Prupe.6G209100_v2.0.a1

Serine hydroxymethyltransferase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
21760597 .. 21767295
6699 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G209100.2

Sequence Viewer

Length: 1554 bp
ATGGCAATGGCATTGGCGCTTCGCAGGCTTTCCTCTTCTGGGGACAAGCCCATTCGCCCTCTCTTCAATGCCACCTCTCATTATTACATGTCATCTTTGCCCAATGAAGCTGTCTACGACAAGGAGAAGCCCGGTGTCACATGGCCTAAGCAACTGAATGCTCCACTGGAGGCTGTGGATCCCGAAATTGCAGACATCATTGAACACGAGAAAACCAGGCAATGGAAGGGGCTAGAGCTGATACCCTCAGAGAACTTCACATCGCTGTCTGTGATGCAAGCAGTTGGGTCAGTGATGACCAACAAATACAGTGAAGGATACCCCGGTGCTAGATACTATGGAGGAAATGAGTTCATTGACATGGCAGAATCTTTATGCCAAAAGCGTGCTCTGGAAGCATTTCGGTTAGATCCAGCAAAATGGGGAGTCAACGTGCAGCCTTTATCAGGGTCTCCAGCTAATTTCCAGGTTTACACTGCATTGTTAAAACCTCATGATAGAATCATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGACTGACACTAAAAAGATATCTGCTGTGTCGATCTTTTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGCTATATTGACTACGACCAGTTGGAGAAAAGTGCCACGCTATTTCGGCCAAAATTAATAGTTGCTGGTGCTAGTGCCTATGCACGTCTGTATGACTATGCACATATTCGCAAGGTATGCAACAATCAGAAAGCAATATTGTTGGCAGATATGGCACACATCAGTGGGTTGGTTGCAGCTGGTGTCATCCCATCACCTTTCGAGTATGCGGATGTGGTGACCACCACAACGCACAAGTCGCTTCGTGGCCCTCGTGGAGCCATGATTTTCTTCAGGAAGGGGGTAAAAGAGATTAACAAACAGGGGAAAGAGGTGCTGTATGACTACGAAGACAAAATCAATCAAGCTGTCTTTCCTGGGCTTCAAGGTGGCCCGCACAACCACACAATTACTGGTTTGGCAGTTGCATTGAAACAGGCTACTACACCAGAGTACAAAGCTTATCAAGAGCAAGTTCTCAGCAATTGCTCAAGATTTGCACAGTCTTTGGTTGAGAAGGGCTACGAACTTGTCTCTGGCGGAACTGAGAACCATTTAGTTTTGGTGAATTTGAAGAACAAGGGTATTGATGGCTCCAGGGTCGAAAAAGTGTTAGAAGCTGTTCACATTGCAGCCAACAAGAACACTGTTCCTGGAGATGTGTCTGCCATGGTTCCTGGCGGCATCAGGATGGGAACCCCAGCTCTAACCTCTAGGGGATTTGTTGAGGAGGATTTCGCTAAAGTTGCAGATTTTTTTGATGCTGCTGTGAAGTTAGCAGTGAAGATCAAGGGGGAAGCCCAAGGAACAAAGTTGAAGGACTTTGTGGCCGCACTGCCCGCCCCTCACTTCCAATCTGAAATTGCAAAGCTCCGACATGATGTCGAGGAGTATGCTAAGCAATTTCCCACAATTGGGTTTGAGAAGGAAACCTTGAAGTACAAGAACTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

518

Amino Acids

57.05

Weight (kDa)

8.39

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 222
AccI GTMKAC 1 cut(s) 114
AciI CCGC 6 cut(s) 833, 998, 1143, 1284, 1434, 1443
AclWI GGATC 3 cut(s) 173, 186, 404
AcoI YGGCCR 2 cut(s) 671, 1431
AcsI RAATTY 1 cut(s) 1171
AcuI CTGAAG 1 cut(s) 880
AfaI GTAC 2 cut(s) 1058, 1544
AfiI CCNNNNNNNGG 6 cut(s) 39, 222, 446, 527, 1517, 1518
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 9 cut(s) 67, 203, 593, 613, 989, 1036, 1177, 1420, 1540
AhdI GACNNNNNGTC 1 cut(s) 1484
AjiI CACGTC 1 cut(s) 710
AjnI CCWGG 6 cut(s) 215, 465, 979, 1199, 1255, 1279
AleI CACNNNNGTG 1 cut(s) 786
AluBI AGCT 9 cut(s) 110, 238, 458, 803, 971, 1064, 1223, 1307, 1474
AluI AGCT 9 cut(s) 110, 238, 458, 803, 971, 1064, 1223, 1307, 1474
Alw21I GWGCWC 2 cut(s) 391, 623
Alw26I GTCTC 2 cut(s) 456, 1141
AlwI GGATC 3 cut(s) 173, 186, 404
AoxI GGCC 5 cut(s) 143, 671, 871, 994, 1431
ApeKI GCWGC 4 cut(s) 436, 800, 1235, 1367
ApoI RAATTY 1 cut(s) 1171
AseI ATTAAT 1 cut(s) 680
Asp700I GAANNNNTTC 2 cut(s) 399, 1224
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 872, 995
AsuC2I CCSGG 2 cut(s) 132, 324
AsuHPI GGTGA 3 cut(s) 810, 853, 1180
BaeI ACNNNNGTAYC 2 cut(s) 310, 343
BamHI GGATCC 1 cut(s) 178
BauI CACGAG 2 cut(s) 206, 876
BbsI GAAGAC 1 cut(s) 960
Bbv12I GWGCWC 2 cut(s) 391, 623
BbvI GCAGC 4 cut(s) 448, 812, 1247, 1354
BccI CCATC 3 cut(s) 823, 1187, 1288
BcgI CGANNNNNNTGC 2 cut(s) 1478, 1512
BciT130I CCWGG 6 cut(s) 217, 467, 981, 1201, 1257, 1281
BciVI GTATCC 1 cut(s) 311
BcnI CCSGG 2 cut(s) 132, 324
BcoDI GTCTC 2 cut(s) 456, 1141
BfaI CTAG 4 cut(s) 233, 330, 696, 1317
BfoI RGCGCY 1 cut(s) 20
BfuI GTATCC 1 cut(s) 311
BisI GCNGC 6 cut(s) 437, 801, 1236, 1285, 1368, 1434
BlpI GCTNAGC 1 cut(s) 1500
BlsI GCNGC 6 cut(s) 438, 802, 1237, 1286, 1369, 1435
Bme1390I CCNGG 8 cut(s) 132, 217, 324, 467, 981, 1201, 1257, 1281
BmeRI GACNNNNNGTC 1 cut(s) 1484
BmgBI CACGTC 1 cut(s) 710
BmgT120I GGNCC 2 cut(s) 872, 995
BmiI GGNNCC 5 cut(s) 180, 883, 1198, 1278, 1300
BmrFI CCNGG 8 cut(s) 132, 217, 324, 467, 981, 1201, 1257, 1281
BmsI GCATC 3 cut(s) 264, 1296, 1354
BpiI GAAGAC 1 cut(s) 960
BpmI CTGGAG 4 cut(s) 188, 438, 1183, 1278
Bpu10I CCTNAGC 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 1500
BpuEI CTTGAG 1 cut(s) 1078
BpuMI CCSGG 2 cut(s) 132, 324
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 5 cut(s) 322, 980, 1200, 1272, 1405
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 6 cut(s) 39, 222, 446, 527, 1517, 1518
Bse1I ACTGG 4 cut(s) 171, 628, 643, 1021
Bse3DI GCAATG 3 cut(s) 12, 227, 1230
BseBI CCWGG 6 cut(s) 217, 467, 981, 1201, 1257, 1281
BseDI CCNNGG 5 cut(s) 322, 980, 1200, 1272, 1405
BseGI GGATG 3 cut(s) 810, 841, 1299
BseLI CCNNNNNNNGG 6 cut(s) 39, 222, 446, 527, 1517, 1518
BseMI GCAATG 3 cut(s) 12, 227, 1230
BseMII CTCAG 3 cut(s) 261, 1096, 1140
BseNI ACTGG 4 cut(s) 171, 628, 643, 1021
BseRI GAGGAG 2 cut(s) 1346, 1505
BseXI GCAGC 4 cut(s) 448, 812, 1247, 1354
BseYI CCCAGC 1 cut(s) 1303
BsgI GTGCAG 1 cut(s) 455
BshFI GGCC 5 cut(s) 145, 673, 873, 996, 1433
BsiHKAI GWGCWC 2 cut(s) 391, 623
BsiSI CCGG 2 cut(s) 132, 324
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 6 cut(s) 39, 222, 446, 527, 1517, 1518
BsmAI GTCTC 2 cut(s) 456, 1141
BsmFI GGGAC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 5 cut(s) 145, 673, 873, 996, 1433
Bso31I GGTCTC 1 cut(s) 456
Bsp1286I GDGCHC 2 cut(s) 391, 623
Bsp143I GATC 5 cut(s) 178, 409, 514, 582, 1389
Bsp1720I GCTNAGC 1 cut(s) 1500
Bsp19I CCATGG 1 cut(s) 1272
BspACI CCGC 6 cut(s) 833, 998, 1143, 1284, 1434, 1443
BspANI GGCC 5 cut(s) 145, 673, 873, 996, 1433
BspCNI CTCAG 3 cut(s) 260, 1095, 1141
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 5 cut(s) 180, 883, 1198, 1278, 1300
BspPI GGATC 3 cut(s) 173, 186, 404
BspTNI GGTCTC 1 cut(s) 456
BsrDI GCAATG 3 cut(s) 12, 227, 1230
BsrI ACTGG 4 cut(s) 171, 628, 643, 1021
BssECI CCNNGG 5 cut(s) 322, 980, 1200, 1272, 1405
BssMI GATC 5 cut(s) 178, 409, 514, 582, 1389
BssSI CACGAG 2 cut(s) 206, 876
BssT1I CCWWGG 2 cut(s) 1272, 1405
Bst2BI CACGAG 2 cut(s) 206, 876
Bst2UI CCWGG 6 cut(s) 217, 467, 981, 1201, 1257, 1281
Bst4CI ACNGT 3 cut(s) 311, 1107, 1252
Bst6I CTCTTC 2 cut(s) 40, 68
BstAPI GCANNNNNTGC 1 cut(s) 741
BstC8I GCNNGC 5 cut(s) 26, 279, 387, 998, 1443
BstDEI CTNAG 5 cut(s) 147, 247, 1082, 1149, 1500
BstDSI CCRYGG 1 cut(s) 1272
BstEII GGTNACC 1 cut(s) 841
BstENI CCTNNNNNAGG 1 cut(s) 444
BstF5I GGATG 3 cut(s) 810, 841, 1299
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 5 cut(s) 181, 412, 517, 585, 1392
BstMAI GTCTC 2 cut(s) 456, 1141
BstMBI GATC 5 cut(s) 178, 409, 514, 582, 1389
BstMWI GCNNNNNNNGC 8 cut(s) 25, 395, 670, 741, 776, 862, 1349, 1442
BstNI CCWGG 6 cut(s) 217, 467, 981, 1201, 1257, 1281
BstNSI RCATGY 1 cut(s) 91
BstPI GGTNACC 1 cut(s) 841
BstSCI CCNGG 8 cut(s) 130, 215, 322, 465, 979, 1199, 1255, 1279
BstV1I GCAGC 4 cut(s) 448, 812, 1247, 1354
BstV2I GAAGAC 1 cut(s) 960
BstX2I RGATCY 2 cut(s) 178, 409
BstXI CCANNNNNNTGG 1 cut(s) 420
BstYI RGATCY 2 cut(s) 178, 409
BsuI GTATCC 1 cut(s) 311
BsuRI GGCC 5 cut(s) 145, 673, 873, 996, 1433
BtgI CCRYGG 1 cut(s) 1272
BtgZI GCGATG 1 cut(s) 246
BtrI CACGTC 1 cut(s) 710
BtsCI GGATG 3 cut(s) 810, 841, 1299
BtsI GCAGTG 3 cut(s) 474, 1389, 1436
BtsIMutI CAGTG 9 cut(s) 164, 297, 316, 474, 621, 793, 1248, 1389, 1436
Cac8I GCNNGC 5 cut(s) 26, 279, 387, 998, 1443
CciI TCATGA 1 cut(s) 493
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 872, 995
Csp6I GTAC 2 cut(s) 1057, 1543
CviQI GTAC 2 cut(s) 1057, 1543
DdeI CTNAG 5 cut(s) 147, 247, 1082, 1149, 1500
DpnI GATC 5 cut(s) 180, 411, 516, 584, 1391
DpnII GATC 5 cut(s) 178, 409, 514, 582, 1389
DriI GACNNNNNGTC 1 cut(s) 1484
EaeI YGGCCR 2 cut(s) 671, 1431
Eam1104I CTCTTC 2 cut(s) 40, 68
Eam1105I GACNNNNNGTC 1 cut(s) 1484
EarI CTCTTC 2 cut(s) 40, 68
EciI GGCGGA 1 cut(s) 1158
Eco130I CCWWGG 2 cut(s) 1272, 1405
Eco31I GGTCTC 1 cut(s) 456
Eco32I GATATC 1 cut(s) 570
Eco57I CTGAAG 1 cut(s) 880
Eco91I GGTNACC 1 cut(s) 841
EcoNI CCTNNNNNAGG 1 cut(s) 444
EcoO65I GGTNACC 1 cut(s) 841
EcoRII CCWGG 6 cut(s) 215, 465, 979, 1199, 1255, 1279
EcoRV GATATC 1 cut(s) 570
EcoT14I CCWWGG 2 cut(s) 1272, 1405
ErhI CCWWGG 2 cut(s) 1272, 1405
FalI AAGNNNNNCTT 2 cut(s) 1520, 1552
FaqI GGGAC 1 cut(s) 56
FauI CCCGC 2 cut(s) 1005, 1450
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 6 cut(s) 437, 801, 1236, 1285, 1368, 1434
FokI GGATG 3 cut(s) 797, 848, 1306
Fsp4HI GCNGC 6 cut(s) 437, 801, 1236, 1285, 1368, 1434
FspBI CTAG 4 cut(s) 233, 330, 696, 1317
GlaI GCGC 1 cut(s) 18
GluI GCNGC 6 cut(s) 437, 801, 1236, 1285, 1368, 1434
GsaI CCCAGC 1 cut(s) 1307
GsuI CTGGAG 4 cut(s) 188, 438, 1183, 1278
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 5 cut(s) 145, 673, 873, 996, 1433
HapII CCGG 2 cut(s) 132, 324
HhaI GCGC 1 cut(s) 19
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HindIII AAGCTT 1 cut(s) 1062
HinfI GANTC 3 cut(s) 368, 426, 501
HpaII CCGG 2 cut(s) 132, 324
HphI GGTGA 3 cut(s) 810, 853, 1180
Hpy166II GTNNAC 5 cut(s) 115, 430, 472, 530, 1228
Hpy188I TCNGA 5 cut(s) 250, 552, 753, 1462, 1478
Hpy188III TCNNGA 7 cut(s) 182, 392, 494, 898, 1070, 1095, 1291
Hpy8I GTNNAC 5 cut(s) 115, 430, 472, 530, 1228
HpyAV CCTTC 6 cut(s) 220, 308, 895, 1114, 1414, 1522
HpyCH4III ACNGT 3 cut(s) 311, 1107, 1252
HpyCH4IV ACGT 2 cut(s) 432, 709
HpyF10VI GCNNNNNNNGC 8 cut(s) 25, 395, 670, 741, 776, 862, 1349, 1442
HpyF3I CTNAG 5 cut(s) 147, 247, 1082, 1149, 1500
HpySE526I ACGT 2 cut(s) 432, 709
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 5 cut(s) 178, 409, 514, 582, 1389
LmnI GCTCC 4 cut(s) 166, 881, 1202, 1479
Lsp1109I GCAGC 4 cut(s) 448, 812, 1247, 1354
LweI GCATC 3 cut(s) 264, 1296, 1354
MaeI CTAG 4 cut(s) 233, 330, 696, 1317
MaeII ACGT 2 cut(s) 432, 709
MaeIII GTNAC 2 cut(s) 136, 841
MalI GATC 5 cut(s) 180, 411, 516, 584, 1391
MboI GATC 5 cut(s) 178, 409, 514, 582, 1389
MboII GAAGA 7 cut(s) 27, 55, 509, 886, 965, 1189, 1399
MfeI CAATTG 2 cut(s) 1087, 1515
MflI RGATCY 2 cut(s) 178, 409
MhlI GDGCHC 2 cut(s) 391, 623
MluCI AATT 9 cut(s) 186, 460, 677, 1011, 1087, 1171, 1464, 1505, 1515
MlyI GAGTC 1 cut(s) 435
MmeI TCCRAC 2 cut(s) 627, 1501
MroXI GAANNNNTTC 2 cut(s) 399, 1224
MseI TTAA 3 cut(s) 485, 680, 918
MslI CAYNNNNRTG 3 cut(s) 359, 786, 1292
MspA1I CMGCKG 1 cut(s) 803
MspI CCGG 2 cut(s) 132, 324
MspR9I CCNGG 8 cut(s) 132, 217, 324, 467, 981, 1201, 1257, 1281
MunI CAATTG 2 cut(s) 1087, 1515
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 6 cut(s) 217, 467, 981, 1201, 1257, 1281
MwoI GCNNNNNNNGC 8 cut(s) 25, 395, 670, 741, 776, 862, 1349, 1442
NciI CCSGG 2 cut(s) 132, 324
NcoI CCATGG 1 cut(s) 1272
NdeII GATC 5 cut(s) 178, 409, 514, 582, 1389
NlaIV GGNNCC 5 cut(s) 180, 883, 1198, 1278, 1300
NmuCI GTSAC 2 cut(s) 136, 841
NspI RCATGY 1 cut(s) 91
OliI CACNNNNGTG 1 cut(s) 786
PagI TCATGA 1 cut(s) 493
PciI ACATGT 1 cut(s) 87
PcsI WCGNNNNNNNCGW 1 cut(s) 874
PctI GAATGC 1 cut(s) 163
PdmI GAANNNNTTC 2 cut(s) 399, 1224
PfeI GAWTC 2 cut(s) 368, 501
PflMI CCANNNNNTGG 1 cut(s) 222
PfoI TCCNGGA 1 cut(s) 1255
PkrI GCNGC 6 cut(s) 438, 802, 1237, 1286, 1369, 1435
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
PscI ACATGT 1 cut(s) 87
PshBI ATTAAT 1 cut(s) 680
Psp6I CCWGG 6 cut(s) 215, 465, 979, 1199, 1255, 1279
PspEI GGTNACC 1 cut(s) 841
PspFI CCCAGC 1 cut(s) 1303
PspGI CCWGG 6 cut(s) 215, 465, 979, 1199, 1255, 1279
PspN4I GGNNCC 5 cut(s) 180, 883, 1198, 1278, 1300
PspPI GGNCC 2 cut(s) 872, 995
PsuI RGATCY 2 cut(s) 178, 409
PvuII CAGCTG 1 cut(s) 803
RsaI GTAC 2 cut(s) 1058, 1544
RsaNI GTAC 2 cut(s) 1057, 1543
RseI CAYNNNNRTG 3 cut(s) 359, 786, 1292
SaqAI TTAA 3 cut(s) 485, 680, 918
SatI GCNGC 6 cut(s) 437, 801, 1236, 1285, 1368, 1434
Sau3AI GATC 5 cut(s) 178, 409, 514, 582, 1389
Sau96I GGNCC 2 cut(s) 872, 995
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 8 cut(s) 132, 217, 324, 467, 981, 1201, 1257, 1281
SduI GDGCHC 2 cut(s) 391, 623
SfaNI GCATC 3 cut(s) 264, 1296, 1354
SmiMI CAYNNNNRTG 3 cut(s) 359, 786, 1292
SmlI CTYRAG 1 cut(s) 1093
SmoI CTYRAG 1 cut(s) 1093
Sse9I AATT 9 cut(s) 186, 460, 677, 1011, 1087, 1171, 1464, 1505, 1515
SsiI CCGC 6 cut(s) 833, 998, 1143, 1284, 1434, 1443
SspI AATATT 1 cut(s) 762
SspMI CTAG 4 cut(s) 233, 330, 696, 1317
StyD4I CCNGG 8 cut(s) 130, 215, 322, 465, 979, 1199, 1255, 1279
StyI CCWWGG 2 cut(s) 1272, 1405
TaaI ACNGT 3 cut(s) 311, 1107, 1252
TaiI ACGT 2 cut(s) 435, 712
TaqI TCGA 4 cut(s) 581, 825, 1206, 1488
TasI AATT 9 cut(s) 186, 460, 677, 1011, 1087, 1171, 1464, 1505, 1515
TatI WGTACW 2 cut(s) 1056, 1542
TauI GCSGC 2 cut(s) 1287, 1436
TfiI GAWTC 2 cut(s) 368, 501
Tru1I TTAA 3 cut(s) 485, 680, 918
Tru9I TTAA 3 cut(s) 485, 680, 918
TscAI CASTG 9 cut(s) 171, 297, 316, 481, 628, 793, 1255, 1389, 1443
TseFI GTSAC 2 cut(s) 136, 841
TseI GCWGC 4 cut(s) 436, 800, 1235, 1367
Tsp45I GTSAC 2 cut(s) 136, 841
TspDTI ATGAA 2 cut(s) 120, 343
TspRI CASTG 9 cut(s) 171, 297, 316, 481, 628, 793, 1255, 1389, 1443
Van91I CCANNNNNTGG 1 cut(s) 222
VspI ATTAAT 1 cut(s) 680
XagI CCTNNNNNAGG 1 cut(s) 444
XapI RAATTY 1 cut(s) 1171
XceI RCATGY 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 1013
XmiI GTMKAC 1 cut(s) 114
XmnI GAANNNNTTC 2 cut(s) 399, 1224
XspI CTAG 4 cut(s) 233, 330, 696, 1317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.