGGTTTGGAACAATGATGTTAGATTCTATCGTGTCAAAGATTCTTCCGGGGATCCTATTGCATATTTTTACTTCGATCCCTATACTCGTCCATCTGAGAAAAGGGGAGGTGCGTGGATGGATGAAGTACTTGCTAGGAGCCGTGTATTGTCACGTGATGGTACCTCTCCAAGGTTGCCTGTGGCACACATGGTTGAGACCGTCTTCCATGAATTTGGTCATGCACTTCAGCATATGCTGACTAAGCAAGATGAGGGTCTTGTTGCTGGTATCCGAGGGGTAGAGTGGGATGCTGTTGAATTGCCCTCACAGTTCATGGAAAATTGGTGTTACCACAGAGACACTTTAATGAGCATTGCTAAGCATTATGAAACTGCGGAAACCCTTCCAGAAGAAGTATTCCTGAAGCTTCTTGCAGCTAGGACTTTTCGTGCCGGCTCCCTAAGCCTTCGACAGATAAGATTTGCAATTGTAGATCTGAAGCTGCACACGGATTACATACCTGGTGGGTCAGAATCCATTTATGATGTTGATCAGAGGGTTAGTGAAAAAACACAAGTGATCCCCCCGCTTCCAGAAGATAGGTTCCTTTGTGGTTTCAGCCATATCTTTGCAGGTGGATATGCAGCTGGGTACTATAGTTACAAGTGGGCTGAGGTCTTGTCTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATAGCAAGGCTGTAAAGAAACCGGAAGCAAGTTCCGAGAAACGATCCTTGCTCTTGGAGGCGGGAAAGCACCACTGGACGTTTTTGTGGAATTCCGAGGACGTGAGCCTTCACCGGAGCCACTGCTCAGGCACAATGGCCTATTACAAGTTGCTACTGCATGAATATCATGTCATTAACAAGCTTTACTGGAGTGCGGGGAAAGACTTGCAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031974 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

804

Amino Acids

90.95

Weight (kDa)

6.38

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP_N	PF19310	136 - 258	3.2e-57	Neurolysin/Thimet oligopeptidase, N-terminal domain
Peptidase_M3	PF01432	338 - 754	3.2e-109	Peptidase family M3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10540 AT5G65620 AT5G65620
fragaria_vesca	FvH4_1g19050 FvH4_1g19050 FvH4_1g19050
malus_domestica	MD01G1044200.v1.1
prunus_persica	Prupe.6G167100_v2.0.a1 Prupe.6G167100_v2.0.a1 Prupe.6G209200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0110061 RchiOBHm_Chr7g0233391
rosa_laevigata	RLG00000001272 RLG00000017783
rosa_multiflora	Rmu_co8163522.1_g000001 Rmu_co8337137.1_g000001 Rmu_sc0008806.1_g000009 Rmu_sc0009935.1_g000003 Rmu_sc0013750.1_g000001 Rmu_sc0024311.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133750
rosa_rugosa	Rorug02G0165400 Rorug02G0165400
rosa_samantha	Rh2AG217200 Rh2BG227200 Rh2CG219400 Rh2DG222900 Rh7CG455700
rosa_wichuraiana	Rw0G010890 Rw2G016780 Rw7G035960 Rw7G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2096
AatII	GACGTC	1 cut(s)	378
Acc36I	ACCTGC	1 cut(s)	2096
Acc65I	GGTACC	1 cut(s)	1652
AccB1I	GGYRCC	2 cut(s)	487, 1652
AccB7I	CCANNNNNTGG	1 cut(s)	1481
AccBSI	CCGCTC	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	1 cut(s)	102
AciI	CCGC	6 cut(s)	115, 303, 1868, 2060, 2258, 2393
AclWI	GGATC	5 cut(s)	1538, 1551, 1562, 2047, 2235
AcoI	YGGCCR	2 cut(s)	300, 473
AcsI	RAATTY	8 cut(s)	42, 405, 821, 854, 1282, 1370, 1703, 2287
AcuI	CTGAAG	3 cut(s)	1703, 1916, 1991
AcvI	CACGTG	2 cut(s)	394, 1646
AcyI	GRCGYC	2 cut(s)	375, 384
AfaI	GTAC	3 cut(s)	1620, 1654, 2126
AfiI	CCNNNNNNNGG	4 cut(s)	31, 298, 1481, 1662
AflII	CTTAAG	1 cut(s)	1277
AgeI	ACCGGT	2 cut(s)	510, 1032
AjiI	CACGTC	1 cut(s)	2299
AjnI	CCWGG	3 cut(s)	400, 470, 1993
AjuI	GAANNNNNNNTTGG	4 cut(s)	1115, 1147, 1228, 1260
Alw21I	GWGCWC	2 cut(s)	148, 1261
Alw26I	GTCTC	5 cut(s)	46, 127, 819, 1682, 1824
AlwI	GGATC	5 cut(s)	1538, 1551, 1562, 2047, 2235
AlwNI	CAGNNNCTG	2 cut(s)	905, 1313
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	6 cut(s)	63, 300, 473, 971, 1429, 2334
ApeKI	GCWGC	6 cut(s)	311, 578, 920, 1907, 1975, 2117
ApoI	RAATTY	8 cut(s)	42, 405, 821, 854, 1282, 1370, 1703, 2287
ArsI	GACNNNNNNTTYG	2 cut(s)	390, 422
AsiGI	ACCGGT	2 cut(s)	510, 1032
Asp700I	GAANNNNTTC	3 cut(s)	1218, 1240, 1875
Asp718I	GGTACC	1 cut(s)	1652
AspLEI	GCGC	2 cut(s)	456, 1398
AspS9I	GGNCC	2 cut(s)	971, 995
AsuC2I	CCSGG	2 cut(s)	350, 1540
AsuHPI	GGTGA	2 cut(s)	862, 2300
AsuII	TTCGAA	1 cut(s)	1234
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	995
BaeI	ACNNNNGTAYC	2 cut(s)	2116, 2149
BamHI	GGATCC	1 cut(s)	1543
BanI	GGYRCC	2 cut(s)	487, 1652
BanII	GRGCYC	3 cut(s)	148, 415, 1261
BauI	CACGAG	1 cut(s)	1071
BbrPI	CACGTG	2 cut(s)	394, 1646
BbsI	GAAGAC	4 cut(s)	198, 692, 1278, 1687
Bbv12I	GWGCWC	2 cut(s)	148, 1261
BbvCI	CCTCAGC	2 cut(s)	1170, 2145
BbvI	GCAGC	6 cut(s)	298, 565, 907, 1919, 1962, 2129
BccI	CCATC	8 cut(s)	195, 884, 986, 1421, 1475, 1591, 1603, 1643
BceAI	ACGGC	3 cut(s)	299, 475, 1617
BcgI	CGANNNNNNTGC	2 cut(s)	1007, 1041
BciT130I	CCWGG	3 cut(s)	402, 472, 1995
BciVI	GTATCC	1 cut(s)	1772
BclI	TGATCA	1 cut(s)	2023
BcnI	CCSGG	2 cut(s)	350, 1540
BcoDI	GTCTC	5 cut(s)	46, 127, 819, 1682, 1824
BfaI	CTAG	8 cut(s)	26, 803, 911, 1080, 1223, 1442, 1626, 1911
BfmI	CTRYAG	1 cut(s)	2128
BfrI	CTTAAG	1 cut(s)	1277
BfuAI	ACCTGC	1 cut(s)	2096
BfuI	GTATCC	1 cut(s)	1772
BglI	GCCNNNNNGGC	1 cut(s)	472
BglII	AGATCT	1 cut(s)	1966
BisI	GCNGC	7 cut(s)	303, 312, 579, 921, 1908, 1976, 2118
BlpI	GCTNAGC	2 cut(s)	1143, 1851
BlsI	GCNGC	7 cut(s)	304, 313, 580, 922, 1909, 1977, 2119
BmcAI	AGTACT	1 cut(s)	1620
Bme1390I	CCNGG	5 cut(s)	350, 402, 472, 1540, 1995
Bme18I	GGWCC	1 cut(s)	995
BmeT110I	CYCGRG	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	2299
BmgT120I	GGNCC	2 cut(s)	971, 995
BmiI	GGNNCC	8 cut(s)	465, 489, 1545, 1631, 1654, 1930, 2078, 2315
BmrFI	CCNGG	5 cut(s)	350, 402, 472, 1540, 1995
BmrI	ACTGGG	1 cut(s)	1339
BmsI	GCATC	6 cut(s)	688, 832, 1085, 1771, 2152, 2173
BmuI	ACTGGG	1 cut(s)	1339
BpiI	GAAGAC	4 cut(s)	198, 692, 1278, 1687
BpmI	CTGGAG	3 cut(s)	1275, 1290, 2407
Bpu10I	CCTNAGC	6 cut(s)	19, 1127, 1170, 1934, 2145, 2323
Bpu1102I	GCTNAGC	2 cut(s)	1143, 1851
Bpu14I	TTCGAA	1 cut(s)	1234
BpuEI	CTTGAG	3 cut(s)	122, 779, 1245
BpuMI	CCSGG	2 cut(s)	350, 1540
BsaAI	YACGTR	2 cut(s)	394, 1646
BsaBI	GATNNNNATC	1 cut(s)	2022
BsaHI	GRCGYC	2 cut(s)	375, 384
BsaI	GGTCTC	2 cut(s)	46, 1682
BsaJI	CCNNGG	7 cut(s)	30, 47, 974, 1539, 1661, 1765, 2292
BsaWI	WCCGGW	6 cut(s)	510, 598, 1032, 1492, 2218, 2310
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 298, 1481, 1662
Bse118I	RCCGGY	3 cut(s)	510, 1032, 1925
Bse1I	ACTGG	3 cut(s)	1334, 2276, 2390
Bse3DI	GCAATG	1 cut(s)	1845
Bse8I	GATNNNNATC	1 cut(s)	2022
BseBI	CCWGG	3 cut(s)	402, 472, 1995
BseDI	CCNNGG	7 cut(s)	30, 47, 974, 1539, 1661, 1765, 2292
BseGI	GGATG	9 cut(s)	187, 254, 769, 847, 1432, 1614, 1618, 1786, 2188
BseJI	GATNNNNATC	1 cut(s)	2022
BseLI	CCNNNNNNNGG	4 cut(s)	31, 298, 1481, 1662
BseMI	GCAATG	1 cut(s)	1845
BseMII	CTCAG	7 cut(s)	132, 716, 954, 1161, 1578, 2136, 2337
BseNI	ACTGG	3 cut(s)	1334, 2276, 2390
BseRI	GAGGAG	6 cut(s)	122, 125, 224, 322, 335, 458
BseXI	GCAGC	6 cut(s)	298, 565, 907, 1919, 1962, 2129
BseYI	CCCAGC	1 cut(s)	2120
BsgI	GTGCAG	2 cut(s)	906, 1961
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	6 cut(s)	65, 302, 475, 973, 1431, 2336
BshNI	GGYRCC	2 cut(s)	487, 1652
BshTI	ACCGGT	2 cut(s)	510, 1032
BsiHKAI	GWGCWC	2 cut(s)	148, 1261
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	9 cut(s)	349, 511, 599, 1033, 1493, 1539, 1926, 2219, 2311
BslFI	GGGAC	3 cut(s)	180, 365, 1346
BslI	CCNNNNNNNGG	4 cut(s)	31, 298, 1481, 1662
BsmAI	GTCTC	5 cut(s)	46, 127, 819, 1682, 1824
BsmFI	GGGAC	3 cut(s)	180, 365, 1346
BsnI	GGCC	6 cut(s)	65, 302, 475, 973, 1431, 2336
Bso31I	GGTCTC	2 cut(s)	46, 1682
BsoBI	CYCGRG	1 cut(s)	428
Bsp119I	TTCGAA	1 cut(s)	1234
Bsp1286I	GDGCHC	3 cut(s)	148, 415, 1261
Bsp143I	GATC	7 cut(s)	501, 1543, 1567, 1966, 2023, 2052, 2240
Bsp1720I	GCTNAGC	2 cut(s)	1143, 1851
BspACI	CCGC	6 cut(s)	115, 303, 1868, 2060, 2258, 2393
BspANI	GGCC	6 cut(s)	65, 302, 475, 973, 1431, 2336
BspCNI	CTCAG	7 cut(s)	131, 715, 955, 1162, 1579, 2137, 2336
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	8 cut(s)	465, 489, 1545, 1631, 1654, 1930, 2078, 2315
BspMI	ACCTGC	1 cut(s)	2096
BspPI	GGATC	5 cut(s)	1538, 1551, 1562, 2047, 2235
BspQI	GCTCTTC	2 cut(s)	292, 1209
BspT104I	TTCGAA	1 cut(s)	1234
BspT107I	GGYRCC	2 cut(s)	487, 1652
BspTI	CTTAAG	1 cut(s)	1277
BspTNI	GGTCTC	2 cut(s)	46, 1682
BsrBI	CCGCTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	1845
BsrFI	RCCGGY	3 cut(s)	510, 1032, 1925
BsrI	ACTGG	3 cut(s)	1334, 2276, 2390
BssAI	RCCGGY	3 cut(s)	510, 1032, 1925
BssECI	CCNNGG	7 cut(s)	30, 47, 974, 1539, 1661, 1765, 2292
BssMI	GATC	7 cut(s)	501, 1543, 1567, 1966, 2023, 2052, 2240
BssNI	GRCGYC	2 cut(s)	375, 384
BssSI	CACGAG	1 cut(s)	1071
BssT1I	CCWWGG	4 cut(s)	30, 47, 974, 1661
Bst2BI	CACGAG	1 cut(s)	1071
Bst2UI	CCWGG	3 cut(s)	402, 472, 1995
Bst4CI	ACNGT	6 cut(s)	460, 813, 1058, 1201, 1693, 1803
Bst6I	CTCTTC	2 cut(s)	292, 1209
BstACI	GRCGYC	2 cut(s)	375, 384
BstAFI	CTTAAG	1 cut(s)	1277
BstBAI	YACGTR	2 cut(s)	394, 1646
BstBI	TTCGAA	1 cut(s)	1234
BstC8I	GCNNGC	7 cut(s)	9, 38, 144, 638, 900, 1927, 2409
BstENI	CCTNNNNNAGG	1 cut(s)	1660
BstF5I	GGATG	9 cut(s)	187, 254, 769, 847, 1432, 1614, 1618, 1786, 2188
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	2 cut(s)	456, 1398
BstKTI	GATC	7 cut(s)	504, 1546, 1570, 1969, 2026, 2055, 2243
BstMAI	GTCTC	5 cut(s)	46, 127, 819, 1682, 1824
BstMBI	GATC	7 cut(s)	501, 1543, 1567, 1966, 2023, 2052, 2240
BstNI	CCWGG	3 cut(s)	402, 472, 1995
BstNSI	RCATGY	3 cut(s)	11, 88, 1025
BstSCI	CCNGG	5 cut(s)	348, 400, 470, 1538, 1993
BstSFI	CTRYAG	1 cut(s)	2128
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	6 cut(s)	298, 565, 907, 1919, 1962, 2129
BstV2I	GAAGAC	4 cut(s)	198, 692, 1278, 1687
BstX2I	RGATCY	2 cut(s)	1543, 1966
BstXI	CCANNNNNNTGG	1 cut(s)	1706
BstYI	RGATCY	2 cut(s)	1543, 1966
BsuI	GTATCC	1 cut(s)	1772
BsuRI	GGCC	6 cut(s)	65, 302, 475, 973, 1431, 2336
BtrI	CACGTC	1 cut(s)	2299
BtsCI	GGATG	9 cut(s)	187, 254, 769, 847, 1432, 1614, 1618, 1786, 2188
BtsI	GCAGTG	2 cut(s)	939, 2317
BtsIMutI	CAGTG	4 cut(s)	939, 1327, 2269, 2317
BveI	ACCTGC	1 cut(s)	2096
Cac8I	GCNNGC	7 cut(s)	9, 38, 144, 638, 900, 1927, 2409
CaiI	CAGNNNCTG	2 cut(s)	905, 1313
CfoI	GCGC	2 cut(s)	456, 1398
Cfr10I	RCCGGY	3 cut(s)	510, 1032, 1925
Cfr13I	GGNCC	2 cut(s)	971, 995
CseI	GACGC	2 cut(s)	91, 392
CsiI	ACCWGGT	1 cut(s)	1993
Csp6I	GTAC	3 cut(s)	1619, 1653, 2125
CspAI	ACCGGT	2 cut(s)	510, 1032
CviQI	GTAC	3 cut(s)	1619, 1653, 2125
DpnI	GATC	7 cut(s)	503, 1545, 1569, 1968, 2025, 2054, 2242
DpnII	GATC	7 cut(s)	501, 1543, 1567, 1966, 2023, 2052, 2240
DraI	TTTAAA	1 cut(s)	658
EaeI	YGGCCR	2 cut(s)	300, 473
Eam1104I	CTCTTC	2 cut(s)	292, 1209
EarI	CTCTTC	2 cut(s)	292, 1209
Ecl136II	GAGCTC	2 cut(s)	146, 1259
Eco130I	CCWWGG	4 cut(s)	30, 47, 974, 1661
Eco24I	GRGCYC	3 cut(s)	148, 415, 1261
Eco31I	GGTCTC	2 cut(s)	46, 1682
Eco32I	GATATC	1 cut(s)	1378
Eco47I	GGWCC	1 cut(s)	995
Eco53kI	GAGCTC	2 cut(s)	146, 1259
Eco57I	CTGAAG	3 cut(s)	1703, 1916, 1991
Eco72I	CACGTG	2 cut(s)	394, 1646
Eco88I	CYCGRG	1 cut(s)	428
EcoICRI	GAGCTC	2 cut(s)	146, 1259
EcoNI	CCTNNNNNAGG	1 cut(s)	1660
EcoRI	GAATTC	2 cut(s)	405, 2287
EcoRII	CCWGG	3 cut(s)	400, 470, 1993
EcoRV	GATATC	1 cut(s)	1378
EcoT14I	CCWWGG	4 cut(s)	30, 47, 974, 1661
EcoT22I	ATGCAT	1 cut(s)	655
EcoT38I	GRGCYC	3 cut(s)	148, 415, 1261
ErhI	CCWWGG	4 cut(s)	30, 47, 974, 1661
FalI	AAGNNNNNCTT	4 cut(s)	763, 795, 1228, 1260
FaqI	GGGAC	3 cut(s)	180, 365, 1346
FauI	CCCGC	4 cut(s)	122, 2067, 2251, 2386
FauNDI	CATATG	1 cut(s)	1725
FbaI	TGATCA	1 cut(s)	2023
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	7 cut(s)	303, 312, 579, 921, 1908, 1976, 2118
FokI	GGATG	9 cut(s)	174, 241, 776, 854, 1439, 1621, 1625, 1793, 2195
FriOI	GRGCYC	3 cut(s)	148, 415, 1261
Fsp4HI	GCNGC	7 cut(s)	303, 312, 579, 921, 1908, 1976, 2118
FspBI	CTAG	8 cut(s)	26, 803, 911, 1080, 1223, 1442, 1626, 1911
GlaI	GCGC	2 cut(s)	455, 1397
GluI	GCNGC	7 cut(s)	303, 312, 579, 921, 1908, 1976, 2118
GsaI	CCCAGC	1 cut(s)	2124
GsuI	CTGGAG	3 cut(s)	1275, 1290, 2407
HaeIII	GGCC	6 cut(s)	65, 302, 475, 973, 1431, 2336
HapII	CCGG	9 cut(s)	349, 511, 599, 1033, 1493, 1539, 1926, 2219, 2311
HgaI	GACGC	2 cut(s)	91, 392
HhaI	GCGC	2 cut(s)	456, 1398
Hin1I	GRCGYC	2 cut(s)	375, 384
Hin6I	GCGC	2 cut(s)	454, 1396
HinP1I	GCGC	2 cut(s)	454, 1396
HincII	GTYRAC	4 cut(s)	319, 382, 508, 538
HindII	GTYRAC	4 cut(s)	319, 382, 508, 538
HindIII	AAGCTT	4 cut(s)	1124, 1145, 1898, 2378
HinfI	GANTC	9 cut(s)	323, 431, 560, 671, 1112, 1364, 1515, 1532, 2006
HpaII	CCGG	9 cut(s)	349, 511, 599, 1033, 1493, 1539, 1926, 2219, 2311
HphI	GGTGA	2 cut(s)	862, 2300
Hpy166II	GTNNAC	4 cut(s)	319, 382, 508, 538
Hpy8I	GTNNAC	4 cut(s)	319, 382, 508, 538
Hpy99I	CGWCG	6 cut(s)	279, 320, 323, 377, 380, 568
HpyAV	CCTTC	8 cut(s)	223, 229, 274, 379, 1243, 1886, 1949, 2315
HpyCH4III	ACNGT	6 cut(s)	460, 813, 1058, 1201, 1693, 1803
HpyCH4IV	ACGT	6 cut(s)	375, 393, 709, 1645, 2276, 2298
HpySE526I	ACGT	6 cut(s)	375, 393, 709, 1645, 2276, 2298
Hsp92I	GRCGYC	2 cut(s)	375, 384
HspAI	GCGC	2 cut(s)	454, 1396
KpnI	GGTACC	1 cut(s)	1656
KroI	GCCGGC	1 cut(s)	1925
KroNI	GCCGGC	1 cut(s)	1927
Ksp22I	TGATCA	1 cut(s)	2023
Kzo9I	GATC	7 cut(s)	501, 1543, 1567, 1966, 2023, 2052, 2240
LguI	GCTCTTC	2 cut(s)	292, 1209
Lsp1109I	GCAGC	6 cut(s)	298, 565, 907, 1919, 1962, 2129
LweI	GCATC	6 cut(s)	688, 832, 1085, 1771, 2152, 2173
MabI	ACCWGGT	1 cut(s)	1993
MaeI	CTAG	8 cut(s)	26, 803, 911, 1080, 1223, 1442, 1626, 1911
MaeII	ACGT	6 cut(s)	375, 393, 709, 1645, 2276, 2298
MaeIII	GTNAC	4 cut(s)	1066, 1641, 1820, 2132
MalI	GATC	7 cut(s)	503, 1545, 1569, 1968, 2025, 2054, 2242
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	7 cut(s)	501, 1543, 1567, 1966, 2023, 2052, 2240
MfeI	CAATTG	1 cut(s)	1959
MflI	RGATCY	2 cut(s)	1543, 1966
MhlI	GDGCHC	3 cut(s)	148, 415, 1261
MlyI	GAGTC	5 cut(s)	440, 554, 665, 1106, 1373
MmeI	TCCRAC	4 cut(s)	429, 474, 546, 1113
Mph1103I	ATGCAT	1 cut(s)	655
MroNI	GCCGGC	1 cut(s)	1925
MroXI	GAANNNNTTC	3 cut(s)	1218, 1240, 1875
MseI	TTAA	7 cut(s)	555, 657, 783, 866, 1278, 1838, 2373
MslI	CAYNNNNRTG	3 cut(s)	89, 951, 1838
MspA1I	CMGCKG	1 cut(s)	2120
MspCI	CTTAAG	1 cut(s)	1277
MspI	CCGG	9 cut(s)	349, 511, 599, 1033, 1493, 1539, 1926, 2219, 2311
MspR9I	CCNGG	5 cut(s)	350, 402, 472, 1540, 1995
MunI	CAATTG	1 cut(s)	1959
MvaI	CCWGG	3 cut(s)	402, 472, 1995
MvnI	CGCG	1 cut(s)	102
NaeI	GCCGGC	1 cut(s)	1927
NciI	CCSGG	2 cut(s)	350, 1540
NdeI	CATATG	1 cut(s)	1725
NdeII	GATC	7 cut(s)	501, 1543, 1567, 1966, 2023, 2052, 2240
NgoMIV	GCCGGC	1 cut(s)	1925
NlaIV	GGNNCC	8 cut(s)	465, 489, 1545, 1631, 1654, 1930, 2078, 2315
NmuCI	GTSAC	1 cut(s)	1641
NsiI	ATGCAT	1 cut(s)	655
NspI	RCATGY	3 cut(s)	11, 88, 1025
NspV	TTCGAA	1 cut(s)	1234
PaeI	GCATGC	1 cut(s)	11
PaeR7I	CTCGAG	1 cut(s)	428
PaqCI	CACCTGC	1 cut(s)	2096
PciSI	GCTCTTC	2 cut(s)	292, 1209
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PdiI	GCCGGC	1 cut(s)	1927
PdmI	GAANNNNTTC	3 cut(s)	1218, 1240, 1875
PfeI	GAWTC	4 cut(s)	323, 1515, 1532, 2006
PflMI	CCANNNNNTGG	1 cut(s)	1481
PfoI	TCCNGGA	1 cut(s)	348
PinAI	ACCGGT	2 cut(s)	510, 1032
PkrI	GCNGC	7 cut(s)	304, 313, 580, 922, 1909, 1977, 2119
PleI	GAGTC	5 cut(s)	439, 554, 665, 1106, 1372
PmaCI	CACGTG	2 cut(s)	394, 1646
PmlI	CACGTG	2 cut(s)	394, 1646
PpsI	GAGTC	5 cut(s)	439, 554, 665, 1106, 1372
Ppu21I	YACGTR	2 cut(s)	394, 1646
Psp124BI	GAGCTC	2 cut(s)	148, 1261
Psp6I	CCWGG	3 cut(s)	400, 470, 1993
PspCI	CACGTG	2 cut(s)	394, 1646
PspFI	CCCAGC	1 cut(s)	2120
PspGI	CCWGG	3 cut(s)	400, 470, 1993
PspN4I	GGNNCC	8 cut(s)	465, 489, 1545, 1631, 1654, 1930, 2078, 2315
PspPI	GGNCC	2 cut(s)	971, 995
PspXI	VCTCGAGB	1 cut(s)	428
PstNI	CAGNNNCTG	2 cut(s)	905, 1313
PsuI	RGATCY	2 cut(s)	1543, 1966
PvuII	CAGCTG	1 cut(s)	2120
RsaI	GTAC	3 cut(s)	1620, 1654, 2126
RsaNI	GTAC	3 cut(s)	1619, 1653, 2125
RseI	CAYNNNNRTG	3 cut(s)	89, 951, 1838
SacI	GAGCTC	2 cut(s)	148, 1261
SalI	GTCGAC	1 cut(s)	317
SapI	GCTCTTC	2 cut(s)	292, 1209
SaqAI	TTAA	7 cut(s)	555, 657, 783, 866, 1278, 1838, 2373
SatI	GCNGC	7 cut(s)	303, 312, 579, 921, 1908, 1976, 2118
Sau3AI	GATC	7 cut(s)	501, 1543, 1567, 1966, 2023, 2052, 2240
Sau96I	GGNCC	2 cut(s)	971, 995
ScaI	AGTACT	1 cut(s)	1620
SchI	GAGTC	5 cut(s)	440, 554, 665, 1106, 1373
ScrFI	CCNGG	5 cut(s)	350, 402, 472, 1540, 1995
SduI	GDGCHC	3 cut(s)	148, 415, 1261
SexAI	ACCWGGT	1 cut(s)	1993
SfaNI	GCATC	6 cut(s)	688, 832, 1085, 1771, 2152, 2173
SfcI	CTRYAG	1 cut(s)	2128
Sfr274I	CTCGAG	1 cut(s)	428
SfuI	TTCGAA	1 cut(s)	1234
SgrDI	CGTCGACG	1 cut(s)	317
SinI	GGWCC	1 cut(s)	995
SlaI	CTCGAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	3 cut(s)	89, 951, 1838
SmlI	CTYRAG	5 cut(s)	137, 428, 758, 1260, 1277
SmoI	CTYRAG	5 cut(s)	137, 428, 758, 1260, 1277
SphI	GCATGC	1 cut(s)	11
SsiI	CCGC	6 cut(s)	115, 303, 1868, 2060, 2258, 2393
SspMI	CTAG	8 cut(s)	26, 803, 911, 1080, 1223, 1442, 1626, 1911
SstI	GAGCTC	2 cut(s)	148, 1261
StyD4I	CCNGG	5 cut(s)	348, 400, 470, 1538, 1993
StyI	CCWWGG	4 cut(s)	30, 47, 974, 1661
TaaI	ACNGT	6 cut(s)	460, 813, 1058, 1201, 1693, 1803
TaiI	ACGT	6 cut(s)	378, 396, 712, 1648, 2279, 2301
TaqI	TCGA	9 cut(s)	318, 357, 372, 409, 429, 1027, 1234, 1566, 1942
TatI	WGTACW	1 cut(s)	1618
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	4 cut(s)	323, 1515, 1532, 2006
Tru1I	TTAA	7 cut(s)	555, 657, 783, 866, 1278, 1838, 2373
Tru9I	TTAA	7 cut(s)	555, 657, 783, 866, 1278, 1838, 2373
TscAI	CASTG	4 cut(s)	939, 1334, 2276, 2324
TseFI	GTSAC	1 cut(s)	1641
TseI	GCWGC	6 cut(s)	311, 578, 920, 1907, 1975, 2117
Tsp45I	GTSAC	1 cut(s)	1641
TspDTI	ATGAA	7 cut(s)	17, 963, 1629, 1716, 1795, 1875, 2373
TspGWI	ACGGA	1 cut(s)	1997
TspRI	CASTG	4 cut(s)	939, 1334, 2276, 2324
Van91I	CCANNNNNTGG	1 cut(s)	1481
Vha464I	CTTAAG	1 cut(s)	1277
VpaK11BI	GGWCC	1 cut(s)	995
XagI	CCTNNNNNAGG	1 cut(s)	1660
XapI	RAATTY	8 cut(s)	42, 405, 821, 854, 1282, 1370, 1703, 2287
XbaI	TCTAGA	1 cut(s)	1222
XceI	RCATGY	3 cut(s)	11, 88, 1025
XhoI	CTCGAG	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	318
XmnI	GAANNNNTTC	3 cut(s)	1218, 1240, 1875
XspI	CTAG	8 cut(s)	26, 803, 911, 1080, 1223, 1442, 1626, 1911
ZraI	GACGTC	1 cut(s)	376
ZrmI	AGTACT	1 cut(s)	1620
Zsp2I	ATGCAT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.