Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8163522.1

Orthogroup ID

OG0004392

Physical Location & Seq

Genomic Coordinates Reverse (-)

30 .. 665

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8163522.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

gtcatcgagtcaattttgtcgctcagattgcagaaggctaagcttctgggttataataactatgccgaggtaagcatgaaaacaaagtgtgctaccattgaaaaagcgaaaaatctgctagaagaactccaaaataagctttggaaagctggacttgaagagattgaagaacttaagcatattgctagagaacagaaagctgaagaagctgaggacttcaggccttgggacaccgccttttggacagaactgctacttgaaaccaaagttccaggctatcaggttcagtctcttttatctttgcgccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031974 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

103

Amino Acids

11.99

Weight (kDa)

5.51

Isoelectric Point (pI)

68.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10540 AT5G65620 AT5G65620
fragaria_vesca	FvH4_1g19050 FvH4_1g19050 FvH4_1g19050
malus_domestica	MD01G1044200.v1.1
prunus_persica	Prupe.6G167100_v2.0.a1 Prupe.6G167100_v2.0.a1 Prupe.6G209200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0110061 RchiOBHm_Chr7g0233391
rosa_laevigata	RLG00000001272 RLG00000017783
rosa_multiflora	Rmu_co8163522.1_g000001 Rmu_co8337137.1_g000001 Rmu_sc0008806.1_g000009 Rmu_sc0009935.1_g000003 Rmu_sc0013750.1_g000001 Rmu_sc0024311.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133750
rosa_rugosa	Rorug02G0165400 Rorug02G0165400
rosa_samantha	Rh2AG217200 Rh2BG227200 Rh2CG219400 Rh2DG222900 Rh7CG455700
rosa_wichuraiana	Rw0G010890 Rw2G016780 Rw7G035960 Rw7G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
AciI	CCGC	1 cut(s)	234
AcuI	CTGAAG	2 cut(s)	202, 222
AfiI	CCNNNNNNNGG	1 cut(s)	240
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	4 cut(s)	101, 158, 167, 260
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	5 cut(s)	43, 139, 149, 200, 209
AluI	AGCT	5 cut(s)	43, 139, 149, 200, 209
Alw26I	GTCTC	1 cut(s)	294
AoxI	GGCC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	306
BbvCI	CCTCAGC	1 cut(s)	210
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	2 cut(s)	119, 186
BfrI	CTTAAG	1 cut(s)	173
BlpI	GCTNAGC	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	66, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	66, 224
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	2 cut(s)	37, 201
BshFI	GGCC	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	223
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	2 cut(s)	36, 202
BspTI	CTTAAG	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	66, 224
BssT1I	CCWWGG	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	273
Bst6I	CTCTTC	1 cut(s)	153
BstAFI	CTTAAG	1 cut(s)	173
BstDEI	CTNAG	3 cut(s)	23, 39, 210
BstHHI	GCGC	1 cut(s)	306
BstMAI	GTCTC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 206
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	223
CfoI	GCGC	1 cut(s)	306
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	8 cut(s)	38, 43, 139, 149, 200, 209, 223, 276
CviKI_1	RGCY	8 cut(s)	38, 43, 139, 149, 200, 209, 223, 276
DdeI	CTNAG	3 cut(s)	23, 39, 210
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	224
Eco147I	AGGCCT	1 cut(s)	223
Eco57I	CTGAAG	2 cut(s)	202, 222
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	1 cut(s)	79
FaiI	YATR	4 cut(s)	54, 63, 77, 180
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	1 cut(s)	75
FspBI	CTAG	2 cut(s)	119, 186
GlaI	GCGC	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	223
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HindIII	AAGCTT	2 cut(s)	41, 137
HinfI	GANTC	1 cut(s)	8
Hpy188I	TCNGA	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	28
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 206
HpyF3I	CTNAG	3 cut(s)	23, 39, 210
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	304
LpnPI	CCDG	6 cut(s)	32, 135, 205, 258, 266, 285
MaeI	CTAG	2 cut(s)	119, 186
MboII	GAAGA	4 cut(s)	134, 170, 179, 215
MluCI	AATT	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	2 cut(s)	61, 205
MseI	TTAA	1 cut(s)	174
MspCI	CTTAAG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	28, 206
NlaIII	CATG	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	223
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PsiI	TTATAA	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	174
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	7 cut(s)	45, 72, 141, 151, 202, 211, 285
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	1 cut(s)	12
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	2 cut(s)	119, 186
StuI	AGGCCT	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	224
TaqI	TCGA	1 cut(s)	6
TasI	AATT	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	92
Vha464I	CTTAAG	1 cut(s)	173
XspI	CTAG	2 cut(s)	119, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.