Rmu_sc0001870.1_g000018

Serine hydroxymethyltransferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001870.1
Physical Location & Seq
Reverse (-)
80083 .. 85377
5295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001870.1_g000018.1.cds

Sequence Viewer

Length: 1824 bp
atggcactggcattggcccttcgcaggctttcctcttctgtggacaagcccattcgtcctctcttcaatgccacctctcactattacatgtcatctttgcccaatgaagctgtctatgagaaggagaagaacggtgtcagttggcctaagcaactgaatgcttcattggaggctgtggatcctgagattgctgacatcattgagcacgagaaagccaggcaatggaagggcctagaactgataccttcagagaacttcacatcagtctctgtgatgcaagcagttgggtcagtcatgaccaacaaatacagtgaagggtatcctggggcaagatactatggaggaaatgagttcattgacatggcagaaaccttgtgccagaaacgtgctttggaagcttttcggttggacccagcaaaatggggagtcaacgtgcagcctttgtcaggatctccagctaattttcatgtttacactgcattgttaaaacctcatgatagaatcatggctcttgatcttcctcatggtggtcatctttctcatggttatcagactgacaccaaaaagatatcagctgtgtcaatcttttttgagacaatgccatacagattggatgagagcactggttacattgactacgaccaggggctacaaccttttcttttacatgattgtcatctttcttttatcgcagtcaacgtgcagcctttgtcaggatctccagctaattttcatgtttacactgcattgttaaaacctcatgatagaatcatggctcttgatcttcctcatggtggtcatctttctcatggttatcagactgacaccaaaaagatatcagctgtgtcaatcttttttgagacaatgccatacagattggatgagagcactggttacattgactacgaccagttggagaaaagtgccactctcttcaggccaaaattaatagttgctggtgctagtgcttatgcacgtttgtatgattatgcacgcattcgcaaggtatgcgacaaacaaaaagctatcctgttggcagatatggcacatatcagtgggttggttgcagctggtgtcatcccatctccttttgagtatgcagatgtagtgaccaccacaacacacaagtcacttcgtggccctcgcggtgccatgattttcttcaggaagggtctaaaagagactaacaaacaagggaaagaggtgttttatgactacgaagacaaaatcaatcaagctgtctttcctgggcttcaaggtggtccacacaaccacaccatcactggtttggcagttgcactgaaacaggctactactccagagtacaaagcctatcaagagcaagttctcagtaattgctcaagatttgcacagtcattgaatgagaagggctatgatcttgtttctggcggaactgagaaccatttagttttggtgaatttgaagaacaagggcattgacggctccagggttgaaaaggtgttggaagctgttcacattgcagccaacaaaaacactgttcctggagatgtgtctgccatggttcctggtggcatcaggatgggaactccggctcttacttctaggggatttgttgaggaggatttcgctaaagttgcagaattttttgatgctgctgtgaagttggcagtgaaggtcaagggggaagccaaaggaacgaagttgaaggacttcttggcagcactgcctgcccctcactttcagtctgaaattgcaaagctccgccatgatgtcgaggatacaagaactgaaagaaatcatgttgtgttaggcatggtgcaggcatcatcagagttttcttga
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

607

Amino Acids

67.06

Weight (kDa)

6.92

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1148
AccB7I CCANNNNNTGG 1 cut(s) 222
AccII CGCG 1 cut(s) 1146
AciI CCGC 3 cut(s) 1146, 1410, 1744
AclWI GGATC 4 cut(s) 173, 186, 457, 724
AcsI RAATTY 2 cut(s) 1438, 1622
AcuI CTGAAG 3 cut(s) 231, 919, 1147
AdeI CACNNNGTG 1 cut(s) 1136
AfaI GTAC 1 cut(s) 1325
AfiI CCNNNNNNNGG 6 cut(s) 24, 222, 446, 527, 713, 794
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 6 cut(s) 67, 1256, 1381, 1444, 1475, 1687
AjnI CCWGG 7 cut(s) 215, 322, 642, 1246, 1466, 1522, 1546
AjuI GAANNNNNNNTTGG 6 cut(s) 149, 181, 374, 406, 1679, 1711
Alw21I GWGCWC 3 cut(s) 207, 623, 890
Alw26I GTCTC 4 cut(s) 271, 587, 854, 1175
AlwI GGATC 4 cut(s) 173, 186, 457, 724
AlwNI CAGNNNCTG 1 cut(s) 269
AoxI GGCC 5 cut(s) 15, 143, 229, 938, 1138
ApeKI GCWGC 6 cut(s) 436, 703, 1067, 1502, 1634, 1700
ApoI RAATTY 2 cut(s) 1438, 1622
AseI ATTAAT 1 cut(s) 947
Asp700I GAANNNNTTC 3 cut(s) 399, 1491, 1691
AspS9I GGNCC 5 cut(s) 16, 229, 409, 1139, 1262
AsuHPI GGTGA 1 cut(s) 1447
AvaII GGWCC 2 cut(s) 409, 1262
BamHI GGATCC 1 cut(s) 178
BanI GGYRCC 1 cut(s) 1148
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 1227
Bbv12I GWGCWC 3 cut(s) 207, 623, 890
BbvI GCAGC 6 cut(s) 448, 715, 1079, 1514, 1621, 1712
BccI CCATC 3 cut(s) 1090, 1286, 1555
BceAI ACGGC 1 cut(s) 1477
BciT130I CCWGG 7 cut(s) 217, 324, 644, 1248, 1468, 1524, 1548
BciVI GTATCC 2 cut(s) 330, 1753
BcoDI GTCTC 4 cut(s) 271, 587, 854, 1175
BfaI CTAG 3 cut(s) 233, 963, 1584
BfuI GTATCC 2 cut(s) 330, 1753
BisI GCNGC 6 cut(s) 437, 704, 1068, 1503, 1635, 1701
BlsI GCNGC 6 cut(s) 438, 705, 1069, 1504, 1636, 1702
Bme1390I CCNGG 7 cut(s) 217, 324, 644, 1248, 1468, 1524, 1548
Bme18I GGWCC 2 cut(s) 409, 1262
BmgT120I GGNCC 5 cut(s) 16, 229, 409, 1139, 1262
BmiI GGNNCC 5 cut(s) 180, 411, 1150, 1465, 1545
BmrFI CCNGG 7 cut(s) 217, 324, 644, 1248, 1468, 1524, 1548
BmsI GCATC 4 cut(s) 264, 1563, 1621, 1814
BpiI GAAGAC 1 cut(s) 1227
BpmI CTGGAG 5 cut(s) 438, 705, 1302, 1450, 1545
Bpu10I CCTNAGC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 1345
BsaBI GATNNNNATC 1 cut(s) 675
BsaJI CCNNGG 5 cut(s) 323, 643, 1247, 1467, 1539
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 6 cut(s) 24, 222, 446, 527, 713, 794
Bse1I ACTGG 5 cut(s) 12, 628, 895, 910, 1288
Bse3DI GCAATG 2 cut(s) 227, 1497
Bse8I GATNNNNATC 1 cut(s) 675
BseBI CCWGG 7 cut(s) 217, 324, 644, 1248, 1468, 1524, 1548
BseDI CCNNGG 5 cut(s) 323, 643, 1247, 1467, 1539
BseGI GGATG 4 cut(s) 619, 886, 1077, 1566
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 6 cut(s) 24, 222, 446, 527, 713, 794
BseMI GCAATG 2 cut(s) 227, 1497
BseMII CTCAG 3 cut(s) 174, 1363, 1407
BseNI ACTGG 5 cut(s) 12, 628, 895, 910, 1288
BseRI GAGGAG 1 cut(s) 1613
BseXI GCAGC 6 cut(s) 448, 715, 1079, 1514, 1621, 1712
BseYI CCCAGC 1 cut(s) 412
BsgI GTGCAG 3 cut(s) 455, 722, 1820
Bsh1236I CGCG 1 cut(s) 1146
BshFI GGCC 5 cut(s) 17, 145, 231, 940, 1140
BshNI GGYRCC 1 cut(s) 1148
BsiHKAI GWGCWC 3 cut(s) 207, 623, 890
BsiSI CCGG 1 cut(s) 1571
BslI CCNNNNNNNGG 6 cut(s) 24, 222, 446, 527, 713, 794
BsmAI GTCTC 4 cut(s) 271, 587, 854, 1175
BsmI GAATGC 2 cut(s) 163, 996
BsnI GGCC 5 cut(s) 17, 145, 231, 940, 1140
Bsp1286I GDGCHC 3 cut(s) 207, 623, 890
Bsp143I GATC 6 cut(s) 178, 449, 514, 716, 781, 1396
Bsp19I CCATGG 1 cut(s) 1539
BspACI CCGC 3 cut(s) 1146, 1410, 1744
BspANI GGCC 5 cut(s) 17, 145, 231, 940, 1140
BspCNI CTCAG 3 cut(s) 175, 1362, 1408
BspFNI CGCG 1 cut(s) 1146
BspHI TCATGA 3 cut(s) 294, 493, 760
BspLI GGNNCC 5 cut(s) 180, 411, 1150, 1465, 1545
BspPI GGATC 4 cut(s) 173, 186, 457, 724
BspT107I GGYRCC 1 cut(s) 1148
BsrDI GCAATG 2 cut(s) 227, 1497
BsrI ACTGG 5 cut(s) 12, 628, 895, 910, 1288
BssECI CCNNGG 5 cut(s) 323, 643, 1247, 1467, 1539
BssMI GATC 6 cut(s) 178, 449, 514, 716, 781, 1396
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 1539
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 7 cut(s) 217, 324, 644, 1248, 1468, 1524, 1548
Bst4CI ACNGT 4 cut(s) 134, 311, 1374, 1519
Bst6I CTCTTC 3 cut(s) 40, 68, 938
BstAPI GCANNNNNTGC 2 cut(s) 1008, 1709
BstC8I GCNNGC 5 cut(s) 26, 279, 994, 1710, 1803
BstDEI CTNAG 4 cut(s) 147, 183, 1349, 1416
BstDSI CCRYGG 1 cut(s) 1539
BstENI CCTNNNNNAGG 2 cut(s) 444, 711
BstF5I GGATG 4 cut(s) 619, 886, 1077, 1566
BstFNI CGCG 1 cut(s) 1146
BstKTI GATC 6 cut(s) 181, 452, 517, 719, 784, 1399
BstMAI GTCTC 4 cut(s) 271, 587, 854, 1175
BstMBI GATC 6 cut(s) 178, 449, 514, 716, 781, 1396
BstMWI GCNNNNNNNGC 6 cut(s) 395, 1008, 1043, 1461, 1616, 1709
BstNI CCWGG 7 cut(s) 217, 324, 644, 1248, 1468, 1524, 1548
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 7 cut(s) 215, 322, 642, 1246, 1466, 1522, 1546
BstUI CGCG 1 cut(s) 1146
BstV1I GCAGC 6 cut(s) 448, 715, 1079, 1514, 1621, 1712
BstV2I GAAGAC 1 cut(s) 1227
BstX2I RGATCY 3 cut(s) 178, 449, 716
BstXI CCANNNNNNTGG 1 cut(s) 420
BstYI RGATCY 3 cut(s) 178, 449, 716
BsuI GTATCC 2 cut(s) 330, 1753
BsuRI GGCC 5 cut(s) 17, 145, 231, 940, 1140
BtgI CCRYGG 1 cut(s) 1539
BtsCI GGATG 4 cut(s) 619, 886, 1077, 1566
BtsI GCAGTG 4 cut(s) 474, 741, 1656, 1703
Cac8I GCNNGC 5 cut(s) 26, 279, 994, 1710, 1803
CaiI CAGNNNCTG 1 cut(s) 269
CciI TCATGA 3 cut(s) 294, 493, 760
Cfr13I GGNCC 5 cut(s) 16, 229, 409, 1139, 1262
Csp6I GTAC 1 cut(s) 1324
CviQI GTAC 1 cut(s) 1324
DdeI CTNAG 4 cut(s) 147, 183, 1349, 1416
DpnI GATC 6 cut(s) 180, 451, 516, 718, 783, 1398
DpnII GATC 6 cut(s) 178, 449, 514, 716, 781, 1396
DraIII CACNNNGTG 1 cut(s) 1136
Eam1104I CTCTTC 3 cut(s) 40, 68, 938
EarI CTCTTC 3 cut(s) 40, 68, 938
EciI GGCGGA 2 cut(s) 1425, 1733
Eco130I CCWWGG 1 cut(s) 1539
Eco32I GATATC 2 cut(s) 570, 837
Eco47I GGWCC 2 cut(s) 409, 1262
Eco57I CTGAAG 3 cut(s) 231, 919, 1147
EcoNI CCTNNNNNAGG 2 cut(s) 444, 711
EcoO109I RGGNCCY 1 cut(s) 229
EcoRII CCWGG 7 cut(s) 215, 322, 642, 1246, 1466, 1522, 1546
EcoRV GATATC 2 cut(s) 570, 837
EcoT14I CCWWGG 1 cut(s) 1539
ErhI CCWWGG 1 cut(s) 1539
FalI AAGNNNNNCTT 2 cut(s) 1679, 1711
Fnu4HI GCNGC 6 cut(s) 437, 704, 1068, 1503, 1635, 1701
FokI GGATG 4 cut(s) 626, 893, 1064, 1573
Fsp4HI GCNGC 6 cut(s) 437, 704, 1068, 1503, 1635, 1701
FspBI CTAG 3 cut(s) 233, 963, 1584
GluI GCNGC 6 cut(s) 437, 704, 1068, 1503, 1635, 1701
GsaI CCCAGC 1 cut(s) 416
GsuI CTGGAG 5 cut(s) 438, 705, 1302, 1450, 1545
HaeIII GGCC 5 cut(s) 17, 145, 231, 940, 1140
HapII CCGG 1 cut(s) 1571
HincII GTYRAC 2 cut(s) 430, 697
HindII GTYRAC 2 cut(s) 430, 697
HindIII AAGCTT 1 cut(s) 396
HinfI GANTC 3 cut(s) 426, 501, 768
HpaII CCGG 1 cut(s) 1571
HphI GGTGA 1 cut(s) 1447
Hpy166II GTNNAC 7 cut(s) 43, 430, 472, 697, 739, 1265, 1495
Hpy188I TCNGA 5 cut(s) 250, 552, 819, 1729, 1813
Hpy8I GTNNAC 7 cut(s) 43, 430, 472, 697, 739, 1265, 1495
HpyAV CCTTC 9 cut(s) 29, 115, 220, 255, 308, 1162, 1381, 1648, 1681
HpyCH4III ACNGT 4 cut(s) 134, 311, 1374, 1519
HpyCH4IV ACGT 4 cut(s) 385, 432, 699, 976
HpyF10VI GCNNNNNNNGC 6 cut(s) 395, 1008, 1043, 1461, 1616, 1709
HpyF3I CTNAG 4 cut(s) 147, 183, 1349, 1416
HpySE526I ACGT 4 cut(s) 385, 432, 699, 976
Kzo9I GATC 6 cut(s) 178, 449, 514, 716, 781, 1396
LmnI GCTCC 2 cut(s) 1469, 1746
Lsp1109I GCAGC 6 cut(s) 448, 715, 1079, 1514, 1621, 1712
LweI GCATC 4 cut(s) 264, 1563, 1621, 1814
MaeI CTAG 3 cut(s) 233, 963, 1584
MaeII ACGT 4 cut(s) 385, 432, 699, 976
MaeIII GTNAC 4 cut(s) 626, 893, 1108, 1128
MalI GATC 6 cut(s) 180, 451, 516, 718, 783, 1398
MboI GATC 6 cut(s) 178, 449, 514, 716, 781, 1396
MboII GAAGA 9 cut(s) 27, 55, 139, 509, 776, 925, 1153, 1232, 1456
MflI RGATCY 3 cut(s) 178, 449, 716
MhlI GDGCHC 3 cut(s) 207, 623, 890
MluCI AATT 7 cut(s) 460, 727, 944, 1354, 1438, 1622, 1731
MlyI GAGTC 1 cut(s) 435
MmeI TCCRAC 3 cut(s) 387, 894, 1464
MroXI GAANNNNTTC 3 cut(s) 399, 1491, 1691
MseI TTAA 3 cut(s) 485, 752, 947
MslI CAYNNNNRTG 3 cut(s) 359, 1053, 1559
MspA1I CMGCKG 3 cut(s) 575, 842, 1070
MspI CCGG 1 cut(s) 1571
MspR9I CCNGG 7 cut(s) 217, 324, 644, 1248, 1468, 1524, 1548
Mva1269I GAATGC 2 cut(s) 163, 996
MvaI CCWGG 7 cut(s) 217, 324, 644, 1248, 1468, 1524, 1548
MvnI CGCG 1 cut(s) 1146
MwoI GCNNNNNNNGC 6 cut(s) 395, 1008, 1043, 1461, 1616, 1709
NcoI CCATGG 1 cut(s) 1539
NdeII GATC 6 cut(s) 178, 449, 514, 716, 781, 1396
NlaIV GGNNCC 5 cut(s) 180, 411, 1150, 1465, 1545
NmuCI GTSAC 2 cut(s) 1108, 1128
NspI RCATGY 1 cut(s) 91
PagI TCATGA 3 cut(s) 294, 493, 760
PciI ACATGT 1 cut(s) 87
PcsI WCGNNNNNNNCGW 1 cut(s) 696
PctI GAATGC 2 cut(s) 163, 996
PdmI GAANNNNTTC 3 cut(s) 399, 1491, 1691
PfeI GAWTC 2 cut(s) 501, 768
PflMI CCANNNNNTGG 1 cut(s) 222
PfoI TCCNGGA 1 cut(s) 1522
PkrI GCNGC 6 cut(s) 438, 705, 1069, 1504, 1636, 1702
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
PscI ACATGT 1 cut(s) 87
PshBI ATTAAT 1 cut(s) 947
Psp6I CCWGG 7 cut(s) 215, 322, 642, 1246, 1466, 1522, 1546
PspFI CCCAGC 1 cut(s) 412
PspGI CCWGG 7 cut(s) 215, 322, 642, 1246, 1466, 1522, 1546
PspN4I GGNNCC 5 cut(s) 180, 411, 1150, 1465, 1545
PspPI GGNCC 5 cut(s) 16, 229, 409, 1139, 1262
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 3 cut(s) 178, 449, 716
PvuII CAGCTG 3 cut(s) 575, 842, 1070
RsaI GTAC 1 cut(s) 1325
RsaNI GTAC 1 cut(s) 1324
RseI CAYNNNNRTG 3 cut(s) 359, 1053, 1559
SaqAI TTAA 3 cut(s) 485, 752, 947
SatI GCNGC 6 cut(s) 437, 704, 1068, 1503, 1635, 1701
Sau3AI GATC 6 cut(s) 178, 449, 514, 716, 781, 1396
Sau96I GGNCC 5 cut(s) 16, 229, 409, 1139, 1262
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 7 cut(s) 217, 324, 644, 1248, 1468, 1524, 1548
SduI GDGCHC 3 cut(s) 207, 623, 890
SfaNI GCATC 4 cut(s) 264, 1563, 1621, 1814
SinI GGWCC 2 cut(s) 409, 1262
SmiMI CAYNNNNRTG 3 cut(s) 359, 1053, 1559
SmlI CTYRAG 1 cut(s) 1360
SmoI CTYRAG 1 cut(s) 1360
Sse9I AATT 7 cut(s) 460, 727, 944, 1354, 1438, 1622, 1731
SsiI CCGC 3 cut(s) 1146, 1410, 1744
SspMI CTAG 3 cut(s) 233, 963, 1584
StyD4I CCNGG 7 cut(s) 215, 322, 642, 1246, 1466, 1522, 1546
StyI CCWWGG 1 cut(s) 1539
TaaI ACNGT 4 cut(s) 134, 311, 1374, 1519
TaiI ACGT 4 cut(s) 388, 435, 702, 979
TaqI TCGA 1 cut(s) 1755
TasI AATT 7 cut(s) 460, 727, 944, 1354, 1438, 1622, 1731
TatI WGTACW 1 cut(s) 1323
TfiI GAWTC 2 cut(s) 501, 768
Tru1I TTAA 3 cut(s) 485, 752, 947
Tru9I TTAA 3 cut(s) 485, 752, 947
TseFI GTSAC 2 cut(s) 1108, 1128
TseI GCWGC 6 cut(s) 436, 703, 1067, 1502, 1634, 1700
Tsp45I GTSAC 2 cut(s) 1108, 1128
TspDTI ATGAA 5 cut(s) 120, 153, 343, 455, 722
Van91I CCANNNNNTGG 1 cut(s) 222
VpaK11BI GGWCC 2 cut(s) 409, 1262
VspI ATTAAT 1 cut(s) 947
XagI CCTNNNNNAGG 2 cut(s) 444, 711
XapI RAATTY 2 cut(s) 1438, 1622
XceI RCATGY 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 2 cut(s) 1280, 1285
XmnI GAANNNNTTC 3 cut(s) 399, 1491, 1691
XspI CTAG 3 cut(s) 233, 963, 1584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.