Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004392

Physical Location & Seq

Genomic Coordinates Reverse (-)

21162711 .. 21169556

Gene Structure 6846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017783

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGAAGCATTCTCCTCCCTTAGCCTTTTTAGGCTTGCAAATTCCAAAGAGAGCCCTCTTGGCCGCTCTCCTTATATTCAACATGCTCATGGCAACTCGCGTCATTCTCTCCCGCTCAGTCTCCCCACTCCTCCTCAAGCGAGCTCCTTGTCCCCATTTTACCCCTAAACGATTACCCAAATCCCATCCCTGTCCCCTCTGGTCTTCTTCCTTCTCCTTCTGCCTCACTCTCCTCCCTAAACCCACACCCACATCCCCTCCCTTCAACTCCCGACGACGACCTCGCTCTTCCCTCTCAATGGCCGCCTCTGCTGCCGTCGACGAATCTCTCTCCTCCAATCCTCTCCTCCGGGACTTCGACTTCCCTCCCTTCGACGTCGTTGACGCCTCGCACGTGCGACCTGGAATTCGAGCCCTGTTGAAGAAGCTCGAGTCTGATTTGGAGGAGTTGGAGCGCACGGTGGAGCCTTCCTGGCCGAAGCTGGTGGTGCCGTTGGAGAAGATCCACTGGGAAAGATGCAAACCATTTCTTAGTGGAGTTGCCCTTGAGGATGATAAAAGAGAGGCTTTTAACAAAATTGAACAGGAACTAGAAAGACTGTCTCAAAAATTTGGGGAGAATGTTCTGGATGCCACAAAGAAATTTGAAAAGTTAATCACCGATAAGAAAGAAATTGATGGATTGCCAGCTACTGCTCTAGGATTGGCTGCACAAACAGCAGTGTCAAAGGGGCATGAAAATGCGACTGCTGAGAATGGGCCTTGGGTATTTACATTAGATGGTCCAAGTTTTCTCTCTGTTATGCAACATGCTCGAAACCGGTCTTTGCGTGAGGAAATATACCGTGCCTATGTAACTCGTGCATCTAGTGGAGAGCTGGATAATACTGCAATTATTGACTCAATCTTGAAGCTTAGGTTGGAAAAGGCTAAGCTTCTGAATTACAACAACTATGCTGAGGTAAGCATGGCAACCAAAATGGCTACTGTTGAAAAAGCAGAAGAGCTTCTAGAGAAACTTCGAAGTGCTTCTTGGAAGGCTGGAGTTCAAGATATGGAAGACCTTAAGAATTTCTGCAAAAGCCAAGATGCTCCAGAAGCTGATGATTTGAACCACTGGGACATTAGCTTTTGGAGTGAGAGGCTTCGGGAGTCCAAATTTGATATCAACGAGGAAGAATTGCGCCCCTATTTCTCCTTGCCAAAGGTTATGGATGGCCTGTTTAGCCTAGCGAACAAGATTTTTGGAATTGACATTGAACCAGCTGATGGTTTAGCTCCGGTTTGGAACAATGATGTTAGATTCTATCGTGTCAAAGATTCTTCTGGGGTTCCTATTGCATATTTTTACTTCGATCCCTATACTCGTCCATCTGAGAAAAGGGGAGGTGCGTGGATGGATGAAGTACTTGCTAGGAGCCGTGTATTGTCACGTGATGGTACCTCTCCAAGGTTGCCTGTGGCACACATGGTATGCAATCAATCACCACCAGTGGGAGACAAACCCAGCTTGATGACCTTCCGCGAGGTGGAGACCGTCTTCCATGAATTTGGTCATGCACTTCAGCATATGCTGACTAAGCAAGATGAGGGTCTTGTTGCTGGTATCCGAGGGGTAGAATGGGATGCTGTTGAATTGCCCTCGCAGTTCATGGAAAATTGGTGTTACCATAGAGACACTTTAATGAGCATTGCTAAGCATTATGAAACTGCGGAAACCCTTCCAGAAGAAGTATTCTTGAAGCTTCTTGCAGCTAGGACTTTTCGTGCCGGTTCCCTAAGCCTTCGACAGATAAGATTTGCAATTGTAGATCTGAAGCTGCACACAGATTACATACCTGGTGGGTCAGAATCCATTTATGATGTTGATCAGAGGGTTAGTGAAAAAACTCAAGTGATCCCTCCACTTCCAGAAGATAGGTTCCTCTGTGGTTTCAGCCATATCTTTGCAGGTGGATATGCAGCTGGGTACTATAGTTACAAGTGGGCTGAGGTCTTGTCTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATAGCAAGGCTGTAAAAGAAATCGGAAACAAGTTCCGAGAAACGATCCTTGCTCTTGGAGGGGGGAAAGCACCACTGGACGTTTTTGTGGAATTCCGAGGACGTGAGCCTTCACCAGAGCCACTGCTCAGGCACAATGGCCTATTACAAGTCGCTACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031974 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

735

Amino Acids

82.59

Weight (kDa)

6.16

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP_N	PF19310	136 - 203	1.6e-07	Neurolysin/Thimet oligopeptidase, N-terminal domain
Peptidase_M3	PF01432	267 - 727	8.5e-135	Peptidase family M3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10540 AT5G65620 AT5G65620
fragaria_vesca	FvH4_1g19050 FvH4_1g19050 FvH4_1g19050
malus_domestica	MD01G1044200.v1.1
prunus_persica	Prupe.6G167100_v2.0.a1 Prupe.6G167100_v2.0.a1 Prupe.6G209200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0110061 RchiOBHm_Chr7g0233391
rosa_laevigata	RLG00000001272 RLG00000017783
rosa_multiflora	Rmu_co8163522.1_g000001 Rmu_co8337137.1_g000001 Rmu_sc0008806.1_g000009 Rmu_sc0009935.1_g000003 Rmu_sc0013750.1_g000001 Rmu_sc0024311.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133750
rosa_rugosa	Rorug02G0165400 Rorug02G0165400
rosa_samantha	Rh2AG217200 Rh2BG227200 Rh2CG219400 Rh2DG222900 Rh7CG455700
rosa_wichuraiana	Rw0G010890 Rw2G016780 Rw7G035960 Rw7G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1940
AatII	GACGTC	1 cut(s)	378
Acc36I	ACCTGC	1 cut(s)	1940
Acc65I	GGTACC	1 cut(s)	1439
AccB1I	GGYRCC	2 cut(s)	487, 1439
AccB7I	CCANNNNNTGG	1 cut(s)	1268
AccBSI	CCGCTC	2 cut(s)	65, 114
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	2 cut(s)	99, 1524
AciI	CCGC	5 cut(s)	63, 112, 303, 1522, 1712
AclWI	GGATC	4 cut(s)	496, 1349, 1891, 2080
AcoI	YGGCCR	3 cut(s)	60, 300, 473
AcsI	RAATTY	8 cut(s)	39, 405, 608, 641, 1069, 1157, 1547, 2132
AcuI	CTGAAG	2 cut(s)	1547, 1835
AcvI	CACGTG	2 cut(s)	394, 1433
AcyI	GRCGYC	2 cut(s)	375, 384
AfaI	GTAC	3 cut(s)	1407, 1441, 1970
AfiI	CCNNNNNNNGG	5 cut(s)	298, 1268, 1449, 1493, 1528
AflII	CTTAAG	1 cut(s)	1064
AgeI	ACCGGT	1 cut(s)	819
AjiI	CACGTC	1 cut(s)	2144
AjnI	CCWGG	3 cut(s)	400, 470, 1837
AjuI	GAANNNNNNNTTGG	4 cut(s)	902, 934, 1015, 1047
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	5 cut(s)	124, 606, 1491, 1526, 1668
AlwI	GGATC	4 cut(s)	496, 1349, 1891, 2080
AlwNI	CAGNNNCTG	2 cut(s)	692, 1100
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	6 cut(s)	60, 300, 473, 758, 1216, 2179
ApeKI	GCWGC	5 cut(s)	311, 707, 1751, 1819, 1961
ApoI	RAATTY	8 cut(s)	39, 405, 608, 641, 1069, 1157, 1547, 2132
ArsI	GACNNNNNNTTYG	2 cut(s)	390, 422
AsiGI	ACCGGT	1 cut(s)	819
Asp700I	GAANNNNTTC	3 cut(s)	1005, 1027, 1719
Asp718I	GGTACC	1 cut(s)	1439
AspLEI	GCGC	2 cut(s)	456, 1185
AspS9I	GGNCC	2 cut(s)	758, 782
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	3 cut(s)	649, 1476, 2145
AsuII	TTCGAA	1 cut(s)	1021
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	782
BaeI	ACNNNNGTAYC	2 cut(s)	1960, 1993
BanI	GGYRCC	2 cut(s)	487, 1439
BanII	GRGCYC	3 cut(s)	55, 145, 415
BauI	CACGAG	1 cut(s)	858
BbrPI	CACGTG	2 cut(s)	394, 1433
BbsI	GAAGAC	3 cut(s)	195, 1065, 1531
Bbv12I	GWGCWC	1 cut(s)	145
BbvCI	CCTCAGC	2 cut(s)	957, 1989
BbvI	GCAGC	5 cut(s)	298, 694, 1763, 1806, 1973
BccI	CCATC	8 cut(s)	192, 671, 773, 1208, 1262, 1378, 1390, 1430
BceAI	ACGGC	3 cut(s)	299, 475, 1404
BcgI	CGANNNNNNTGC	2 cut(s)	794, 828
BciT130I	CCWGG	3 cut(s)	402, 472, 1839
BciVI	GTATCC	1 cut(s)	1616
BclI	TGATCA	1 cut(s)	1867
BcnI	CCSGG	1 cut(s)	350
BcoDI	GTCTC	5 cut(s)	124, 606, 1491, 1526, 1668
BfaI	CTAG	7 cut(s)	590, 698, 867, 1010, 1229, 1413, 1755
BfmI	CTRYAG	1 cut(s)	1972
BfrI	CTTAAG	1 cut(s)	1064
BfuAI	ACCTGC	1 cut(s)	1940
BfuI	GTATCC	1 cut(s)	1616
BglI	GCCNNNNNGGC	2 cut(s)	59, 472
BglII	AGATCT	1 cut(s)	1810
BisI	GCNGC	7 cut(s)	63, 303, 312, 708, 1752, 1820, 1962
BlpI	GCTNAGC	2 cut(s)	930, 1695
BlsI	GCNGC	7 cut(s)	64, 304, 313, 709, 1753, 1821, 1963
BmcAI	AGTACT	1 cut(s)	1407
Bme1390I	CCNGG	4 cut(s)	350, 402, 472, 1839
Bme18I	GGWCC	1 cut(s)	782
BmeT110I	CYCGRG	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	2144
BmgT120I	GGNCC	2 cut(s)	758, 782
BmiI	GGNNCC	7 cut(s)	465, 489, 1332, 1418, 1441, 1774, 1922
BmrFI	CCNGG	4 cut(s)	350, 402, 472, 1839
BmrI	ACTGGG	2 cut(s)	517, 1126
BmsI	GCATC	7 cut(s)	506, 619, 872, 1078, 1615, 1996, 2017
BmuI	ACTGGG	2 cut(s)	517, 1126
BpiI	GAAGAC	3 cut(s)	195, 1065, 1531
BpmI	CTGGAG	2 cut(s)	1062, 1077
Bpu10I	CCTNAGC	6 cut(s)	19, 914, 957, 1778, 1989, 2168
Bpu1102I	GCTNAGC	2 cut(s)	930, 1695
Bpu14I	TTCGAA	1 cut(s)	1021
BpuEI	CTTGAG	3 cut(s)	119, 566, 1875
BpuMI	CCSGG	1 cut(s)	350
BsaAI	YACGTR	2 cut(s)	394, 1433
BsaBI	GATNNNNATC	1 cut(s)	1866
BsaHI	GRCGYC	2 cut(s)	375, 384
BsaI	GGTCTC	1 cut(s)	1526
BsaJI	CCNNGG	4 cut(s)	761, 1448, 1609, 2137
BsaWI	WCCGGW	2 cut(s)	819, 1279
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	5 cut(s)	298, 1268, 1449, 1493, 1528
Bse118I	RCCGGY	2 cut(s)	819, 1769
Bse1I	ACTGG	4 cut(s)	512, 1121, 1490, 2121
Bse3DI	GCAATG	1 cut(s)	1689
Bse8I	GATNNNNATC	1 cut(s)	1866
BseBI	CCWGG	3 cut(s)	402, 472, 1839
BseDI	CCNNGG	4 cut(s)	761, 1448, 1609, 2137
BseGI	GGATG	9 cut(s)	184, 251, 556, 634, 1219, 1401, 1405, 1630, 2032
BseJI	GATNNNNATC	1 cut(s)	1866
BseLI	CCNNNNNNNGG	5 cut(s)	298, 1268, 1449, 1493, 1528
BseMI	GCAATG	1 cut(s)	1689
BseMII	CTCAG	6 cut(s)	129, 741, 948, 1365, 1980, 2182
BseNI	ACTGG	4 cut(s)	512, 1121, 1490, 2121
BseRI	GAGGAG	6 cut(s)	119, 122, 221, 322, 335, 458
BseXI	GCAGC	5 cut(s)	298, 694, 1763, 1806, 1973
BseYI	CCCAGC	2 cut(s)	1505, 1964
BsgI	GTGCAG	2 cut(s)	693, 1805
Bsh1236I	CGCG	2 cut(s)	99, 1524
BshFI	GGCC	6 cut(s)	62, 302, 475, 760, 1218, 2181
BshNI	GGYRCC	2 cut(s)	487, 1439
BshTI	ACCGGT	1 cut(s)	819
BsiHKAI	GWGCWC	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	4 cut(s)	349, 820, 1280, 1770
BslFI	GGGAC	4 cut(s)	135, 177, 365, 1133
BslI	CCNNNNNNNGG	5 cut(s)	298, 1268, 1449, 1493, 1528
BsmAI	GTCTC	5 cut(s)	124, 606, 1491, 1526, 1668
BsmFI	GGGAC	4 cut(s)	135, 177, 365, 1133
BsmI	GAATGC	1 cut(s)	7
BsnI	GGCC	6 cut(s)	62, 302, 475, 760, 1218, 2181
Bso31I	GGTCTC	1 cut(s)	1526
BsoBI	CYCGRG	1 cut(s)	428
Bsp119I	TTCGAA	1 cut(s)	1021
Bsp1286I	GDGCHC	3 cut(s)	55, 145, 415
Bsp143I	GATC	6 cut(s)	501, 1354, 1810, 1867, 1896, 2085
Bsp1720I	GCTNAGC	2 cut(s)	930, 1695
BspACI	CCGC	5 cut(s)	63, 112, 303, 1522, 1712
BspANI	GGCC	6 cut(s)	62, 302, 475, 760, 1218, 2181
BspCNI	CTCAG	6 cut(s)	128, 742, 949, 1366, 1981, 2181
BspFNI	CGCG	2 cut(s)	99, 1524
BspLI	GGNNCC	7 cut(s)	465, 489, 1332, 1418, 1441, 1774, 1922
BspMI	ACCTGC	1 cut(s)	1940
BspPI	GGATC	4 cut(s)	496, 1349, 1891, 2080
BspQI	GCTCTTC	2 cut(s)	292, 996
BspT104I	TTCGAA	1 cut(s)	1021
BspT107I	GGYRCC	2 cut(s)	487, 1439
BspTI	CTTAAG	1 cut(s)	1064
BspTNI	GGTCTC	1 cut(s)	1526
BsrBI	CCGCTC	2 cut(s)	65, 114
BsrDI	GCAATG	1 cut(s)	1689
BsrFI	RCCGGY	2 cut(s)	819, 1769
BsrI	ACTGG	4 cut(s)	512, 1121, 1490, 2121
BssAI	RCCGGY	2 cut(s)	819, 1769
BssECI	CCNNGG	4 cut(s)	761, 1448, 1609, 2137
BssMI	GATC	6 cut(s)	501, 1354, 1810, 1867, 1896, 2085
BssNI	GRCGYC	2 cut(s)	375, 384
BssSI	CACGAG	1 cut(s)	858
BssT1I	CCWWGG	2 cut(s)	761, 1448
Bst2BI	CACGAG	1 cut(s)	858
Bst2UI	CCWGG	3 cut(s)	402, 472, 1839
Bst4CI	ACNGT	5 cut(s)	460, 600, 845, 988, 1537
Bst6I	CTCTTC	2 cut(s)	292, 996
BstACI	GRCGYC	2 cut(s)	375, 384
BstAFI	CTTAAG	1 cut(s)	1064
BstBAI	YACGTR	2 cut(s)	394, 1433
BstBI	TTCGAA	1 cut(s)	1021
BstC8I	GCNNGC	3 cut(s)	35, 141, 687
BstENI	CCTNNNNNAGG	1 cut(s)	1447
BstF5I	GGATG	9 cut(s)	184, 251, 556, 634, 1219, 1401, 1405, 1630, 2032
BstFNI	CGCG	2 cut(s)	99, 1524
BstHHI	GCGC	2 cut(s)	456, 1185
BstKTI	GATC	6 cut(s)	504, 1357, 1813, 1870, 1899, 2088
BstMAI	GTCTC	5 cut(s)	124, 606, 1491, 1526, 1668
BstMBI	GATC	6 cut(s)	501, 1354, 1810, 1867, 1896, 2085
BstNI	CCWGG	3 cut(s)	402, 472, 1839
BstNSI	RCATGY	2 cut(s)	85, 812
BstSCI	CCNGG	4 cut(s)	348, 400, 470, 1837
BstSFI	CTRYAG	1 cut(s)	1972
BstUI	CGCG	2 cut(s)	99, 1524
BstV1I	GCAGC	5 cut(s)	298, 694, 1763, 1806, 1973
BstV2I	GAAGAC	3 cut(s)	195, 1065, 1531
BstX2I	RGATCY	2 cut(s)	501, 1810
BstXI	CCANNNNNNTGG	1 cut(s)	1550
BstYI	RGATCY	2 cut(s)	501, 1810
BsuI	GTATCC	1 cut(s)	1616
BsuRI	GGCC	6 cut(s)	62, 302, 475, 760, 1218, 2181
BtrI	CACGTC	1 cut(s)	2144
BtsCI	GGATG	9 cut(s)	184, 251, 556, 634, 1219, 1401, 1405, 1630, 2032
BtsI	GCAGTG	2 cut(s)	726, 2162
BtsIMutI	CAGTG	6 cut(s)	505, 726, 1114, 1497, 2114, 2162
BveI	ACCTGC	1 cut(s)	1940
Cac8I	GCNNGC	3 cut(s)	35, 141, 687
CaiI	CAGNNNCTG	2 cut(s)	692, 1100
CfoI	GCGC	2 cut(s)	456, 1185
Cfr10I	RCCGGY	2 cut(s)	819, 1769
Cfr13I	GGNCC	2 cut(s)	758, 782
CseI	GACGC	2 cut(s)	88, 392
CsiI	ACCWGGT	1 cut(s)	1837
Csp6I	GTAC	3 cut(s)	1406, 1440, 1969
CspAI	ACCGGT	1 cut(s)	819
CviQI	GTAC	3 cut(s)	1406, 1440, 1969
DpnI	GATC	6 cut(s)	503, 1356, 1812, 1869, 1898, 2087
DpnII	GATC	6 cut(s)	501, 1354, 1810, 1867, 1896, 2085
EaeI	YGGCCR	3 cut(s)	60, 300, 473
Eam1104I	CTCTTC	2 cut(s)	292, 996
EarI	CTCTTC	2 cut(s)	292, 996
Ecl136II	GAGCTC	1 cut(s)	143
Eco130I	CCWWGG	2 cut(s)	761, 1448
Eco24I	GRGCYC	3 cut(s)	55, 145, 415
Eco31I	GGTCTC	1 cut(s)	1526
Eco32I	GATATC	1 cut(s)	1165
Eco47I	GGWCC	1 cut(s)	782
Eco53kI	GAGCTC	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	1547, 1835
Eco72I	CACGTG	2 cut(s)	394, 1433
Eco88I	CYCGRG	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	143
EcoNI	CCTNNNNNAGG	1 cut(s)	1447
EcoRI	GAATTC	2 cut(s)	405, 2132
EcoRII	CCWGG	3 cut(s)	400, 470, 1837
EcoRV	GATATC	1 cut(s)	1165
EcoT14I	CCWWGG	2 cut(s)	761, 1448
EcoT38I	GRGCYC	3 cut(s)	55, 145, 415
ErhI	CCWWGG	2 cut(s)	761, 1448
FalI	AAGNNNNNCTT	4 cut(s)	550, 582, 1015, 1047
FaqI	GGGAC	4 cut(s)	135, 177, 365, 1133
FauI	CCCGC	1 cut(s)	119
FauNDI	CATATG	1 cut(s)	1569
FbaI	TGATCA	1 cut(s)	1867
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	7 cut(s)	63, 303, 312, 708, 1752, 1820, 1962
FokI	GGATG	9 cut(s)	171, 238, 563, 641, 1226, 1408, 1412, 1637, 2039
FriOI	GRGCYC	3 cut(s)	55, 145, 415
Fsp4HI	GCNGC	7 cut(s)	63, 303, 312, 708, 1752, 1820, 1962
FspBI	CTAG	7 cut(s)	590, 698, 867, 1010, 1229, 1413, 1755
GlaI	GCGC	2 cut(s)	455, 1184
GluI	GCNGC	7 cut(s)	63, 303, 312, 708, 1752, 1820, 1962
GsaI	CCCAGC	2 cut(s)	1509, 1968
GsuI	CTGGAG	2 cut(s)	1062, 1077
HaeIII	GGCC	6 cut(s)	62, 302, 475, 760, 1218, 2181
HapII	CCGG	4 cut(s)	349, 820, 1280, 1770
HgaI	GACGC	2 cut(s)	88, 392
HhaI	GCGC	2 cut(s)	456, 1185
Hin1I	GRCGYC	2 cut(s)	375, 384
Hin6I	GCGC	2 cut(s)	454, 1183
HinP1I	GCGC	2 cut(s)	454, 1183
HincII	GTYRAC	2 cut(s)	319, 382
HindII	GTYRAC	2 cut(s)	319, 382
HindIII	AAGCTT	3 cut(s)	911, 932, 1742
HinfI	GANTC	7 cut(s)	323, 431, 899, 1151, 1302, 1319, 1850
HpaII	CCGG	4 cut(s)	349, 820, 1280, 1770
HphI	GGTGA	3 cut(s)	649, 1476, 2145
Hpy166II	GTNNAC	2 cut(s)	319, 382
Hpy8I	GTNNAC	2 cut(s)	319, 382
Hpy99I	CGWCG	6 cut(s)	276, 279, 320, 323, 377, 380
HpyCH4III	ACNGT	5 cut(s)	460, 600, 845, 988, 1537
HpyCH4IV	ACGT	5 cut(s)	375, 393, 1432, 2121, 2143
HpySE526I	ACGT	5 cut(s)	375, 393, 1432, 2121, 2143
Hsp92I	GRCGYC	2 cut(s)	375, 384
HspAI	GCGC	2 cut(s)	454, 1183
KpnI	GGTACC	1 cut(s)	1443
Ksp22I	TGATCA	1 cut(s)	1867
Kzo9I	GATC	6 cut(s)	501, 1354, 1810, 1867, 1896, 2085
LguI	GCTCTTC	2 cut(s)	292, 996
LmnI	GCTCC	6 cut(s)	148, 451, 463, 1096, 1282, 1416
Lsp1109I	GCAGC	5 cut(s)	298, 694, 1763, 1806, 1973
LweI	GCATC	7 cut(s)	506, 619, 872, 1078, 1615, 1996, 2017
MabI	ACCWGGT	1 cut(s)	1837
MaeI	CTAG	7 cut(s)	590, 698, 867, 1010, 1229, 1413, 1755
MaeII	ACGT	5 cut(s)	375, 393, 1432, 2121, 2143
MaeIII	GTNAC	4 cut(s)	853, 1428, 1664, 1976
MalI	GATC	6 cut(s)	503, 1356, 1812, 1869, 1898, 2087
MbiI	CCGCTC	2 cut(s)	65, 114
MboI	GATC	6 cut(s)	501, 1354, 1810, 1867, 1896, 2085
MfeI	CAATTG	1 cut(s)	1803
MflI	RGATCY	2 cut(s)	501, 1810
MhlI	GDGCHC	3 cut(s)	55, 145, 415
MlyI	GAGTC	3 cut(s)	440, 893, 1160
MmeI	TCCRAC	3 cut(s)	429, 474, 900
MroXI	GAANNNNTTC	3 cut(s)	1005, 1027, 1719
MseI	TTAA	4 cut(s)	570, 653, 1065, 1682
MslI	CAYNNNNRTG	3 cut(s)	86, 738, 1682
MspA1I	CMGCKG	2 cut(s)	1265, 1964
MspCI	CTTAAG	1 cut(s)	1064
MspI	CCGG	4 cut(s)	349, 820, 1280, 1770
MspR9I	CCNGG	4 cut(s)	350, 402, 472, 1839
MunI	CAATTG	1 cut(s)	1803
Mva1269I	GAATGC	1 cut(s)	7
MvaI	CCWGG	3 cut(s)	402, 472, 1839
MvnI	CGCG	2 cut(s)	99, 1524
NciI	CCSGG	1 cut(s)	350
NdeI	CATATG	1 cut(s)	1569
NdeII	GATC	6 cut(s)	501, 1354, 1810, 1867, 1896, 2085
NlaIV	GGNNCC	7 cut(s)	465, 489, 1332, 1418, 1441, 1774, 1922
NmuCI	GTSAC	1 cut(s)	1428
NspI	RCATGY	2 cut(s)	85, 812
NspV	TTCGAA	1 cut(s)	1021
PaeR7I	CTCGAG	1 cut(s)	428
PaqCI	CACCTGC	1 cut(s)	1940
PciSI	GCTCTTC	2 cut(s)	292, 996
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PctI	GAATGC	1 cut(s)	7
PdmI	GAANNNNTTC	3 cut(s)	1005, 1027, 1719
PfeI	GAWTC	4 cut(s)	323, 1302, 1319, 1850
PflMI	CCANNNNNTGG	1 cut(s)	1268
PfoI	TCCNGGA	1 cut(s)	348
PinAI	ACCGGT	1 cut(s)	819
PkrI	GCNGC	7 cut(s)	64, 304, 313, 709, 1753, 1821, 1963
PleI	GAGTC	3 cut(s)	439, 893, 1159
PmaCI	CACGTG	2 cut(s)	394, 1433
PmlI	CACGTG	2 cut(s)	394, 1433
PpsI	GAGTC	3 cut(s)	439, 893, 1159
Ppu21I	YACGTR	2 cut(s)	394, 1433
Psp124BI	GAGCTC	1 cut(s)	145
Psp6I	CCWGG	3 cut(s)	400, 470, 1837
PspCI	CACGTG	2 cut(s)	394, 1433
PspFI	CCCAGC	2 cut(s)	1505, 1964
PspGI	CCWGG	3 cut(s)	400, 470, 1837
PspN4I	GGNNCC	7 cut(s)	465, 489, 1332, 1418, 1441, 1774, 1922
PspPI	GGNCC	2 cut(s)	758, 782
PspXI	VCTCGAGB	1 cut(s)	428
PstNI	CAGNNNCTG	2 cut(s)	692, 1100
PsuI	RGATCY	2 cut(s)	501, 1810
PvuII	CAGCTG	2 cut(s)	1265, 1964
RsaI	GTAC	3 cut(s)	1407, 1441, 1970
RsaNI	GTAC	3 cut(s)	1406, 1440, 1969
RseI	CAYNNNNRTG	3 cut(s)	86, 738, 1682
SacI	GAGCTC	1 cut(s)	145
SalI	GTCGAC	1 cut(s)	317
SapI	GCTCTTC	2 cut(s)	292, 996
SaqAI	TTAA	4 cut(s)	570, 653, 1065, 1682
SatI	GCNGC	7 cut(s)	63, 303, 312, 708, 1752, 1820, 1962
Sau3AI	GATC	6 cut(s)	501, 1354, 1810, 1867, 1896, 2085
Sau96I	GGNCC	2 cut(s)	758, 782
ScaI	AGTACT	1 cut(s)	1407
SchI	GAGTC	3 cut(s)	440, 893, 1160
ScrFI	CCNGG	4 cut(s)	350, 402, 472, 1839
SduI	GDGCHC	3 cut(s)	55, 145, 415
SexAI	ACCWGGT	1 cut(s)	1837
SfaNI	GCATC	7 cut(s)	506, 619, 872, 1078, 1615, 1996, 2017
SfcI	CTRYAG	1 cut(s)	1972
Sfr274I	CTCGAG	1 cut(s)	428
SfuI	TTCGAA	1 cut(s)	1021
SgrDI	CGTCGACG	1 cut(s)	317
SinI	GGWCC	1 cut(s)	782
SlaI	CTCGAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	3 cut(s)	86, 738, 1682
SmlI	CTYRAG	5 cut(s)	134, 428, 545, 1064, 1890
SmoI	CTYRAG	5 cut(s)	134, 428, 545, 1064, 1890
SsiI	CCGC	5 cut(s)	63, 112, 303, 1522, 1712
SspMI	CTAG	7 cut(s)	590, 698, 867, 1010, 1229, 1413, 1755
SstI	GAGCTC	1 cut(s)	145
StyD4I	CCNGG	4 cut(s)	348, 400, 470, 1837
StyI	CCWWGG	2 cut(s)	761, 1448
TaaI	ACNGT	5 cut(s)	460, 600, 845, 988, 1537
TaiI	ACGT	5 cut(s)	378, 396, 1435, 2124, 2146
TaqI	TCGA	9 cut(s)	318, 357, 372, 409, 429, 814, 1021, 1353, 1786
TatI	WGTACW	1 cut(s)	1405
TauI	GCSGC	2 cut(s)	65, 305
TfiI	GAWTC	4 cut(s)	323, 1302, 1319, 1850
Tru1I	TTAA	4 cut(s)	570, 653, 1065, 1682
Tru9I	TTAA	4 cut(s)	570, 653, 1065, 1682
TscAI	CASTG	6 cut(s)	512, 726, 1121, 1497, 2121, 2169
TseFI	GTSAC	1 cut(s)	1428
TseI	GCWGC	5 cut(s)	311, 707, 1751, 1819, 1961
Tsp45I	GTSAC	1 cut(s)	1428
TspDTI	ATGAA	6 cut(s)	17, 750, 1416, 1560, 1639, 1719
TspRI	CASTG	6 cut(s)	512, 726, 1121, 1497, 2121, 2169
Van91I	CCANNNNNTGG	1 cut(s)	1268
Vha464I	CTTAAG	1 cut(s)	1064
VpaK11BI	GGWCC	1 cut(s)	782
XagI	CCTNNNNNAGG	1 cut(s)	1447
XapI	RAATTY	8 cut(s)	39, 405, 608, 641, 1069, 1157, 1547, 2132
XbaI	TCTAGA	1 cut(s)	1009
XceI	RCATGY	2 cut(s)	85, 812
XhoI	CTCGAG	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	318
XmnI	GAANNNNTTC	3 cut(s)	1005, 1027, 1719
XspI	CTAG	7 cut(s)	590, 698, 867, 1010, 1229, 1413, 1755
ZraI	GACGTC	1 cut(s)	376
ZrmI	AGTACT	1 cut(s)	1407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.