Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004392

Physical Location & Seq

Genomic Coordinates Reverse (-)

22133487 .. 22140506

Gene Structure 7020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG227200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2364 bp

ATGGCTATTGTTCTCCCACACTACATGCATGCACCCCTCTCCAAGTTTTTATGTAAAAGAAATAAAAACAAAATGAAGCATGCTCCTCCCTTAGCCTTGGGCTTGCAAATTCCAAAGAGAGCCCTATTGGTCTCTCTGCTTATATTCAACATGCTCATGGCAACTCGCGTCATTCTCTCCCGCTCAGTCTCCCCACTCCTCCTCAAGCGAGCTCCTTATCCCCATTTTACCCCTAAACGCTTACCCAAATCCCATCCCTGTCCCCTCTGGTCTTCTTCCTTCTCCTTCTGCCTCACTCTCCTCCCTAAACCCACCCCCACATCCCCTCCCTTCAGCTCCCGACGACCTCGCTCTTCCCTCTCAATGGCCGCCTCTGCTGCCGTCGACGAATCTCTCTCCTCCAATCCTCTCCTCCGGGACTTCGACTTCCCTCCCTTCGACGTCGTTGACGCCTCGCACGTGCGACCTGGAATTCGAGCCCTATTGAAGAAGCTCGAGTCTGATTTGGAGGAGTTGGAGCGCACGGTGGAGCCTAACTGGCCGAAGCTGGTGGTGCCGTTGGAGAAGATCGTTGACCCGTTGACTGTGGTTTGGGGAGTAGTCAACCACCTCAAAGCTGTTAAGGACTCGTCGGAGCTTCGTGCTGCTATTGAAGAAGTGCAACCGGAGAAAGTGAAGTTTTATCTTAGGTTGGGACAAAGCAAGCCGATTTACAATGCGTTTAAAGCAATTCAAGACTCTCCTGATTGGAAGACATTGAGTGATGCTCAGAAACGTATAGTTGAAAACCAAATAAAGGAGGCAGTTCTTAGTGGAGTTGCCCTTGAGGATGATAAAAGAGAGGCTTTTAACAAAATTGAACAGGAACTAGAAAGACTGTCTCAAAAATTTGGGGAGAATGTTCTGGATGCCACAAAGAAATTTGAAAAGTTAATCACCGATAAGAAAGAAATTGATGGATTGCCAGCTACTGCTCTAGGATTGGCTGCACAAACAGCAGGGTCAAAGGGGCATGAAAATGCGACTGCTGAGAATGGGCCTTGGGTATTTACATTAGATGGTCCAAGTTTTCTCTCTGTTATGCAACATGCTCGAAACCGGTCTTTGCGTGAGGAAATATACCGTGCTTATGTAACTCGTGCATCTAGTGGAGAGCTGGATAATACTGCAATTATTGACTCCATCTTGAAGCTTAGGTTGGAAAAGGCTAAGCTTCTGAATTACAGCAACTATGCTGAGGTAAGCATGGCATCCAAAATGGCTACTGTTGAAAAAGCAGAAGAGCTTCTAGAGAAACTTCGAATTGCTTCTTGGAAGGCTGGAGTTCAAGATATGGAAGACCTTAAGAATTTCTGCAAAAGCCAAGATGCTCCAGAAGCTGATGATTTGAACCACTGGGACATTAGCTTTTGGAGTGAGAGGCTTCGGGAGTCCAAATTTGATATCAACGAGGAAGAATTGCGCCCCTATTTCTCCTTGCCAAAGGTTATGGATGGCCTGTTTAGCCTAGCGAACAAGATTTTTGGAATTGACATTGAACCAGCCGATGGTTTAGCTCCGGTTTGGAACAATGATGTTAGATTCTATCGTGTCAAAGATTCTTCTGGGGATCCTATTGCATATTTTTACTTCGATCCCTATACTCGTCCATCTGAGAAAAGGGGAGGTGCGTGGATGGATGAAGTACTTGCTAGGAGCCGTGTATTGTCACGTGATGGTACCTCTCCAAGGTTGCCTGTGGCACACATGGTATGCAATCAATCACCACCAGTGGGAGACAAACCCAGCTTGATGACCTTCCGCGAGGTTGAGACCGTCTTCCATGAATTTGGTCATGCACTTCAGCATATGCTGACTAAGCAAGATGAGGGTCTTGTTGCTGGTATCCGAGGGGTAGAGTGGGATGCTGTTGAATTGCCCTCACAGTTCATGGAAAATTGGTGTTACCACAGAGACACTTTAATGAGCATTGCTAAGCATTATGAAACTGCGGAAACCCTTCCAGAAGAAGTATTCCTGAAGCTTCTTGCAGCTAGGACTTTTCGTGCCGGCTCCCTAAGCCTTCGACAGATAAGATTTGCAATTGTAGATCTGAAGCTGCACACAGATTACATACCTGGTGGGTCAGAATCCATTTATGATGTTGATCAGAGGGTTAGTGAAAAAACACAAGTGATCCCCCCACTTCCAGAAGATAGGTTCCTTTGTGGTTTCAGCCATATCTTTGCAGGTGGATATGCAGCTGGGTACTATAGTTACAAGGTATGTCTTATTCTGATGGTCAAGTCTTTCCCCAGCTCAAGTTTATTCAGCGATCAGAGATTTGTTAATTATTTTATTATCTCCAGTAATTTGTGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031974 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

787

Amino Acids

89.02

Weight (kDa)

7.03

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP_N	PF19310	158 - 280	1.9e-56	Neurolysin/Thimet oligopeptidase, N-terminal domain
Peptidase_M3	PF01432	360 - 754	5.3e-114	Peptidase family M3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10540 AT5G65620 AT5G65620
fragaria_vesca	FvH4_1g19050 FvH4_1g19050 FvH4_1g19050
malus_domestica	MD01G1044200.v1.1
prunus_persica	Prupe.6G167100_v2.0.a1 Prupe.6G167100_v2.0.a1 Prupe.6G209200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0110061 RchiOBHm_Chr7g0233391
rosa_laevigata	RLG00000001272 RLG00000017783
rosa_multiflora	Rmu_co8163522.1_g000001 Rmu_co8337137.1_g000001 Rmu_sc0008806.1_g000009 Rmu_sc0009935.1_g000003 Rmu_sc0013750.1_g000001 Rmu_sc0024311.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133750
rosa_rugosa	Rorug02G0165400 Rorug02G0165400
rosa_samantha	Rh2AG217200 Rh2BG227200 Rh2CG219400 Rh2DG222900 Rh7CG455700
rosa_wichuraiana	Rw0G010890 Rw2G016780 Rw7G035960 Rw7G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2219
AatII	GACGTC	1 cut(s)	444
Acc36I	ACCTGC	1 cut(s)	2219
Acc65I	GGTACC	1 cut(s)	1718
AccB1I	GGYRCC	2 cut(s)	553, 1718
AccB7I	CCANNNNNTGG	1 cut(s)	1547
AccBSI	CCGCTC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	2 cut(s)	168, 1803
AciI	CCGC	4 cut(s)	181, 369, 1801, 1991
AclWI	GGATC	4 cut(s)	1604, 1617, 1628, 2170
AcoI	YGGCCR	2 cut(s)	366, 539
AcsI	RAATTY	7 cut(s)	108, 471, 887, 920, 1348, 1436, 1826
AcuI	CTGAAG	4 cut(s)	316, 1826, 2039, 2114
AcvI	CACGTG	2 cut(s)	460, 1712
AcyI	GRCGYC	2 cut(s)	441, 450
AfaI	GTAC	3 cut(s)	1686, 1720, 2249
AfiI	CCNNNNNNNGG	5 cut(s)	364, 796, 1547, 1728, 1772
AflII	CTTAAG	1 cut(s)	1343
AgeI	ACCGGT	1 cut(s)	1098
AjnI	CCWGG	2 cut(s)	466, 2116
AjuI	GAANNNNNNNTTGG	4 cut(s)	1181, 1213, 1294, 1326
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	6 cut(s)	136, 193, 885, 1770, 1805, 1947
AlwI	GGATC	4 cut(s)	1604, 1617, 1628, 2170
AlwNI	CAGNNNCTG	2 cut(s)	971, 1379
Ama87I	CYCGRG	1 cut(s)	494
AoxI	GGCC	4 cut(s)	366, 539, 1037, 1495
ApeKI	GCWGC	6 cut(s)	377, 644, 986, 2030, 2098, 2240
ApoI	RAATTY	7 cut(s)	108, 471, 887, 920, 1348, 1436, 1826
ArsI	GACNNNNNNTTYG	2 cut(s)	456, 488
AsiGI	ACCGGT	1 cut(s)	1098
Asp700I	GAANNNNTTC	3 cut(s)	1284, 1306, 1998
Asp718I	GGTACC	1 cut(s)	1718
AspLEI	GCGC	2 cut(s)	522, 1464
AspS9I	GGNCC	2 cut(s)	1037, 1061
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	2 cut(s)	928, 1755
AsuII	TTCGAA	1 cut(s)	1300
AvaI	CYCGRG	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	1061
BaeI	ACNNNNGTAYC	2 cut(s)	2239, 2272
BamHI	GGATCC	1 cut(s)	1609
BanI	GGYRCC	2 cut(s)	553, 1718
BanII	GRGCYC	3 cut(s)	124, 214, 481
BauI	CACGAG	1 cut(s)	1137
BbrPI	CACGTG	2 cut(s)	460, 1712
BbsI	GAAGAC	4 cut(s)	264, 758, 1344, 1810
Bbv12I	GWGCWC	1 cut(s)	214
BbvCI	CCTCAGC	1 cut(s)	1236
BbvI	GCAGC	6 cut(s)	364, 631, 973, 2042, 2085, 2252
BceAI	ACGGC	3 cut(s)	365, 541, 1683
BcgI	CGANNNNNNTGC	2 cut(s)	1073, 1107
BciT130I	CCWGG	2 cut(s)	468, 2118
BciVI	GTATCC	1 cut(s)	1895
BclI	TGATCA	1 cut(s)	2146
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	6 cut(s)	136, 193, 885, 1770, 1805, 1947
BfaI	CTAG	7 cut(s)	869, 977, 1146, 1289, 1508, 1692, 2034
BfmI	CTRYAG	1 cut(s)	2251
BfrI	CTTAAG	1 cut(s)	1343
BfuAI	ACCTGC	1 cut(s)	2219
BfuI	GTATCC	1 cut(s)	1895
BglI	GCCNNNNNGGC	1 cut(s)	538
BglII	AGATCT	1 cut(s)	2089
BisI	GCNGC	7 cut(s)	369, 378, 645, 987, 2031, 2099, 2241
BlpI	GCTNAGC	2 cut(s)	1209, 1974
BlsI	GCNGC	7 cut(s)	370, 379, 646, 988, 2032, 2100, 2242
BmcAI	AGTACT	1 cut(s)	1686
Bme1390I	CCNGG	3 cut(s)	416, 468, 2118
Bme18I	GGWCC	1 cut(s)	1061
BmeT110I	CYCGRG	1 cut(s)	494
BmgT120I	GGNCC	2 cut(s)	1037, 1061
BmiI	GGNNCC	7 cut(s)	531, 555, 1611, 1697, 1720, 2053, 2201
BmrFI	CCNGG	3 cut(s)	416, 468, 2118
BmrI	ACTGGG	1 cut(s)	1405
BmsI	GCATC	6 cut(s)	754, 898, 1151, 1259, 1357, 1894
BmuI	ACTGGG	1 cut(s)	1405
BpiI	GAAGAC	4 cut(s)	264, 758, 1344, 1810
BplI	GAGNNNNNCTC	2 cut(s)	751, 783
BpmI	CTGGAG	3 cut(s)	1341, 1356, 2329
Bpu10I	CCTNAGC	4 cut(s)	91, 1193, 1236, 2057
Bpu1102I	GCTNAGC	2 cut(s)	1209, 1974
Bpu14I	TTCGAA	1 cut(s)	1300
BpuEI	CTTGAG	3 cut(s)	188, 845, 2284
BpuMI	CCSGG	1 cut(s)	416
BsaAI	YACGTR	2 cut(s)	460, 1712
BsaBI	GATNNNNATC	1 cut(s)	2145
BsaHI	GRCGYC	2 cut(s)	441, 450
BsaI	GGTCTC	2 cut(s)	136, 1805
BsaJI	CCNNGG	4 cut(s)	96, 1040, 1727, 1888
BsaWI	WCCGGW	3 cut(s)	664, 1098, 1558
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	5 cut(s)	364, 796, 1547, 1728, 1772
Bse118I	RCCGGY	2 cut(s)	1098, 2048
Bse1I	ACTGG	4 cut(s)	542, 1400, 1769, 2346
Bse3DI	GCAATG	1 cut(s)	1968
Bse8I	GATNNNNATC	1 cut(s)	2145
BseBI	CCWGG	2 cut(s)	468, 2118
BseDI	CCNNGG	4 cut(s)	96, 1040, 1727, 1888
BseGI	GGATG	9 cut(s)	253, 320, 835, 913, 1250, 1498, 1680, 1684, 1909
BseJI	GATNNNNATC	1 cut(s)	2145
BseLI	CCNNNNNNNGG	5 cut(s)	364, 796, 1547, 1728, 1772
BseMI	GCAATG	1 cut(s)	1968
BseMII	CTCAG	5 cut(s)	198, 782, 1020, 1227, 1644
BseNI	ACTGG	4 cut(s)	542, 1400, 1769, 2346
BseRI	GAGGAG	7 cut(s)	75, 188, 191, 290, 388, 401, 524
BseXI	GCAGC	6 cut(s)	364, 631, 973, 2042, 2085, 2252
BseYI	CCCAGC	3 cut(s)	1784, 2243, 2294
BsgI	GTGCAG	2 cut(s)	972, 2084
Bsh1236I	CGCG	2 cut(s)	168, 1803
BshFI	GGCC	4 cut(s)	368, 541, 1039, 1497
BshNI	GGYRCC	2 cut(s)	553, 1718
BshTI	ACCGGT	1 cut(s)	1098
BsiHKAI	GWGCWC	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	494
BsiSI	CCGG	5 cut(s)	415, 665, 1099, 1559, 2049
BslFI	GGGAC	4 cut(s)	246, 431, 708, 1412
BslI	CCNNNNNNNGG	5 cut(s)	364, 796, 1547, 1728, 1772
BsmAI	GTCTC	6 cut(s)	136, 193, 885, 1770, 1805, 1947
BsmFI	GGGAC	4 cut(s)	246, 431, 708, 1412
BsnI	GGCC	4 cut(s)	368, 541, 1039, 1497
Bso31I	GGTCTC	2 cut(s)	136, 1805
BsoBI	CYCGRG	1 cut(s)	494
Bsp119I	TTCGAA	1 cut(s)	1300
Bsp1286I	GDGCHC	3 cut(s)	124, 214, 481
Bsp143I	GATC	7 cut(s)	567, 1609, 1633, 2089, 2146, 2175, 2314
Bsp1720I	GCTNAGC	2 cut(s)	1209, 1974
BspACI	CCGC	4 cut(s)	181, 369, 1801, 1991
BspANI	GGCC	4 cut(s)	368, 541, 1039, 1497
BspCNI	CTCAG	5 cut(s)	197, 781, 1021, 1228, 1645
BspFNI	CGCG	2 cut(s)	168, 1803
BspLI	GGNNCC	7 cut(s)	531, 555, 1611, 1697, 1720, 2053, 2201
BspMI	ACCTGC	1 cut(s)	2219
BspPI	GGATC	4 cut(s)	1604, 1617, 1628, 2170
BspQI	GCTCTTC	2 cut(s)	358, 1275
BspT104I	TTCGAA	1 cut(s)	1300
BspT107I	GGYRCC	2 cut(s)	553, 1718
BspTI	CTTAAG	1 cut(s)	1343
BspTNI	GGTCTC	2 cut(s)	136, 1805
BsrBI	CCGCTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	1968
BsrFI	RCCGGY	2 cut(s)	1098, 2048
BsrI	ACTGG	4 cut(s)	542, 1400, 1769, 2346
BssAI	RCCGGY	2 cut(s)	1098, 2048
BssECI	CCNNGG	4 cut(s)	96, 1040, 1727, 1888
BssMI	GATC	7 cut(s)	567, 1609, 1633, 2089, 2146, 2175, 2314
BssNI	GRCGYC	2 cut(s)	441, 450
BssSI	CACGAG	1 cut(s)	1137
BssT1I	CCWWGG	3 cut(s)	96, 1040, 1727
Bst2BI	CACGAG	1 cut(s)	1137
Bst2UI	CCWGG	2 cut(s)	468, 2118
Bst4CI	ACNGT	7 cut(s)	526, 586, 879, 1124, 1267, 1816, 1926
Bst6I	CTCTTC	2 cut(s)	358, 1275
BstACI	GRCGYC	2 cut(s)	441, 450
BstAFI	CTTAAG	1 cut(s)	1343
BstBAI	YACGTR	2 cut(s)	460, 1712
BstBI	TTCGAA	1 cut(s)	1300
BstC8I	GCNNGC	7 cut(s)	30, 81, 104, 210, 704, 966, 2050
BstENI	CCTNNNNNAGG	1 cut(s)	1726
BstF5I	GGATG	9 cut(s)	253, 320, 835, 913, 1250, 1498, 1680, 1684, 1909
BstFNI	CGCG	2 cut(s)	168, 1803
BstHHI	GCGC	2 cut(s)	522, 1464
BstKTI	GATC	7 cut(s)	570, 1612, 1636, 2092, 2149, 2178, 2317
BstMAI	GTCTC	6 cut(s)	136, 193, 885, 1770, 1805, 1947
BstMBI	GATC	7 cut(s)	567, 1609, 1633, 2089, 2146, 2175, 2314
BstNI	CCWGG	2 cut(s)	468, 2118
BstNSI	RCATGY	5 cut(s)	28, 32, 83, 154, 1091
BstSCI	CCNGG	3 cut(s)	414, 466, 2116
BstSFI	CTRYAG	1 cut(s)	2251
BstUI	CGCG	2 cut(s)	168, 1803
BstV1I	GCAGC	6 cut(s)	364, 631, 973, 2042, 2085, 2252
BstV2I	GAAGAC	4 cut(s)	264, 758, 1344, 1810
BstX2I	RGATCY	2 cut(s)	1609, 2089
BstXI	CCANNNNNNTGG	1 cut(s)	1829
BstYI	RGATCY	2 cut(s)	1609, 2089
BsuI	GTATCC	1 cut(s)	1895
BsuRI	GGCC	4 cut(s)	368, 541, 1039, 1497
BtsCI	GGATG	9 cut(s)	253, 320, 835, 913, 1250, 1498, 1680, 1684, 1909
BtsIMutI	CAGTG	2 cut(s)	1393, 1776
BveI	ACCTGC	1 cut(s)	2219
Cac8I	GCNNGC	7 cut(s)	30, 81, 104, 210, 704, 966, 2050
CaiI	CAGNNNCTG	2 cut(s)	971, 1379
CfoI	GCGC	2 cut(s)	522, 1464
Cfr10I	RCCGGY	2 cut(s)	1098, 2048
Cfr13I	GGNCC	2 cut(s)	1037, 1061
CseI	GACGC	2 cut(s)	157, 458
CsiI	ACCWGGT	1 cut(s)	2116
Csp6I	GTAC	3 cut(s)	1685, 1719, 2248
CspAI	ACCGGT	1 cut(s)	1098
CviQI	GTAC	3 cut(s)	1685, 1719, 2248
DpnI	GATC	7 cut(s)	569, 1611, 1635, 2091, 2148, 2177, 2316
DpnII	GATC	7 cut(s)	567, 1609, 1633, 2089, 2146, 2175, 2314
DraI	TTTAAA	1 cut(s)	724
EaeI	YGGCCR	2 cut(s)	366, 539
Eam1104I	CTCTTC	2 cut(s)	358, 1275
EarI	CTCTTC	2 cut(s)	358, 1275
Ecl136II	GAGCTC	1 cut(s)	212
Eco130I	CCWWGG	3 cut(s)	96, 1040, 1727
Eco24I	GRGCYC	3 cut(s)	124, 214, 481
Eco31I	GGTCTC	2 cut(s)	136, 1805
Eco32I	GATATC	1 cut(s)	1444
Eco47I	GGWCC	1 cut(s)	1061
Eco53kI	GAGCTC	1 cut(s)	212
Eco57I	CTGAAG	4 cut(s)	316, 1826, 2039, 2114
Eco72I	CACGTG	2 cut(s)	460, 1712
Eco88I	CYCGRG	1 cut(s)	494
EcoICRI	GAGCTC	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	1726
EcoRI	GAATTC	1 cut(s)	471
EcoRII	CCWGG	2 cut(s)	466, 2116
EcoRV	GATATC	1 cut(s)	1444
EcoT14I	CCWWGG	3 cut(s)	96, 1040, 1727
EcoT22I	ATGCAT	1 cut(s)	30
EcoT38I	GRGCYC	3 cut(s)	124, 214, 481
ErhI	CCWWGG	3 cut(s)	96, 1040, 1727
FalI	AAGNNNNNCTT	2 cut(s)	829, 861
FaqI	GGGAC	4 cut(s)	246, 431, 708, 1412
FauI	CCCGC	1 cut(s)	188
FauNDI	CATATG	1 cut(s)	1848
FbaI	TGATCA	1 cut(s)	2146
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	7 cut(s)	369, 378, 645, 987, 2031, 2099, 2241
FokI	GGATG	9 cut(s)	240, 307, 842, 920, 1237, 1505, 1687, 1691, 1916
FriOI	GRGCYC	3 cut(s)	124, 214, 481
Fsp4HI	GCNGC	7 cut(s)	369, 378, 645, 987, 2031, 2099, 2241
FspBI	CTAG	7 cut(s)	869, 977, 1146, 1289, 1508, 1692, 2034
GlaI	GCGC	2 cut(s)	521, 1463
GluI	GCNGC	7 cut(s)	369, 378, 645, 987, 2031, 2099, 2241
GsaI	CCCAGC	3 cut(s)	1788, 2247, 2298
GsuI	CTGGAG	3 cut(s)	1341, 1356, 2329
HaeIII	GGCC	4 cut(s)	368, 541, 1039, 1497
HapII	CCGG	5 cut(s)	415, 665, 1099, 1559, 2049
HgaI	GACGC	2 cut(s)	157, 458
HhaI	GCGC	2 cut(s)	522, 1464
Hin1I	GRCGYC	2 cut(s)	441, 450
Hin6I	GCGC	2 cut(s)	520, 1462
HinP1I	GCGC	2 cut(s)	520, 1462
HincII	GTYRAC	5 cut(s)	385, 448, 574, 582, 604
HindII	GTYRAC	5 cut(s)	385, 448, 574, 582, 604
HindIII	AAGCTT	3 cut(s)	1190, 1211, 2021
HinfI	GANTC	9 cut(s)	389, 497, 626, 737, 1178, 1430, 1581, 1598, 2129
HpaII	CCGG	5 cut(s)	415, 665, 1099, 1559, 2049
HphI	GGTGA	2 cut(s)	928, 1755
Hpy166II	GTNNAC	5 cut(s)	385, 448, 574, 582, 604
Hpy8I	GTNNAC	5 cut(s)	385, 448, 574, 582, 604
Hpy99I	CGWCG	6 cut(s)	345, 386, 389, 443, 446, 634
HpyAV	CCTTC	8 cut(s)	289, 295, 340, 445, 1309, 1807, 2009, 2072
HpyCH4III	ACNGT	7 cut(s)	526, 586, 879, 1124, 1267, 1816, 1926
HpyCH4IV	ACGT	4 cut(s)	441, 459, 775, 1711
HpySE526I	ACGT	4 cut(s)	441, 459, 775, 1711
Hsp92I	GRCGYC	2 cut(s)	441, 450
HspAI	GCGC	2 cut(s)	520, 1462
KpnI	GGTACC	1 cut(s)	1722
KroI	GCCGGC	1 cut(s)	2048
KroNI	GCCGGC	1 cut(s)	2050
Ksp22I	TGATCA	1 cut(s)	2146
Kzo9I	GATC	7 cut(s)	567, 1609, 1633, 2089, 2146, 2175, 2314
LguI	GCTCTTC	2 cut(s)	358, 1275
Lsp1109I	GCAGC	6 cut(s)	364, 631, 973, 2042, 2085, 2252
LweI	GCATC	6 cut(s)	754, 898, 1151, 1259, 1357, 1894
MabI	ACCWGGT	1 cut(s)	2116
MaeI	CTAG	7 cut(s)	869, 977, 1146, 1289, 1508, 1692, 2034
MaeII	ACGT	4 cut(s)	441, 459, 775, 1711
MaeIII	GTNAC	4 cut(s)	1132, 1707, 1943, 2255
MalI	GATC	7 cut(s)	569, 1611, 1635, 2091, 2148, 2177, 2316
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	7 cut(s)	567, 1609, 1633, 2089, 2146, 2175, 2314
MfeI	CAATTG	1 cut(s)	2082
MflI	RGATCY	2 cut(s)	1609, 2089
MhlI	GDGCHC	3 cut(s)	124, 214, 481
MlyI	GAGTC	5 cut(s)	506, 620, 731, 1172, 1439
MmeI	TCCRAC	4 cut(s)	495, 540, 612, 1179
Mph1103I	ATGCAT	1 cut(s)	30
MroNI	GCCGGC	1 cut(s)	2048
MroXI	GAANNNNTTC	3 cut(s)	1284, 1306, 1998
MseI	TTAA	8 cut(s)	621, 723, 849, 932, 1344, 1961, 2328, 2362
MslI	CAYNNNNRTG	3 cut(s)	155, 1017, 1961
MspA1I	CMGCKG	1 cut(s)	2243
MspCI	CTTAAG	1 cut(s)	1343
MspI	CCGG	5 cut(s)	415, 665, 1099, 1559, 2049
MspR9I	CCNGG	3 cut(s)	416, 468, 2118
MunI	CAATTG	1 cut(s)	2082
MvaI	CCWGG	2 cut(s)	468, 2118
MvnI	CGCG	2 cut(s)	168, 1803
NaeI	GCCGGC	1 cut(s)	2050
NciI	CCSGG	1 cut(s)	416
NdeI	CATATG	1 cut(s)	1848
NdeII	GATC	7 cut(s)	567, 1609, 1633, 2089, 2146, 2175, 2314
NgoMIV	GCCGGC	1 cut(s)	2048
NlaIV	GGNNCC	7 cut(s)	531, 555, 1611, 1697, 1720, 2053, 2201
NmuCI	GTSAC	1 cut(s)	1707
NsiI	ATGCAT	1 cut(s)	30
NspI	RCATGY	5 cut(s)	28, 32, 83, 154, 1091
NspV	TTCGAA	1 cut(s)	1300
PaeI	GCATGC	2 cut(s)	32, 83
PaeR7I	CTCGAG	1 cut(s)	494
PaqCI	CACCTGC	1 cut(s)	2219
PciSI	GCTCTTC	2 cut(s)	358, 1275
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PdiI	GCCGGC	1 cut(s)	2050
PdmI	GAANNNNTTC	3 cut(s)	1284, 1306, 1998
PfeI	GAWTC	4 cut(s)	389, 1581, 1598, 2129
PflMI	CCANNNNNTGG	1 cut(s)	1547
PfoI	TCCNGGA	1 cut(s)	414
PinAI	ACCGGT	1 cut(s)	1098
PkrI	GCNGC	7 cut(s)	370, 379, 646, 988, 2032, 2100, 2242
PleI	GAGTC	5 cut(s)	505, 620, 731, 1172, 1438
PmaCI	CACGTG	2 cut(s)	460, 1712
PmlI	CACGTG	2 cut(s)	460, 1712
PpsI	GAGTC	5 cut(s)	505, 620, 731, 1172, 1438
Ppu21I	YACGTR	2 cut(s)	460, 1712
Psp124BI	GAGCTC	1 cut(s)	214
Psp6I	CCWGG	2 cut(s)	466, 2116
PspCI	CACGTG	2 cut(s)	460, 1712
PspFI	CCCAGC	3 cut(s)	1784, 2243, 2294
PspGI	CCWGG	2 cut(s)	466, 2116
PspN4I	GGNNCC	7 cut(s)	531, 555, 1611, 1697, 1720, 2053, 2201
PspPI	GGNCC	2 cut(s)	1037, 1061
PspXI	VCTCGAGB	1 cut(s)	494
PstNI	CAGNNNCTG	2 cut(s)	971, 1379
PsuI	RGATCY	2 cut(s)	1609, 2089
PvuII	CAGCTG	1 cut(s)	2243
RsaI	GTAC	3 cut(s)	1686, 1720, 2249
RsaNI	GTAC	3 cut(s)	1685, 1719, 2248
RseI	CAYNNNNRTG	3 cut(s)	155, 1017, 1961
SacI	GAGCTC	1 cut(s)	214
SalI	GTCGAC	1 cut(s)	383
SapI	GCTCTTC	2 cut(s)	358, 1275
SaqAI	TTAA	8 cut(s)	621, 723, 849, 932, 1344, 1961, 2328, 2362
SatI	GCNGC	7 cut(s)	369, 378, 645, 987, 2031, 2099, 2241
Sau3AI	GATC	7 cut(s)	567, 1609, 1633, 2089, 2146, 2175, 2314
Sau96I	GGNCC	2 cut(s)	1037, 1061
ScaI	AGTACT	1 cut(s)	1686
SchI	GAGTC	5 cut(s)	506, 620, 731, 1172, 1439
ScrFI	CCNGG	3 cut(s)	416, 468, 2118
SduI	GDGCHC	3 cut(s)	124, 214, 481
SexAI	ACCWGGT	1 cut(s)	2116
SfaNI	GCATC	6 cut(s)	754, 898, 1151, 1259, 1357, 1894
SfcI	CTRYAG	1 cut(s)	2251
Sfr274I	CTCGAG	1 cut(s)	494
SfuI	TTCGAA	1 cut(s)	1300
SgrDI	CGTCGACG	1 cut(s)	383
SinI	GGWCC	1 cut(s)	1061
SlaI	CTCGAG	1 cut(s)	494
SmiMI	CAYNNNNRTG	3 cut(s)	155, 1017, 1961
SmlI	CTYRAG	5 cut(s)	203, 494, 824, 1343, 2299
SmoI	CTYRAG	5 cut(s)	203, 494, 824, 1343, 2299
SphI	GCATGC	2 cut(s)	32, 83
SsiI	CCGC	4 cut(s)	181, 369, 1801, 1991
SspMI	CTAG	7 cut(s)	869, 977, 1146, 1289, 1508, 1692, 2034
SstI	GAGCTC	1 cut(s)	214
StyD4I	CCNGG	3 cut(s)	414, 466, 2116
StyI	CCWWGG	3 cut(s)	96, 1040, 1727
TaaI	ACNGT	7 cut(s)	526, 586, 879, 1124, 1267, 1816, 1926
TaiI	ACGT	4 cut(s)	444, 462, 778, 1714
TaqI	TCGA	9 cut(s)	384, 423, 438, 475, 495, 1093, 1300, 1632, 2065
TatI	WGTACW	1 cut(s)	1684
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	4 cut(s)	389, 1581, 1598, 2129
Tru1I	TTAA	8 cut(s)	621, 723, 849, 932, 1344, 1961, 2328, 2362
Tru9I	TTAA	8 cut(s)	621, 723, 849, 932, 1344, 1961, 2328, 2362
TscAI	CASTG	2 cut(s)	1400, 1776
TseFI	GTSAC	1 cut(s)	1707
TseI	GCWGC	6 cut(s)	377, 644, 986, 2030, 2098, 2240
Tsp45I	GTSAC	1 cut(s)	1707
TspDTI	ATGAA	6 cut(s)	89, 1029, 1695, 1839, 1918, 1998
TspRI	CASTG	2 cut(s)	1400, 1776
Van91I	CCANNNNNTGG	1 cut(s)	1547
Vha464I	CTTAAG	1 cut(s)	1343
VpaK11BI	GGWCC	1 cut(s)	1061
XagI	CCTNNNNNAGG	1 cut(s)	1726
XapI	RAATTY	7 cut(s)	108, 471, 887, 920, 1348, 1436, 1826
XbaI	TCTAGA	1 cut(s)	1288
XceI	RCATGY	5 cut(s)	28, 32, 83, 154, 1091
XhoI	CTCGAG	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	384
XmnI	GAANNNNTTC	3 cut(s)	1284, 1306, 1998
XspI	CTAG	7 cut(s)	869, 977, 1146, 1289, 1508, 1692, 2034
ZraI	GACGTC	1 cut(s)	442
ZrmI	AGTACT	1 cut(s)	1686
Zsp2I	ATGCAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.