Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012429

Physical Location & Seq

Genomic Coordinates Forward (+)

14885239 .. 14889480

Gene Structure 4242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCCATCGTTTCATGCCCGGGTTCCGAAGCACATCTTCTCCACAGTTTCTAACTCTCTTGGCCACTCAAAACTACGTCGTTTTAGCTCCGGAACTGATCGCGGCCGTGAAATGGAGGCTCCGGCGAAACAACCGCCGGAGCCGATACCCAATAGGCCGTTAAGAGGCCAGAGAGCGTCGAATCCCCAACCCAATTTAGAAAGAAGGAGAGAGAGCCCTCCCAATTTGGAGAGGAGGAGGGAGAACCCTAATCCGCCATTGCAGGACAGCAGTTTTCTTGAGAAGCTGAAAATGGGTCTTGAGAAGTCGAAGAGAGAGAAGCCACAGGAAGCGGCGGAGCCACCGCCGCCGCAGCCGCAGCCGACGGAGGAGGCCAATGAGATATTCAAGAAGATGAAGGAGACGGGTCTGATTCCCAATGCGGTGGCAATGCTTGATGGGCTCTGTAAAGATGGGCTGGTCCAGGAGGCAATGAAGCTTTTCGGGTCGATGCGCGAAAAGGGGACTATTCCTGAGGTGGTGATATACACTGCTGTGGTGGAGGGATTCTGCAAAGGCCGGAAGCCCGAAGATGCTAAGAGGGTTTTCAGGAAGATGCAGAGCAATGGGATTGTTCCGAATGCGTTTAGTTACAATGTGATGGTGCAGGGGCTGTGTAGGTGTGAGAAGATGAAGGATGCTGCTGAGTTCTGTGGGGAAATGTTGGAAGCGGGTCACTCGCCGAATGTGACTACTTTTGTGGGGTTGGTTGATGGGGTGTGCAAGGAAAATGGGGTGGAAGGAGGTGAGAGTGTGATTGGGAAGTTGAAGCAGAGGGGATATGTGGTTAATGAGAAGGCTGTTAGGGAGTTTTTGGATAAAAGGGCATCGTTTTCGCCAATGGTTTGGGAAGCTATCTTTGGGAAGAACCATTCAAAGAAACTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

310

Amino Acids

34.57

Weight (kDa)

9.43

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	143 - 168	1.3e-06	PPR repeat
PPR_3	PF13812	160 - 215	3.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	170 - 200	4.3e-06	PPR repeat
PPR_2	PF13041	171 - 220	2.6e-15	PPR repeat family
PPR	PF01535	174 - 204	9.4e-07	PPR repeat
PPR_1	PF12854	202 - 234	1.8e-08	PPR repeat
PPR_2	PF13041	206 - 255	2e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38150 AT4G38150 AT4G38150
fragaria_vesca	FvH4_2g17180
malus_domestica	MD05G1145100.v1.1
prunus_persica	Prupe.8G183200_v2.0.a1
pyrus_communis	pycom05g14030 pycom07g10800 pycom10g12460
rosa_chinensis	RchiOBHm_Chr6g0281671
rosa_laevigata	RLG00000012952
rosa_multiflora	Rmu_co8238379.1_g000001 Rmu_sc0019758.1_g000001
rosa_rugosa	Rorug06G0142300
rosa_samantha	Rh6AG255000 Rh6BG258400 Rh6CG257200 Rh6DG249400
rosa_wichuraiana	Rw6G022130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	102, 495
AccIII	TCCGGA	1 cut(s)	89
AcoI	YGGCCR	2 cut(s)	61, 103
AfiI	CCNNNNNNNGG	2 cut(s)	112, 164
AgsI	TTSAA	3 cut(s)	388, 808, 915
AjnI	CCWGG	1 cut(s)	462
AjuI	GAANNNNNNNTTGG	4 cut(s)	368, 400, 882, 914
AleI	CACNNNNGTG	1 cut(s)	533
AluBI	AGCT	4 cut(s)	87, 286, 478, 893
AluI	AGCT	4 cut(s)	87, 286, 478, 893
Alw26I	GTCTC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	652
Ama87I	CYCGRG	1 cut(s)	18
Aor13HI	TCCGGA	1 cut(s)	89
AoxI	GGCC	6 cut(s)	61, 103, 155, 166, 372, 556
ApeKI	GCWGC	3 cut(s)	352, 358, 680
Asp700I	GAANNNNTTC	1 cut(s)	479
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	1 cut(s)	460
AsuC2I	CCSGG	2 cut(s)	19, 20
AsuHPI	GGTGA	2 cut(s)	532, 797
AvaI	CYCGRG	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	460
AxyI	CCTNAGG	1 cut(s)	513
BalI	TGGCCA	1 cut(s)	63
BanII	GRGCYC	2 cut(s)	218, 444
BbvI	GCAGC	3 cut(s)	364, 370, 667
BccI	CCATC	5 cut(s)	13, 431, 446, 634, 746
BceAI	ACGGC	2 cut(s)	90, 142
BcgI	CGANNNNNNTGC	2 cut(s)	855, 889
BciT130I	CCWGG	1 cut(s)	464
BcnI	CCSGG	2 cut(s)	19, 20
BcoDI	GTCTC	1 cut(s)	395
BisI	GCNGC	8 cut(s)	103, 333, 347, 350, 353, 356, 359, 681
BlsI	GCNGC	8 cut(s)	104, 334, 348, 351, 354, 357, 360, 682
Bme1390I	CCNGG	3 cut(s)	19, 20, 464
Bme18I	GGWCC	1 cut(s)	460
BmeT110I	CYCGRG	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	4 cut(s)	24, 120, 141, 339
BmrFI	CCNGG	3 cut(s)	19, 20, 464
BmsI	GCATC	5 cut(s)	480, 562, 585, 667, 875
BpuEI	CTTGAG	2 cut(s)	299, 320
BpuMI	CCSGG	2 cut(s)	19, 20
BsaJI	CCNNGG	1 cut(s)	18
BsaWI	WCCGGW	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 164
Bse21I	CCTNAGG	1 cut(s)	513
Bse3DI	GCAATG	4 cut(s)	257, 435, 477, 610
BseAI	TCCGGA	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	682
BseLI	CCNNNNNNNGG	2 cut(s)	112, 164
BseMI	GCAATG	4 cut(s)	257, 435, 477, 610
BseMII	CTCAG	2 cut(s)	504, 675
BseRI	GAGGAG	3 cut(s)	247, 250, 383
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	364, 370, 667
BsgI	GTGCAG	1 cut(s)	665
Bsh1236I	CGCG	2 cut(s)	102, 495
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	6 cut(s)	63, 105, 157, 168, 374, 558
BsiEI	CGRYCG	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	18
BsiSI	CCGG	5 cut(s)	19, 90, 122, 137, 559
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	2 cut(s)	112, 164
BsmAI	GTCTC	1 cut(s)	395
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	517
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	6 cut(s)	63, 105, 157, 168, 374, 558
BsoBI	CYCGRG	1 cut(s)	18
Bsp1286I	GDGCHC	2 cut(s)	218, 444
Bsp13I	TCCGGA	1 cut(s)	89
Bsp143I	GATC	1 cut(s)	97
BspANI	GGCC	6 cut(s)	63, 105, 157, 168, 374, 558
BspCNI	CTCAG	2 cut(s)	505, 676
BspEI	TCCGGA	1 cut(s)	89
BspFNI	CGCG	2 cut(s)	102, 495
BspLI	GGNNCC	4 cut(s)	24, 120, 141, 339
BsrDI	GCAATG	4 cut(s)	257, 435, 477, 610
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	1 cut(s)	305
BstDEI	CTNAG	3 cut(s)	513, 576, 684
BstF5I	GGATG	1 cut(s)	682
BstFNI	CGCG	2 cut(s)	102, 495
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	1 cut(s)	100
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	1 cut(s)	97
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	5 cut(s)	346, 352, 355, 358, 439
BstNI	CCWGG	1 cut(s)	464
BstSCI	CCNGG	3 cut(s)	17, 18, 462
BstUI	CGCG	2 cut(s)	102, 495
BstV1I	GCAGC	3 cut(s)	364, 370, 667
BstXI	CCANNNNNNTGG	2 cut(s)	424, 885
BstZI	CGGCCG	1 cut(s)	103
Bsu36I	CCTNAGG	1 cut(s)	513
BsuRI	GGCC	6 cut(s)	63, 105, 157, 168, 374, 558
BtsCI	GGATG	1 cut(s)	682
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	1 cut(s)	528
CaiI	CAGNNNCTG	1 cut(s)	652
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	460
Cfr9I	CCCGGG	1 cut(s)	18
CseI	GACGC	1 cut(s)	165
CviAII	CATG	1 cut(s)	14
DdeI	CTNAG	3 cut(s)	513, 576, 684
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
EaeI	YGGCCR	2 cut(s)	61, 103
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
EciI	GGCGGA	2 cut(s)	243, 350
EclXI	CGGCCG	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	218, 444
Eco47I	GGWCC	1 cut(s)	460
Eco52I	CGGCCG	1 cut(s)	103
Eco81I	CCTNAGG	1 cut(s)	513
Eco88I	CYCGRG	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	462
EcoT38I	GRGCYC	2 cut(s)	218, 444
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	1 cut(s)	17
FaiI	YATR	3 cut(s)	15, 526, 822
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	1 cut(s)	13
FauI	CCCGC	1 cut(s)	703
Fnu4HI	GCNGC	8 cut(s)	103, 333, 347, 350, 353, 356, 359, 681
FokI	GGATG	1 cut(s)	689
FriOI	GRGCYC	2 cut(s)	218, 444
Fsp4HI	GCNGC	8 cut(s)	103, 333, 347, 350, 353, 356, 359, 681
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	8 cut(s)	103, 333, 347, 350, 353, 356, 359, 681
HaeIII	GGCC	6 cut(s)	63, 105, 157, 168, 374, 558
HapII	CCGG	5 cut(s)	19, 90, 122, 137, 559
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	1 cut(s)	17
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	3 cut(s)	181, 412, 546
HpaII	CCGG	5 cut(s)	19, 90, 122, 137, 559
HphI	GGTGA	2 cut(s)	532, 797
Hpy188I	TCNGA	3 cut(s)	27, 411, 618
Hpy188III	TCNNGA	6 cut(s)	90, 278, 299, 388, 512, 589
Hpy99I	CGWCG	3 cut(s)	81, 181, 367
HpyAV	CCTTC	5 cut(s)	198, 391, 667, 773, 829
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	5 cut(s)	262, 552, 598, 646, 762
HpyF10VI	GCNNNNNNNGC	5 cut(s)	346, 352, 355, 358, 439
HpyF3I	CTNAG	3 cut(s)	513, 576, 684
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	1 cut(s)	17
HspAI	GCGC	1 cut(s)	493
Kpn2I	TCCGGA	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	4 cut(s)	92, 124, 139, 337
Lsp1109I	GCAGC	3 cut(s)	364, 370, 667
LweI	GCATC	5 cut(s)	480, 562, 585, 667, 875
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	3 cut(s)	629, 713, 727
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	7 cut(s)	28, 322, 403, 581, 604, 679, 916
MhlI	GDGCHC	2 cut(s)	218, 444
MlsI	TGGCCA	1 cut(s)	63
MluCI	AATT	2 cut(s)	193, 223
MluNI	TGGCCA	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	684
Mox20I	TGGCCA	1 cut(s)	63
MroI	TCCGGA	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	63
MseI	TTAA	2 cut(s)	161, 828
MslI	CAYNNNNRTG	1 cut(s)	533
Msp20I	TGGCCA	1 cut(s)	63
MspI	CCGG	5 cut(s)	19, 90, 122, 137, 559
MspR9I	CCNGG	3 cut(s)	19, 20, 464
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	1 cut(s)	464
MvnI	CGCG	2 cut(s)	102, 495
MwoI	GCNNNNNNNGC	5 cut(s)	346, 352, 355, 358, 439
NciI	CCSGG	2 cut(s)	19, 20
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	4 cut(s)	24, 120, 141, 339
NmuCI	GTSAC	2 cut(s)	713, 727
OliI	CACNNNNGTG	1 cut(s)	533
PctI	GAATGC	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	479
PfeI	GAWTC	3 cut(s)	181, 412, 546
PfoI	TCCNGGA	1 cut(s)	462
PkrI	GCNGC	8 cut(s)	104, 334, 348, 351, 354, 357, 360, 682
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	4 cut(s)	24, 120, 141, 339
PspPI	GGNCC	1 cut(s)	460
PstNI	CAGNNNCTG	1 cut(s)	652
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	2 cut(s)	161, 828
SatI	GCNGC	8 cut(s)	103, 333, 347, 350, 353, 356, 359, 681
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	1 cut(s)	460
ScrFI	CCNGG	3 cut(s)	19, 20, 464
SduI	GDGCHC	2 cut(s)	218, 444
SetI	ASST	8 cut(s)	79, 89, 288, 480, 519, 662, 787, 895
SfaNI	GCATC	5 cut(s)	480, 562, 585, 667, 875
SinI	GGWCC	1 cut(s)	460
SmaI	CCCGGG	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	278, 299
SmoI	CTYRAG	2 cut(s)	278, 299
Sse9I	AATT	2 cut(s)	193, 223
StyD4I	CCNGG	3 cut(s)	17, 18, 462
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	3 cut(s)	179, 308, 488
TasI	AATT	2 cut(s)	193, 223
TauI	GCSGC	5 cut(s)	105, 335, 349, 352, 358
TfiI	GAWTC	3 cut(s)	181, 412, 546
Tru1I	TTAA	2 cut(s)	161, 828
Tru9I	TTAA	2 cut(s)	161, 828
TscAI	CASTG	1 cut(s)	535
TseFI	GTSAC	2 cut(s)	713, 727
TseI	GCWGC	3 cut(s)	352, 358, 680
Tsp45I	GTSAC	2 cut(s)	713, 727
TspDTI	ATGAA	3 cut(s)	410, 488, 686
TspGWI	ACGGA	1 cut(s)	380
TspMI	CCCGGG	1 cut(s)	18
TspRI	CASTG	1 cut(s)	535
VpaK11BI	GGWCC	1 cut(s)	460
XmaI	CCCGGG	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.