Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012429

Physical Location & Seq

Genomic Coordinates Forward (+)

27642203 .. 27643144

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1145100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGCCATCGTTTCAGGATCGGGTTTCCAAGCACATATTTGCTGCAGTTTCTAATCCATTTCGCCAATCAACGAGCTTGTCGACGAAGCTGCATCGTTTTAGCACCACCGCCGATCGTGGCGGTGAAATGGAAGCAGCATCAGAGCAACAGCCGCCGGATCCCATACCCAATAGGCCCTTGAGAGGCCAAAGACTATCAAATCCCCAAACTTCCAATCTCCAATTCCTCAACAAAAACTCACCCATTTCAGAGAGAAGGAGAGAGAGCCCTTCTTCTCCGCCATTGCAGGACAGCAGCTTTCTTGAAAAGCTGAAGCTGGGACTCGACAAGTCGAAGAGGGAGGAGCCGCAGGAAGTTCCCGAGCCGCCGCAGCCGCCGGAAGAAGCGGACCAGATATTCAAGAAGATGAAGGAGACGGGTCTGATTCCGAATGCGGTGGCAATGCTTGACGGGCTATGCAAAGATGGTCTGGTCCAGGAGGCCATGAAGCTTTTTGGGTCGATGCGCGAAAAGGGTACGATTCCTGAGGTTGTTATATACACTGCTGTGGTTGATGGCTTTTGCAAAGCACAGAAGTTCGAAGATGCTAAGAGGATTTTCAGGAAGATGCAGAGCAATGGGATTGTTCCTAATGCTTTTAGTTACACTGTGTTGATACAAGGGTTGTATAGAGCTAATAATTTGGAGGATGCTGCTGAATTTTGTAGCGAAATGCTGGAAGCCGGTCACTCGCCCAATGTAGCTACTTTTGTCGGGTTGATTGATGCGGTTTGTAAGGAAAAGGATATGGAAGAAGCTGAGAGTGTTATTGGGAAGTTGAAGCAGAAGGGGTATATGGTTAATGAGAAGGCTGTTAAAGAGTTTTTGGACAAAAAGGCACCATTTTCGCCGAGGGTTTGGGAAGCTATCTTTGGGAAGAATAAGTCACAGAGAATGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

314

Amino Acids

35.09

Weight (kDa)

8.52

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	147 - 172	1.3e-06	PPR repeat
PPR_long	PF17177	158 - 289	1e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	164 - 220	1.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	174 - 204	2.3e-07	PPR repeat
PPR_2	PF13041	175 - 223	3e-15	PPR repeat family
PPR	PF01535	178 - 208	4.3e-07	PPR repeat
TPR_24	PF23276	180 - 267	7.8e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	198 - 257	8.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	206 - 238	1e-06	PPR repeat
PPR_2	PF13041	213 - 259	9.3e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38150 AT4G38150 AT4G38150
fragaria_vesca	FvH4_2g17180
malus_domestica	MD05G1145100.v1.1
prunus_persica	Prupe.8G183200_v2.0.a1
pyrus_communis	pycom05g14030 pycom07g10800 pycom10g12460
rosa_chinensis	RchiOBHm_Chr6g0281671
rosa_laevigata	RLG00000012952
rosa_multiflora	Rmu_co8238379.1_g000001 Rmu_sc0019758.1_g000001
rosa_rugosa	Rorug06G0142300
rosa_samantha	Rh6AG255000 Rh6BG258400 Rh6CG257200 Rh6DG249400
rosa_wichuraiana	Rw6G022130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	877
AccI	GTMKAC	1 cut(s)	80
AccII	CGCG	1 cut(s)	507
AclWI	GGATC	3 cut(s)	24, 152, 165
AcsI	RAATTY	1 cut(s)	698
AcuI	CTGAAG	1 cut(s)	332
AfaI	GTAC	1 cut(s)	517
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	305, 400, 820
AjnI	CCWGG	1 cut(s)	474
AjuI	GAANNNNNNNTTGG	4 cut(s)	206, 238, 894, 926
AleI	CACNNNNGTG	1 cut(s)	545
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	3 cut(s)	24, 152, 165
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	3 cut(s)	173, 184, 480
ApeKI	GCWGC	6 cut(s)	41, 88, 134, 294, 370, 692
ApoI	RAATTY	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	507
AspS9I	GGNCC	3 cut(s)	174, 388, 472
AsuHPI	GGTGA	2 cut(s)	134, 231
AsuII	TTCGAA	1 cut(s)	579
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	388, 472
AxyI	CCTNAGG	1 cut(s)	525
BaeI	ACNNNNGTAYC	2 cut(s)	647, 680
BamHI	GGATCC	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	877
BanII	GRGCYC	1 cut(s)	269
BbvI	GCAGC	6 cut(s)	28, 75, 146, 306, 382, 679
BccI	CCATC	3 cut(s)	13, 458, 548
BcgI	CGANNNNNNTGC	4 cut(s)	70, 104, 867, 901
BciT130I	CCWGG	1 cut(s)	476
BcoDI	GTCTC	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	476
Bme18I	GGWCC	2 cut(s)	388, 472
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	3 cut(s)	174, 388, 472
BmiI	GGNNCC	3 cut(s)	159, 345, 879
BmrFI	CCNGG	1 cut(s)	476
BmsI	GCATC	7 cut(s)	100, 146, 492, 574, 597, 679, 754
Bpu14I	TTCGAA	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	890
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse118I	RCCGGY	1 cut(s)	722
Bse21I	CCTNAGG	1 cut(s)	525
Bse3DI	GCAATG	3 cut(s)	281, 447, 622
BseBI	CCWGG	1 cut(s)	476
BseDI	CCNNGG	1 cut(s)	890
BseGI	GGATG	1 cut(s)	694
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMI	GCAATG	3 cut(s)	281, 447, 622
BseMII	CTCAG	2 cut(s)	516, 789
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	6 cut(s)	28, 75, 146, 306, 382, 679
BseYI	CCCAGC	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	507
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	3 cut(s)	175, 186, 482
BshNI	GGYRCC	1 cut(s)	877
BsiEI	CGRYCG	1 cut(s)	115
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	3 cut(s)	155, 377, 723
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	407
BsmBI	CGTCTC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	3 cut(s)	175, 186, 482
BsoBI	CYCGRG	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	579
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	3 cut(s)	16, 112, 157
BspANI	GGCC	3 cut(s)	175, 186, 482
BspCNI	CTCAG	2 cut(s)	517, 790
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	3 cut(s)	159, 345, 879
BspMAI	CTGCAG	1 cut(s)	46
BspPI	GGATC	3 cut(s)	24, 152, 165
BspT104I	TTCGAA	1 cut(s)	579
BspT107I	GGYRCC	1 cut(s)	877
BsrDI	GCAATG	3 cut(s)	281, 447, 622
BsrFI	RCCGGY	1 cut(s)	722
BssAI	RCCGGY	1 cut(s)	722
BssECI	CCNNGG	1 cut(s)	890
BssMI	GATC	3 cut(s)	16, 112, 157
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	1 cut(s)	649
Bst6I	CTCTTC	1 cut(s)	329
BstBI	TTCGAA	1 cut(s)	579
BstDEI	CTNAG	3 cut(s)	525, 588, 798
BstF5I	GGATG	1 cut(s)	694
BstFNI	CGCG	1 cut(s)	507
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	3 cut(s)	19, 115, 160
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	3 cut(s)	16, 112, 157
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	4 cut(s)	151, 370, 373, 451
BstNI	CCWGG	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	474
BstSFI	CTRYAG	1 cut(s)	42
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	6 cut(s)	28, 75, 146, 306, 382, 679
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
Bsu36I	CCTNAGG	1 cut(s)	525
BsuRI	GGCC	3 cut(s)	175, 186, 482
BtsCI	GGATG	1 cut(s)	694
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	2 cut(s)	540, 645
CfoI	GCGC	1 cut(s)	507
Cfr10I	RCCGGY	1 cut(s)	722
Cfr13I	GGNCC	3 cut(s)	174, 388, 472
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	1 cut(s)	484
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	3 cut(s)	525, 588, 798
DpnI	GATC	3 cut(s)	18, 114, 159
DpnII	GATC	3 cut(s)	16, 112, 157
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
EciI	GGCGGA	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	269
Eco47I	GGWCC	2 cut(s)	388, 472
Eco57I	CTGAAG	1 cut(s)	332
Eco81I	CCTNAGG	1 cut(s)	525
Eco88I	CYCGRG	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	269
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	1 cut(s)	487
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	1 cut(s)	483
FblI	GTMKAC	1 cut(s)	80
FokI	GGATG	1 cut(s)	701
FriOI	GRGCYC	1 cut(s)	269
GlaI	GCGC	1 cut(s)	506
GsaI	CCCAGC	1 cut(s)	320
HaeIII	GGCC	3 cut(s)	175, 186, 482
HapII	CCGG	3 cut(s)	155, 377, 723
HhaI	GCGC	1 cut(s)	507
Hin1II	CATG	1 cut(s)	487
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	3 cut(s)	321, 424, 520
HpaII	CCGG	3 cut(s)	155, 377, 723
HphI	GGTGA	2 cut(s)	134, 231
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	5 cut(s)	142, 250, 423, 429, 941
Hpy188III	TCNNGA	6 cut(s)	14, 302, 359, 400, 524, 601
Hpy8I	GTNNAC	1 cut(s)	81
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	5 cut(s)	249, 279, 403, 820, 841
HpyCH4III	ACNGT	1 cut(s)	649
HpyCH4V	TGCA	6 cut(s)	44, 91, 286, 459, 564, 610
HpyF10VI	GCNNNNNNNGC	4 cut(s)	151, 370, 373, 451
HpyF3I	CTNAG	3 cut(s)	525, 588, 798
Hsp92II	CATG	1 cut(s)	487
HspAI	GCGC	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	16, 112, 157
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	6 cut(s)	28, 75, 146, 306, 382, 679
LweI	GCATC	7 cut(s)	100, 146, 492, 574, 597, 679, 754
MaeIII	GTNAC	3 cut(s)	641, 725, 924
MalI	GATC	3 cut(s)	18, 114, 159
MboI	GATC	3 cut(s)	16, 112, 157
MboII	GAAGA	8 cut(s)	264, 346, 392, 415, 593, 616, 803, 928
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	3 cut(s)	221, 679, 698
MlyI	GAGTC	1 cut(s)	315
MnlI	CCTC	9 cut(s)	176, 236, 330, 334, 472, 520, 585, 679, 885
MseI	TTAA	2 cut(s)	840, 855
MslI	CAYNNNNRTG	1 cut(s)	545
MspI	CCGG	3 cut(s)	155, 377, 723
MspR9I	CCNGG	1 cut(s)	476
Mva1269I	GAATGC	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	476
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	4 cut(s)	151, 370, 373, 451
NdeII	GATC	3 cut(s)	16, 112, 157
NlaIII	CATG	1 cut(s)	487
NlaIV	GGNNCC	3 cut(s)	159, 345, 879
NmeAIII	GCCGAG	1 cut(s)	915
NmuCI	GTSAC	2 cut(s)	725, 924
NspV	TTCGAA	1 cut(s)	579
OliI	CACNNNNGTG	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PctI	GAATGC	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	424, 520
PfoI	TCCNGGA	1 cut(s)	474
Ple19I	CGATCG	1 cut(s)	115
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	474
PspFI	CCCAGC	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	474
PspN4I	GGNNCC	3 cut(s)	159, 345, 879
PspPI	GGNCC	3 cut(s)	174, 388, 472
PstI	CTGCAG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	157
PvuI	CGATCG	1 cut(s)	115
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
RseI	CAYNNNNRTG	1 cut(s)	545
SalI	GTCGAC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	840, 855
Sau3AI	GATC	3 cut(s)	16, 112, 157
Sau96I	GGNCC	3 cut(s)	174, 388, 472
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	1 cut(s)	476
SduI	GDGCHC	1 cut(s)	269
SfaNI	GCATC	7 cut(s)	100, 146, 492, 574, 597, 679, 754
SfcI	CTRYAG	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	579
SinI	GGWCC	2 cut(s)	388, 472
SmiMI	CAYNNNNRTG	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
Sse9I	AATT	3 cut(s)	221, 679, 698
StyD4I	CCNGG	1 cut(s)	474
TaaI	ACNGT	1 cut(s)	649
TaqI	TCGA	5 cut(s)	80, 324, 332, 500, 579
TasI	AATT	3 cut(s)	221, 679, 698
TauI	GCSGC	5 cut(s)	154, 349, 367, 370, 376
TfiI	GAWTC	2 cut(s)	424, 520
Tru1I	TTAA	2 cut(s)	840, 855
Tru9I	TTAA	2 cut(s)	840, 855
TscAI	CASTG	2 cut(s)	547, 652
TseFI	GTSAC	2 cut(s)	725, 924
TseI	GCWGC	6 cut(s)	41, 88, 134, 294, 370, 692
Tsp45I	GTSAC	2 cut(s)	725, 924
TspDTI	ATGAA	2 cut(s)	422, 500
TspRI	CASTG	2 cut(s)	547, 652
VpaK11BI	GGWCC	2 cut(s)	388, 472
XapI	RAATTY	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.