Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019758.1

Orthogroup ID

OG0012429

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 660

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019758.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

aggagggagaaccctaatccgccattgcaggacagcagttttcttgagaagctcaagatgggtcttgacaagtcgaagagagagaagccccaggaaccggcggagcagccgccgccgcagcagcagccgccggaggaggccaatgagatattcaagaagatgaaggagacgggtctgattcccaatgcagtggccatgcttgatgggctctgcaaagatgggctggtccaggaggcaatgaagcttttcgggtcgatgcgcgaaaagggtactattcctgaggtggtgatatacactgctgtggtggaagggttttgcaaagcccagaagcctgaagatgctaagaggattttcaggaagatgcagggcaatgggattgttccgaatgcgtttagttacaatgtgttggtgcaggggttgtgtaggtgtgataagctggaggatgctgctgagttctgtggtgaaatgttggaagccggtcactcgccgaatgtgactacttttgtggggttggttgatggggtatgcaaggaaagtggcgtggaagaagctggaagtgtgattgggaagttgaagcacaagggatatatggttaatgagaaggctgttagagagtttttggataaaagggcaacgttttcgccagtggtttgggaagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

220

Amino Acids

24.37

Weight (kDa)

5.9

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38150 AT4G38150 AT4G38150
fragaria_vesca	FvH4_2g17180
malus_domestica	MD05G1145100.v1.1
prunus_persica	Prupe.8G183200_v2.0.a1
pyrus_communis	pycom05g14030 pycom07g10800 pycom10g12460
rosa_chinensis	RchiOBHm_Chr6g0281671
rosa_laevigata	RLG00000012952
rosa_multiflora	Rmu_co8238379.1_g000001 Rmu_sc0019758.1_g000001
rosa_rugosa	Rorug06G0142300
rosa_samantha	Rh6AG255000 Rh6BG258400 Rh6CG257200 Rh6DG249400
rosa_wichuraiana	Rw6G022130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	261
AciI	CCGC	6 cut(s)	20, 101, 110, 113, 116, 128
AclI	AACGTT	1 cut(s)	635
AcoI	YGGCCR	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	2 cut(s)	154, 574
AjnI	CCWGG	2 cut(s)	90, 228
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AleI	CACNNNNGTG	1 cut(s)	299
AluBI	AGCT	5 cut(s)	52, 244, 436, 551, 659
AluI	AGCT	5 cut(s)	52, 244, 436, 551, 659
Alw26I	GTCTC	1 cut(s)	161
AoxI	GGCC	2 cut(s)	138, 192
ApeKI	GCWGC	5 cut(s)	106, 118, 121, 124, 446
Asp700I	GAANNNNTTC	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	2 cut(s)	298, 473
AvaII	GGWCC	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	279
BalI	TGGCCA	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	210
BbvI	GCAGC	5 cut(s)	118, 130, 133, 136, 433
BccI	CCATC	4 cut(s)	52, 197, 212, 512
BcgI	CGANNNNNNTGC	2 cut(s)	621, 655
BciT130I	CCWGG	2 cut(s)	92, 230
BcoDI	GTCTC	1 cut(s)	161
BisI	GCNGC	9 cut(s)	107, 110, 113, 116, 119, 122, 125, 128, 447
BlsI	GCNGC	9 cut(s)	108, 111, 114, 117, 120, 123, 126, 129, 448
Bme1390I	CCNGG	2 cut(s)	92, 230
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	92, 230
BmsI	GCATC	4 cut(s)	246, 328, 351, 433
BpmI	CTGGAG	1 cut(s)	458
BpuEI	CTTGAG	2 cut(s)	38, 65
BsaJI	CCNNGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse118I	RCCGGY	2 cut(s)	97, 476
Bse1I	ACTGG	1 cut(s)	644
Bse21I	CCTNAGG	1 cut(s)	279
Bse3DI	GCAATG	3 cut(s)	23, 243, 376
BseBI	CCWGG	2 cut(s)	92, 230
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	3 cut(s)	23, 243, 376
BseMII	CTCAG	2 cut(s)	270, 441
BseNI	ACTGG	1 cut(s)	644
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	5 cut(s)	118, 130, 133, 136, 433
BsgI	GTGCAG	1 cut(s)	431
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	140, 194
BsiSI	CCGG	3 cut(s)	98, 131, 477
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	161
BsmBI	CGTCTC	1 cut(s)	161
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	140, 194
Bsp1286I	GDGCHC	1 cut(s)	210
BspACI	CCGC	6 cut(s)	20, 101, 110, 113, 116, 128
BspANI	GGCC	2 cut(s)	140, 194
BspCNI	CTCAG	2 cut(s)	271, 442
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	96
BsrDI	GCAATG	3 cut(s)	23, 243, 376
BsrFI	RCCGGY	2 cut(s)	97, 476
BsrI	ACTGG	1 cut(s)	644
BssAI	RCCGGY	2 cut(s)	97, 476
BssECI	CCNNGG	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	92, 230
Bst6I	CTCTTC	1 cut(s)	71
BstDEI	CTNAG	3 cut(s)	279, 342, 450
BstF5I	GGATG	1 cut(s)	448
BstFNI	CGCG	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 115, 118, 121, 124, 127, 205
BstNI	CCWGG	2 cut(s)	92, 230
BstSCI	CCNGG	2 cut(s)	90, 228
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	5 cut(s)	118, 130, 133, 136, 433
BstXI	CCANNNNNNTGG	2 cut(s)	190, 651
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	140, 194
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	2 cut(s)	195, 294
BtsIMutI	CAGTG	3 cut(s)	195, 294, 651
CfoI	GCGC	1 cut(s)	261
Cfr10I	RCCGGY	2 cut(s)	97, 476
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	270
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	1 cut(s)	196
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	3 cut(s)	279, 342, 450
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
EciI	GGCGGA	2 cut(s)	9, 116
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	354
Eco81I	CCTNAGG	1 cut(s)	279
EcoRII	CCWGG	2 cut(s)	90, 228
EcoT38I	GRGCYC	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	1 cut(s)	199
FaiI	YATR	5 cut(s)	197, 292, 526, 588, 590
FatI	CATG	1 cut(s)	195
Fnu4HI	GCNGC	9 cut(s)	107, 110, 113, 116, 119, 122, 125, 128, 447
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	9 cut(s)	107, 110, 113, 116, 119, 122, 125, 128, 447
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	9 cut(s)	107, 110, 113, 116, 119, 122, 125, 128, 447
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	2 cut(s)	140, 194
HapII	CCGG	3 cut(s)	98, 131, 477
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	3 cut(s)	98, 131, 477
HphI	GGTGA	2 cut(s)	298, 473
Hpy188I	TCNGA	2 cut(s)	177, 384
Hpy188III	TCNNGA	6 cut(s)	44, 55, 65, 154, 278, 355
HpyAV	CCTTC	3 cut(s)	157, 302, 595
HpyCH4IV	ACGT	1 cut(s)	635
HpyCH4V	TGCA	7 cut(s)	28, 188, 213, 318, 364, 412, 528
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 115, 118, 121, 124, 127, 205
HpyF3I	CTNAG	3 cut(s)	279, 342, 450
HpySE526I	ACGT	1 cut(s)	635
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	5 cut(s)	118, 130, 133, 136, 433
LweI	GCATC	4 cut(s)	246, 328, 351, 433
MaeII	ACGT	1 cut(s)	635
MaeIII	GTNAC	3 cut(s)	395, 479, 493
MboII	GAAGA	5 cut(s)	88, 169, 347, 370, 557
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	194
MluNI	TGGCCA	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	6 cut(s)	127, 130, 226, 274, 339, 433
Mox20I	TGGCCA	1 cut(s)	194
MroXI	GAANNNNTTC	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	1 cut(s)	299
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	3 cut(s)	98, 131, 477
MspR9I	CCNGG	2 cut(s)	92, 230
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	2 cut(s)	92, 230
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	7 cut(s)	112, 115, 118, 121, 124, 127, 205
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	479, 493
OliI	CACNNNNGTG	1 cut(s)	299
PctI	GAATGC	1 cut(s)	391
PdmI	GAANNNNTTC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	178
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	9 cut(s)	108, 111, 114, 117, 120, 123, 126, 129, 448
Psp1406I	AACGTT	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	90, 228
PspGI	CCWGG	2 cut(s)	90, 228
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	226
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
RseI	CAYNNNNRTG	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	9 cut(s)	107, 110, 113, 116, 119, 122, 125, 128, 447
Sau96I	GGNCC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	92, 230
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	7 cut(s)	54, 246, 285, 428, 438, 553, 638
SfaNI	GCATC	4 cut(s)	246, 328, 351, 433
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	299
SmlI	CTYRAG	2 cut(s)	44, 53
SmoI	CTYRAG	2 cut(s)	44, 53
SsiI	CCGC	6 cut(s)	20, 101, 110, 113, 116, 128
StyD4I	CCNGG	2 cut(s)	90, 228
TaiI	ACGT	1 cut(s)	638
TaqI	TCGA	2 cut(s)	74, 254
TauI	GCSGC	4 cut(s)	112, 115, 118, 130
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	3 cut(s)	195, 301, 651
TseFI	GTSAC	2 cut(s)	479, 493
TseI	GCWGC	5 cut(s)	106, 118, 121, 124, 446
Tsp45I	GTSAC	2 cut(s)	479, 493
TspDTI	ATGAA	2 cut(s)	176, 254
TspRI	CASTG	3 cut(s)	195, 301, 651
VpaK11BI	GGWCC	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.