Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8238379.1

Orthogroup ID

OG0012429

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 336

Gene Structure 335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8238379.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 335 bp

atgccatcgtttacgaagcacatcttctccacaatttccaaccctattggccattcatctcaggcctccatttctgctagctcgttgattaaactacgtcgttttagctccggtactgatcgtggccgtgaaatggaagcgccggagaaacaaccgccggagccgatacccaataggcccttaagagggcagagaccatcgaatccccggaccaatgctgatagaaggagagagagccatcccaatttagaaaggaggagggagaaccctaatccgccattgcaggacagcagttttcttgagaagctcaagatgggtcttgacaagtcgaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

111

Amino Acids

12.61

Weight (kDa)

11.09

Isoelectric Point (pI)

75.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38150 AT4G38150 AT4G38150
fragaria_vesca	FvH4_2g17180
malus_domestica	MD05G1145100.v1.1
prunus_persica	Prupe.8G183200_v2.0.a1
pyrus_communis	pycom05g14030 pycom07g10800 pycom10g12460
rosa_chinensis	RchiOBHm_Chr6g0281671
rosa_laevigata	RLG00000012952
rosa_multiflora	Rmu_co8238379.1_g000001 Rmu_sc0019758.1_g000001
rosa_rugosa	Rorug06G0142300
rosa_samantha	Rh6AG255000 Rh6BG258400 Rh6CG257200 Rh6DG249400
rosa_wichuraiana	Rw6G022130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	155, 275
AcoI	YGGCCR	2 cut(s)	49, 124
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	3 cut(s)	133, 185, 186
AflII	CTTAAG	1 cut(s)	181
AluBI	AGCT	3 cut(s)	81, 108, 307
AluI	AGCT	3 cut(s)	81, 108, 307
Alw26I	GTCTC	1 cut(s)	187
AoxI	GGCC	4 cut(s)	49, 63, 124, 176
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	2 cut(s)	177, 210
AsuC2I	CCSGG	1 cut(s)	208
AsuNHI	GCTAGC	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	51
BccI	CCATC	4 cut(s)	13, 205, 246, 307
BceAI	ACGGC	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	143
BfrI	CTTAAG	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	2 cut(s)	177, 210
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	208
BmtI	GCTAGC	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	293, 320
BpuMI	CCSGG	1 cut(s)	208
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 185, 186
Bse3DI	GCAATG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	3 cut(s)	133, 185, 186
BseMI	GCAATG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	74
BseRI	GAGGAG	1 cut(s)	271
BshFI	GGCC	4 cut(s)	51, 65, 126, 178
BsiSI	CCGG	4 cut(s)	111, 143, 158, 208
BslI	CCNNNNNNNGG	3 cut(s)	133, 185, 186
BsmAI	GTCTC	1 cut(s)	187
BsnI	GGCC	4 cut(s)	51, 65, 126, 178
Bso31I	GGTCTC	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	2 cut(s)	155, 275
BspANI	GGCC	4 cut(s)	51, 65, 126, 178
BspCNI	CTCAG	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	162
BspOI	GCTAGC	1 cut(s)	81
BspTI	CTTAAG	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	1 cut(s)	118
Bst6I	CTCTTC	1 cut(s)	326
BstAFI	CTTAAG	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	238
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	206
BsuRI	GGCC	4 cut(s)	51, 65, 126, 178
BtsCI	GGATG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	79
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	177, 210
Csp6I	GTAC	1 cut(s)	114
CviJI	RGCY	9 cut(s)	51, 65, 81, 108, 126, 163, 178, 237, 307
CviKI_1	RGCY	9 cut(s)	51, 65, 81, 108, 126, 163, 178, 237, 307
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
EaeI	YGGCCR	2 cut(s)	49, 124
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
EciI	GGCGGA	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	177
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FokI	GGATG	1 cut(s)	225
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	141
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	4 cut(s)	51, 65, 126, 178
HapII	CCGG	4 cut(s)	111, 143, 158, 208
HhaI	GCGC	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	4 cut(s)	111, 143, 158, 208
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188III	TCNNGA	3 cut(s)	299, 310, 320
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	1 cut(s)	219
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	1 cut(s)	283
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	97
HspAI	GCGC	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	113, 160
LpnPI	CCDG	6 cut(s)	47, 124, 156, 171, 221, 269
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	97
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	1 cut(s)	16
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	2 cut(s)	33, 244
MluNI	TGGCCA	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	4 cut(s)	76, 179, 249, 252
Mox20I	TGGCCA	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	2 cut(s)	90, 182
Msp20I	TGGCCA	1 cut(s)	51
MspCI	CTTAAG	1 cut(s)	181
MspI	CCGG	4 cut(s)	111, 143, 158, 208
MspR9I	CCNGG	1 cut(s)	208
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	1 cut(s)	118
NheI	GCTAGC	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	162
PceI	AGGCCT	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	177, 210
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	90, 182
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	2 cut(s)	177, 210
ScrFI	CCNGG	1 cut(s)	208
SetI	ASST	4 cut(s)	83, 100, 110, 309
SinI	GGWCC	1 cut(s)	210
SmlI	CTYRAG	3 cut(s)	181, 299, 308
SmoI	CTYRAG	3 cut(s)	181, 299, 308
Sse9I	AATT	2 cut(s)	33, 244
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	2 cut(s)	155, 275
SspMI	CTAG	1 cut(s)	78
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	206
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	200, 329
TasI	AATT	2 cut(s)	33, 244
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	2 cut(s)	90, 182
Tru9I	TTAA	2 cut(s)	90, 182
TspDTI	ATGAA	1 cut(s)	45
Vha464I	CTTAAG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	210
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.