AT4G38150

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012429
Physical Location & Seq
Reverse (-)
17900570 .. 17902282
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38150.1

Sequence Viewer

Length: 909 bp
ATGGTGCCTTCCTCCAAAGCCGTCGTTTTTGCAAGGCAGATGGCGAAGCAGATTCGTGTTACGACGCCGTCGATGTCCGCAACACGCTTTCTCTCAACGGGCGACAATGGTCAAGTAGACGAGCAGCAGAACCCTCCAGAGCCCTTACCCAACAGACCCTTGCGAGGGGAGAGATCTTCCAACTCTCACAGAGAACCACCCGCTAGACAAGCCCACAACCTTGGAAAGAGTGATACTACTCTGTCTGACGATGGCTTCCTCGAACAGTTCAAGCTTGGAGTCAATCAGGATTCACGGGAAACCCCCAAACCGGAACAATACCCGCAGGAGCCCTTACCGCCGCCTGAGGATTCCGATGAGATCTTCAAGAAGATGAAGGAAGGAGGTCTCATCCCTAACGCCGTCGCCATGCTTGACGGCCTCTGCAAAGATGGGCTTGTACAAGAGGCCATGAAGCTTTTCGGATTGATGCGTGACAAGGGTACAATCCCTGAGGTCGTTATCTACACTGCTGTCGTTGAGGCCTTTTGCAAGGCTCATAAAATTGAAGACGCTAAGAGGATTTTCAGGAAAATGCAGAACAATGGGATTGCCCCTAATGCCTTCAGCTACGGTGTGTTGGTTCAGGGATTGTATAATTGCAACATGCTTGACGATGCTGTTGCTTTCTGTAGTGAGATGCTTGAGTCTGGTCACTCTCCTAACGTCCCCACTTTCGTTGAATTGGTTGATGCCTTGTGCAGAGTAAAGGGGGTTGAACAAGCCCAGTCCGCTATTGATACCTTAAACCAAAAAGGATTTGCCGTTAATGTTAAGGCTGTCAAGGAGTTCATGGATAAAAGGGCTCCATTTCCGTCTTTGGCTTGGGAAGCCATCTTCAAGAAGAAACCAACCGAGAAACCCTTCTGA

Protein Analysis

302

Amino Acids

33.45

Weight (kDa)

6.47

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 136 - 161 3.5e-06 PPR repeat
PPR_3 PF13812 156 - 208 3.1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 163 - 193 2.3e-06 PPR repeat
PPR_2 PF13041 164 - 212 3.3e-13 PPR repeat family
PPR PF01535 167 - 197 6.9e-06 PPR repeat
TPR_24 PF23276 169 - 255 1e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 204 - 248 1.6e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012429)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38150 AT4G38150 AT4G38150
fragaria_vesca FvH4_2g17180
malus_domestica MD05G1145100.v1.1
prunus_persica Prupe.8G183200_v2.0.a1
pyrus_communis pycom05g14030 pycom07g10800 pycom10g12460
rosa_chinensis RchiOBHm_Chr6g0281671
rosa_laevigata RLG00000012952
rosa_multiflora Rmu_co8238379.1_g000001 Rmu_sc0019758.1_g000001
rosa_rugosa Rorug06G0142300
rosa_samantha Rh6AG255000 Rh6BG258400 Rh6CG257200 Rh6DG249400
rosa_wichuraiana Rw6G022130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 117
AciI CCGC 6 cut(s) 78, 201, 323, 338, 341, 771
AcuI CTGAAG 1 cut(s) 589
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 2 cut(s) 441, 484
AfiI CCNNNNNNNGG 3 cut(s) 164, 165, 310
AgsI TTSAA 6 cut(s) 271, 367, 548, 722, 758, 880
AluBI AGCT 3 cut(s) 274, 457, 609
AluI AGCT 3 cut(s) 274, 457, 609
Alw26I GTCTC 1 cut(s) 392
AoxI GGCC 3 cut(s) 418, 447, 522
ApeKI GCWGC 1 cut(s) 124
Asp700I GAANNNNTTC 2 cut(s) 458, 902
AxyI CCTNAGG 2 cut(s) 345, 492
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 3 cut(s) 144, 333, 847
BbsI GAAGAC 1 cut(s) 555
BbvI GCAGC 1 cut(s) 136
BccI CCATC 4 cut(s) 34, 245, 425, 881
BceAI ACGGC 5 cut(s) 5, 52, 386, 433, 788
BcgI CGANNNNNNTGC 2 cut(s) 644, 678
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 670
BglII AGATCT 2 cut(s) 173, 360
BisI GCNGC 2 cut(s) 125, 341
BlsI GCNGC 2 cut(s) 126, 342
BmiI GGNNCC 3 cut(s) 6, 330, 846
BmrI ACTGGG 1 cut(s) 760
BmsI GCATC 4 cut(s) 459, 646, 669, 721
BmuI ACTGGG 1 cut(s) 760
BoxI GACNNNNGTC 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 555
BpmI CTGGAG 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 704
BsaHI GRCGYC 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 220
BsaWI WCCGGW 1 cut(s) 310
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 165, 310
Bse1I ACTGG 1 cut(s) 766
Bse21I CCTNAGG 2 cut(s) 345, 492
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 390
BseLI CCNNNNNNNGG 3 cut(s) 164, 165, 310
BseMII CTCAG 2 cut(s) 336, 483
BseNI ACTGG 1 cut(s) 766
BseXI GCAGC 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 760
BshFI GGCC 3 cut(s) 420, 449, 524
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 311
BslFI GGGAC 1 cut(s) 692
BslI CCNNNNNNNGG 3 cut(s) 164, 165, 310
BsmAI GTCTC 1 cut(s) 392
BsmFI GGGAC 1 cut(s) 692
BsnI GGCC 3 cut(s) 420, 449, 524
Bso31I GGTCTC 1 cut(s) 392
Bsp1286I GDGCHC 3 cut(s) 144, 333, 847
Bsp1407I TGTACA 1 cut(s) 439
Bsp143I GATC 2 cut(s) 173, 360
BspACI CCGC 6 cut(s) 78, 201, 323, 338, 341, 771
BspANI GGCC 3 cut(s) 420, 449, 524
BspCNI CTCAG 2 cut(s) 337, 484
BspLI GGNNCC 3 cut(s) 6, 330, 846
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 392
BsrGI TGTACA 1 cut(s) 439
BsrI ACTGG 1 cut(s) 766
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 2 cut(s) 173, 360
BssNI GRCGYC 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 220
Bst4CI ACNGT 2 cut(s) 267, 614
BstACI GRCGYC 1 cut(s) 65
BstAUI TGTACA 1 cut(s) 439
BstDEI CTNAG 3 cut(s) 345, 492, 555
BstF5I GGATG 1 cut(s) 390
BstKTI GATC 2 cut(s) 176, 363
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 2 cut(s) 173, 360
BstMWI GCNNNNNNNGC 5 cut(s) 209, 337, 599, 770, 869
BstNSI RCATGY 1 cut(s) 649
BstPAI GACNNNNGTC 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 670
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 2 cut(s) 173, 360
BstXI CCANNNNNNTGG 1 cut(s) 221
BstYI RGATCY 2 cut(s) 173, 360
Bsu36I CCTNAGG 2 cut(s) 345, 492
BsuRI GGCC 3 cut(s) 420, 449, 524
BtsCI GGATG 1 cut(s) 390
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 1 cut(s) 507
CseI GACGC 2 cut(s) 73, 560
Csp6I GTAC 2 cut(s) 440, 483
CspCI CAANNNNNGTGG 2 cut(s) 700, 735
CviAII CATG 4 cut(s) 409, 451, 646, 832
CviQI GTAC 2 cut(s) 440, 483
DdeI CTNAG 3 cut(s) 345, 492, 555
DpnI GATC 2 cut(s) 175, 362
DpnII GATC 2 cut(s) 173, 360
Eco130I CCWWGG 1 cut(s) 220
Eco147I AGGCCT 1 cut(s) 524
Eco24I GRGCYC 3 cut(s) 144, 333, 847
Eco31I GGTCTC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 589
Eco81I CCTNAGG 2 cut(s) 345, 492
EcoT14I CCWWGG 1 cut(s) 220
EcoT38I GRGCYC 3 cut(s) 144, 333, 847
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 4 cut(s) 412, 454, 649, 835
FaiI YATR 6 cut(s) 410, 452, 540, 636, 647, 833
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 1 cut(s) 692
FatI CATG 4 cut(s) 408, 450, 645, 831
FauI CCCGC 2 cut(s) 208, 330
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 125, 341
FokI GGATG 1 cut(s) 377
FriOI GRGCYC 3 cut(s) 144, 333, 847
Fsp4HI GCNGC 2 cut(s) 125, 341
FspBI CTAG 1 cut(s) 204
GluI GCNGC 2 cut(s) 125, 341
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 3 cut(s) 420, 449, 524
HapII CCGG 1 cut(s) 311
HgaI GACGC 2 cut(s) 73, 560
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 4 cut(s) 412, 454, 649, 835
HindIII AAGCTT 2 cut(s) 272, 455
HinfI GANTC 5 cut(s) 52, 279, 290, 350, 686
HpaII CCGG 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 4 cut(s) 247, 355, 464, 908
Hpy188III TCNNGA 5 cut(s) 137, 287, 367, 568, 880
Hpy8I GTNNAC 1 cut(s) 118
Hpy99I CGWCG 4 cut(s) 26, 67, 73, 407
HpyAV CCTTC 4 cut(s) 18, 370, 374, 613
HpyCH4III ACNGT 2 cut(s) 267, 614
HpyCH4IV ACGT 1 cut(s) 705
HpyCH4V TGCA 6 cut(s) 32, 426, 531, 577, 642, 741
HpyF10VI GCNNNNNNNGC 5 cut(s) 209, 337, 599, 770, 869
HpyF3I CTNAG 3 cut(s) 345, 492, 555
HpySE526I ACGT 1 cut(s) 705
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 4 cut(s) 412, 454, 649, 835
Kzo9I GATC 2 cut(s) 173, 360
LmnI GCTCC 2 cut(s) 328, 850
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 4 cut(s) 459, 646, 669, 721
MaeI CTAG 1 cut(s) 204
MaeII ACGT 1 cut(s) 705
MaeIII GTNAC 3 cut(s) 58, 473, 692
MalI GATC 2 cut(s) 175, 362
MboI GATC 2 cut(s) 173, 360
MboII GAAGA 6 cut(s) 168, 355, 382, 560, 868, 895
MflI RGATCY 2 cut(s) 173, 360
MhlI GDGCHC 3 cut(s) 144, 333, 847
MluCI AATT 3 cut(s) 543, 637, 722
MlyI GAGTC 2 cut(s) 288, 695
MmeI TCCRAC 1 cut(s) 204
MroXI GAANNNNTTC 2 cut(s) 458, 902
MseI TTAA 3 cut(s) 785, 807, 813
MspI CCGG 1 cut(s) 311
MwoI GCNNNNNNNGC 5 cut(s) 209, 337, 599, 770, 869
NdeII GATC 2 cut(s) 173, 360
NlaIII CATG 4 cut(s) 412, 454, 649, 835
NlaIV GGNNCC 3 cut(s) 6, 330, 846
NmuCI GTSAC 2 cut(s) 473, 692
NspI RCATGY 1 cut(s) 649
PceI AGGCCT 1 cut(s) 524
PcsI WCGNNNNNNNCGW 1 cut(s) 68
PdmI GAANNNNTTC 2 cut(s) 458, 902
PfeI GAWTC 3 cut(s) 52, 290, 350
PflFI GACNNNGTC 1 cut(s) 67
PkrI GCNGC 2 cut(s) 126, 342
PleI GAGTC 2 cut(s) 287, 694
PpsI GAGTC 2 cut(s) 287, 694
PshAI GACNNNNGTC 1 cut(s) 108
PspN4I GGNNCC 3 cut(s) 6, 330, 846
PsuI RGATCY 2 cut(s) 173, 360
PsyI GACNNNGTC 1 cut(s) 67
RsaI GTAC 2 cut(s) 441, 484
RsaNI GTAC 2 cut(s) 440, 483
SaqAI TTAA 3 cut(s) 785, 807, 813
SatI GCNGC 2 cut(s) 125, 341
Sau3AI GATC 2 cut(s) 173, 360
SchI GAGTC 2 cut(s) 288, 695
SduI GDGCHC 3 cut(s) 144, 333, 847
SetI ASST 8 cut(s) 222, 276, 388, 459, 498, 611, 708, 785
SfaNI GCATC 4 cut(s) 459, 646, 669, 721
SfcI CTRYAG 1 cut(s) 670
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 3 cut(s) 543, 637, 722
SseBI AGGCCT 1 cut(s) 524
SsiI CCGC 6 cut(s) 78, 201, 323, 338, 341, 771
SspMI CTAG 1 cut(s) 204
StuI AGGCCT 1 cut(s) 524
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 267, 614
TaiI ACGT 1 cut(s) 708
TaqI TCGA 2 cut(s) 71, 261
TasI AATT 3 cut(s) 543, 637, 722
TatI WGTACW 1 cut(s) 439
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 3 cut(s) 52, 290, 350
Tru1I TTAA 3 cut(s) 785, 807, 813
Tru9I TTAA 3 cut(s) 785, 807, 813
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 2 cut(s) 473, 692
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 2 cut(s) 473, 692
TspDTI ATGAA 3 cut(s) 389, 467, 820
TspGWI ACGGA 1 cut(s) 843
TspRI CASTG 1 cut(s) 514
Tth111I GACNNNGTC 1 cut(s) 67
XceI RCATGY 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 2 cut(s) 458, 902
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.