Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013750.1

Orthogroup ID

OG0004392

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1757

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013750.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgaaattgactcaaagcaaagcaatttataaggccttcaaatctattcgagaatctcatgattgggagacaatgagcgatgcacggaaacgaatagttgaatggcatatcaaggagtcggacctggccggtatcaatcttgatgatgctaagagacagtatcttagagatattgaactgaaactagcagatcaatataaaaaatttgaggagaatgtgctagacgccacagaagcgactcaaatgctagttaccgaagtaggcaatgttatgggattggatattggtctacttcaggcggctgcggaacgagcaatattgaagggacatgaagatgcaacatctgaaaaggggccttggctattcactctcgaagattatgagcaaattcagacatatgctgaaaaccggtcttttcgtgaagaggtttacttagctcctgtaacttgtgtctcaaccggagatttaaataacactccagtcatcgagtcaattttgtcgctcagattgcagaaggctaagcttctgggttataataactatgccgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031974 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

183

Amino Acids

20.93

Weight (kDa)

5.04

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10540 AT5G65620 AT5G65620
fragaria_vesca	FvH4_1g19050 FvH4_1g19050 FvH4_1g19050
malus_domestica	MD01G1044200.v1.1
prunus_persica	Prupe.6G167100_v2.0.a1 Prupe.6G167100_v2.0.a1 Prupe.6G209200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0110061 RchiOBHm_Chr7g0233391
rosa_laevigata	RLG00000001272 RLG00000017783
rosa_multiflora	Rmu_co8163522.1_g000001 Rmu_co8337137.1_g000001 Rmu_sc0008806.1_g000009 Rmu_sc0009935.1_g000003 Rmu_sc0013750.1_g000001 Rmu_sc0024311.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133750
rosa_rugosa	Rorug02G0165400 Rorug02G0165400
rosa_samantha	Rh2AG217200 Rh2BG227200 Rh2CG219400 Rh2DG222900 Rh7CG455700
rosa_wichuraiana	Rw0G010890 Rw2G016780 Rw7G035960 Rw7G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	30, 534
AccI	GTMKAC	1 cut(s)	289
AciI	CCGC	2 cut(s)	299, 305
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	2 cut(s)	203, 387
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	225
AgeI	ACCGGT	1 cut(s)	408
AgsI	TTSAA	4 cut(s)	40, 101, 176, 322
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	2 cut(s)	437, 523
AluI	AGCT	2 cut(s)	437, 523
Alw26I	GTCTC	3 cut(s)	62, 148, 457
AoxI	GGCC	3 cut(s)	33, 126, 353
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	2 cut(s)	203, 387
AsiGI	ACCGGT	1 cut(s)	408
AspS9I	GGNCC	2 cut(s)	121, 353
AvaII	GGWCC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	289
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	1 cut(s)	125
BcoDI	GTCTC	3 cut(s)	62, 148, 457
BfaI	CTAG	3 cut(s)	185, 221, 248
BisI	GCNGC	2 cut(s)	300, 303
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	2 cut(s)	301, 304
Bme1390I	CCNGG	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	121, 353
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	3 cut(s)	70, 136, 325
BpmI	CTGGAG	1 cut(s)	462
Bpu1102I	GCTNAGC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	356
BsaWI	WCCGGW	2 cut(s)	408, 458
Bse118I	RCCGGY	2 cut(s)	128, 408
Bse1I	ACTGG	1 cut(s)	479
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	356
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	517
BseNI	ACTGG	1 cut(s)	479
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	3 cut(s)	35, 128, 355
BshTI	ACCGGT	1 cut(s)	408
BsiSI	CCGG	3 cut(s)	129, 409, 459
BslFI	GGGAC	1 cut(s)	339
BsmAI	GTCTC	3 cut(s)	62, 148, 457
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	3 cut(s)	35, 128, 355
Bsp143I	GATC	1 cut(s)	190
Bsp1720I	GCTNAGC	1 cut(s)	519
BspACI	CCGC	2 cut(s)	299, 305
BspANI	GGCC	3 cut(s)	35, 128, 355
BspCNI	CTCAG	1 cut(s)	516
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	271
BsrFI	RCCGGY	2 cut(s)	128, 408
BsrI	ACTGG	1 cut(s)	479
BssAI	RCCGGY	2 cut(s)	128, 408
BssECI	CCNNGG	1 cut(s)	356
BssMI	GATC	1 cut(s)	190
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	417
BstACI	GRCGYC	1 cut(s)	225
BstDEI	CTNAG	5 cut(s)	150, 164, 433, 503, 519
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	3 cut(s)	62, 148, 457
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 311, 508
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	35, 128, 355
BtgZI	GCGATG	1 cut(s)	93
CciI	TCATGA	1 cut(s)	58
Cfr10I	RCCGGY	2 cut(s)	128, 408
Cfr13I	GGNCC	2 cut(s)	121, 353
CseI	GACGC	1 cut(s)	233
CspAI	ACCGGT	1 cut(s)	408
CviAII	CATG	2 cut(s)	59, 329
CviJI	RGCY	8 cut(s)	35, 128, 302, 355, 361, 437, 518, 523
CviKI_1	RGCY	8 cut(s)	35, 128, 302, 355, 361, 437, 518, 523
DdeI	CTNAG	5 cut(s)	150, 164, 433, 503, 519
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
DraI	TTTAAA	1 cut(s)	468
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	356
Eco147I	AGGCCT	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	2 cut(s)	62, 332
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	2 cut(s)	58, 328
FauNDI	CATATG	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	300, 303
Fsp4HI	GCNGC	2 cut(s)	300, 303
FspBI	CTAG	3 cut(s)	185, 221, 248
GluI	GCNGC	2 cut(s)	300, 303
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	3 cut(s)	35, 128, 355
HapII	CCGG	3 cut(s)	129, 409, 459
HgaI	GACGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	62, 332
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	5 cut(s)	10, 53, 116, 238, 488
HpaII	CCGG	3 cut(s)	129, 409, 459
Hpy166II	GTNNAC	2 cut(s)	290, 430
Hpy188I	TCNGA	4 cut(s)	121, 346, 393, 506
Hpy188III	TCNNGA	5 cut(s)	50, 59, 140, 371, 419
Hpy8I	GTNNAC	2 cut(s)	290, 430
HpyAV	CCTTC	3 cut(s)	46, 316, 508
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4V	TGCA	3 cut(s)	83, 338, 511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 311, 508
HpyF3I	CTNAG	5 cut(s)	150, 164, 433, 503, 519
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	62, 332
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	9 cut(s)	110, 137, 142, 281, 422, 453, 472, 492, 512
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	3 cut(s)	70, 136, 325
MaeI	CTAG	3 cut(s)	185, 221, 248
MaeIII	GTNAC	2 cut(s)	250, 442
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	3 cut(s)	344, 386, 434
MluCI	AATT	5 cut(s)	5, 24, 203, 387, 492
MlyI	GAGTC	4 cut(s)	4, 125, 232, 497
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	2 cut(s)	202, 418
MseI	TTAA	1 cut(s)	467
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	3 cut(s)	129, 409, 459
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	3 cut(s)	233, 311, 508
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	2 cut(s)	62, 332
NlaIV	GGNNCC	1 cut(s)	354
PagI	TCATGA	1 cut(s)	58
PceI	AGGCCT	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	53
PinAI	ACCGGT	1 cut(s)	408
PkrI	GCNGC	2 cut(s)	301, 304
PleI	GAGTC	4 cut(s)	4, 124, 232, 496
PpsI	GAGTC	4 cut(s)	4, 124, 232, 496
PsiI	TTATAA	2 cut(s)	30, 534
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	121, 353
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	467
SatI	GCNGC	2 cut(s)	300, 303
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	2 cut(s)	121, 353
SchI	GAGTC	4 cut(s)	4, 125, 232, 497
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	4 cut(s)	126, 429, 439, 525
SfaNI	GCATC	3 cut(s)	70, 136, 325
SinI	GGWCC	1 cut(s)	121
SmiI	ATTTAAAT	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	333
Sse9I	AATT	5 cut(s)	5, 24, 203, 387, 492
SseBI	AGGCCT	1 cut(s)	35
SsiI	CCGC	2 cut(s)	299, 305
SspI	AATATT	1 cut(s)	318
SspMI	CTAG	3 cut(s)	185, 221, 248
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	356
SwaI	ATTTAAAT	1 cut(s)	468
TaaI	ACNGT	1 cut(s)	159
TaqI	TCGA	3 cut(s)	49, 372, 486
TasI	AATT	5 cut(s)	5, 24, 203, 387, 492
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	467
Tru9I	TTAA	1 cut(s)	467
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	2 cut(s)	17, 345
TspGWI	ACGGA	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	121
XapI	RAATTY	2 cut(s)	203, 387
XmiI	GTMKAC	1 cut(s)	289
XspI	CTAG	3 cut(s)	185, 221, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.