Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38150 AT4G38150 AT4G38150 |
| fragaria_vesca | FvH4_2g17180 |
| malus_domestica | MD05G1145100.v1.1 |
| prunus_persica | Prupe.8G183200_v2.0.a1 |
| pyrus_communis | pycom05g14030 pycom07g10800 pycom10g12460 |
| rosa_chinensis | RchiOBHm_Chr6g0281671 |
| rosa_laevigata | RLG00000012952 |
| rosa_multiflora | Rmu_co8238379.1_g000001 Rmu_sc0019758.1_g000001 |
| rosa_rugosa | Rorug06G0142300 |
| rosa_samantha | Rh6AG255000 Rh6BG258400 Rh6CG257200 Rh6DG249400 |
| rosa_wichuraiana | Rw6G022130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 889 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 909 |
| AciI | CCGC | 4 cut(s) | 138, 290, 377, 517 |
| AcoI | YGGCCR | 1 cut(s) | 450 |
| AcsI | RAATTY | 2 cut(s) | 710, 943 |
| AcuI | CTGAAG | 1 cut(s) | 411 |
| AcyI | GRCGYC | 1 cut(s) | 492 |
| AfaI | GTAC | 1 cut(s) | 529 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 197, 909 |
| AgsI | TTSAA | 7 cut(s) | 87, 236, 317, 412, 593, 710, 832 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 804, 836 |
| AleI | CACNNNNGTG | 1 cut(s) | 557 |
| Alw21I | GWGCWC | 1 cut(s) | 177 |
| Alw26I | GTCTC | 2 cut(s) | 419, 437 |
| AoxI | GGCC | 2 cut(s) | 199, 450 |
| ApeKI | GCWGC | 1 cut(s) | 135 |
| ApoI | RAATTY | 2 cut(s) | 710, 943 |
| AsuHPI | GGTGA | 3 cut(s) | 152, 246, 735 |
| AxyI | CCTNAGG | 1 cut(s) | 537 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 659, 692 |
| BalI | TGGCCA | 1 cut(s) | 452 |
| BanI | GGYRCC | 1 cut(s) | 889 |
| BanII | GRGCYC | 1 cut(s) | 177 |
| Bbv12I | GWGCWC | 1 cut(s) | 177 |
| BbvI | GCAGC | 1 cut(s) | 147 |
| BccI | CCATC | 5 cut(s) | 13, 217, 455, 470, 560 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 88, 122, 879, 913 |
| BcoDI | GTCTC | 2 cut(s) | 419, 437 |
| BisI | GCNGC | 2 cut(s) | 136, 377 |
| BlsI | GCNGC | 2 cut(s) | 137, 378 |
| BmiI | GGNNCC | 1 cut(s) | 891 |
| BmsI | GCATC | 4 cut(s) | 504, 586, 609, 691 |
| BpmI | CTGGAG | 1 cut(s) | 153 |
| BpuEI | CTTGAG | 2 cut(s) | 308, 345 |
| BsaHI | GRCGYC | 1 cut(s) | 492 |
| BsaI | GGTCTC | 1 cut(s) | 437 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 197, 909 |
| Bse118I | RCCGGY | 1 cut(s) | 734 |
| Bse21I | CCTNAGG | 1 cut(s) | 537 |
| Bse3DI | GCAATG | 2 cut(s) | 293, 634 |
| BseGI | GGATG | 2 cut(s) | 209, 706 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 197, 909 |
| BseMI | GCAATG | 2 cut(s) | 293, 634 |
| BseMII | CTCAG | 1 cut(s) | 528 |
| BseRI | GAGGAG | 1 cut(s) | 286 |
| BseXI | GCAGC | 1 cut(s) | 147 |
| BseYI | CCCAGC | 1 cut(s) | 381 |
| Bsh1285I | CGRYCG | 1 cut(s) | 19 |
| BshFI | GGCC | 2 cut(s) | 201, 452 |
| BshNI | GGYRCC | 1 cut(s) | 889 |
| BsiEI | CGRYCG | 1 cut(s) | 19 |
| BsiHKAI | GWGCWC | 1 cut(s) | 177 |
| BsiSI | CCGG | 1 cut(s) | 735 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 197, 909 |
| BsmAI | GTCTC | 2 cut(s) | 419, 437 |
| BsmBI | CGTCTC | 1 cut(s) | 419 |
| BsnI | GGCC | 2 cut(s) | 201, 452 |
| Bso31I | GGTCTC | 1 cut(s) | 437 |
| Bsp1286I | GDGCHC | 1 cut(s) | 177 |
| Bsp143I | GATC | 1 cut(s) | 130 |
| BspACI | CCGC | 4 cut(s) | 138, 290, 377, 517 |
| BspANI | GGCC | 2 cut(s) | 201, 452 |
| BspCNI | CTCAG | 1 cut(s) | 529 |
| BspLI | GGNNCC | 1 cut(s) | 891 |
| BspT107I | GGYRCC | 1 cut(s) | 889 |
| BspTNI | GGTCTC | 1 cut(s) | 437 |
| BsrDI | GCAATG | 2 cut(s) | 293, 634 |
| BsrFI | RCCGGY | 1 cut(s) | 734 |
| BssAI | RCCGGY | 1 cut(s) | 734 |
| BssMI | GATC | 1 cut(s) | 130 |
| BssNI | GRCGYC | 1 cut(s) | 492 |
| Bst4CI | ACNGT | 3 cut(s) | 17, 661, 907 |
| Bst6I | CTCTTC | 2 cut(s) | 63, 237 |
| BstACI | GRCGYC | 1 cut(s) | 492 |
| BstDEI | CTNAG | 3 cut(s) | 27, 537, 600 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 195 |
| BstF5I | GGATG | 2 cut(s) | 209, 706 |
| BstKTI | GATC | 1 cut(s) | 133 |
| BstMAI | GTCTC | 2 cut(s) | 419, 437 |
| BstMBI | GATC | 1 cut(s) | 130 |
| BstMCI | CGRYCG | 1 cut(s) | 19 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 382, 463 |
| BstV1I | GCAGC | 1 cut(s) | 147 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 448 |
| Bsu36I | CCTNAGG | 1 cut(s) | 537 |
| BsuRI | GGCC | 2 cut(s) | 201, 452 |
| BtsCI | GGATG | 2 cut(s) | 209, 706 |
| BtsI | GCAGTG | 1 cut(s) | 552 |
| BtsIMutI | CAGTG | 3 cut(s) | 552, 657, 903 |
| Cfr10I | RCCGGY | 1 cut(s) | 734 |
| CseI | GACGC | 2 cut(s) | 98, 500 |
| Csp6I | GTAC | 1 cut(s) | 528 |
| CviAII | CATG | 2 cut(s) | 454, 496 |
| CviQI | GTAC | 1 cut(s) | 528 |
| DdeI | CTNAG | 3 cut(s) | 27, 537, 600 |
| DpnI | GATC | 1 cut(s) | 132 |
| DpnII | GATC | 1 cut(s) | 130 |
| EaeI | YGGCCR | 1 cut(s) | 450 |
| Eam1104I | CTCTTC | 2 cut(s) | 63, 237 |
| EarI | CTCTTC | 2 cut(s) | 63, 237 |
| EciI | GGCGGA | 1 cut(s) | 279 |
| Ecl136II | GAGCTC | 1 cut(s) | 175 |
| Eco24I | GRGCYC | 1 cut(s) | 177 |
| Eco31I | GGTCTC | 1 cut(s) | 437 |
| Eco53kI | GAGCTC | 1 cut(s) | 175 |
| Eco57I | CTGAAG | 1 cut(s) | 411 |
| Eco81I | CCTNAGG | 1 cut(s) | 537 |
| EcoICRI | GAGCTC | 1 cut(s) | 175 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 195 |
| EcoT38I | GRGCYC | 1 cut(s) | 177 |
| Esp3I | CGTCTC | 1 cut(s) | 419 |
| FaeI | CATG | 2 cut(s) | 457, 499 |
| FaiI | YATR | 6 cut(s) | 179, 455, 497, 548, 550, 681 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 20, 52 |
| FatI | CATG | 2 cut(s) | 453, 495 |
| FauI | CCCGC | 1 cut(s) | 510 |
| Fnu4HI | GCNGC | 2 cut(s) | 136, 377 |
| FokI | GGATG | 2 cut(s) | 196, 713 |
| FriOI | GRGCYC | 1 cut(s) | 177 |
| Fsp4HI | GCNGC | 2 cut(s) | 136, 377 |
| GluI | GCNGC | 2 cut(s) | 136, 377 |
| GsaI | CCCAGC | 1 cut(s) | 385 |
| GsuI | CTGGAG | 1 cut(s) | 153 |
| HaeIII | GGCC | 2 cut(s) | 201, 452 |
| HapII | CCGG | 1 cut(s) | 735 |
| HgaI | GACGC | 2 cut(s) | 98, 500 |
| Hin1I | GRCGYC | 1 cut(s) | 492 |
| Hin1II | CATG | 2 cut(s) | 457, 499 |
| HincII | GTYRAC | 1 cut(s) | 370 |
| HindII | GTYRAC | 1 cut(s) | 370 |
| HindIII | AAGCTT | 3 cut(s) | 326, 500, 587 |
| HpaII | CCGG | 1 cut(s) | 735 |
| HphI | GGTGA | 3 cut(s) | 152, 246, 735 |
| Hpy166II | GTNNAC | 2 cut(s) | 42, 370 |
| Hpy188I | TCNGA | 2 cut(s) | 73, 265 |
| Hpy188III | TCNNGA | 9 cut(s) | 170, 314, 335, 362, 412, 488, 536, 613, 925 |
| Hpy8I | GTNNAC | 2 cut(s) | 42, 370 |
| Hpy99I | CGWCG | 1 cut(s) | 114 |
| HpyAV | CCTTC | 3 cut(s) | 294, 415, 853 |
| HpyCH4III | ACNGT | 3 cut(s) | 17, 661, 907 |
| HpyCH4V | TGCA | 4 cut(s) | 298, 471, 576, 622 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 382, 463 |
| HpyF3I | CTNAG | 3 cut(s) | 27, 537, 600 |
| Hsp92I | GRCGYC | 1 cut(s) | 492 |
| Hsp92II | CATG | 2 cut(s) | 457, 499 |
| Kzo9I | GATC | 1 cut(s) | 130 |
| LmnI | GCTCC | 1 cut(s) | 125 |
| Lsp1109I | GCAGC | 1 cut(s) | 147 |
| LweI | GCATC | 4 cut(s) | 504, 586, 609, 691 |
| MaeIII | GTNAC | 3 cut(s) | 653, 737, 936 |
| MalI | GATC | 1 cut(s) | 132 |
| MboI | GATC | 1 cut(s) | 130 |
| MboII | GAAGA | 9 cut(s) | 50, 224, 404, 427, 605, 628, 815, 913, 940 |
| MhlI | GDGCHC | 1 cut(s) | 177 |
| MlsI | TGGCCA | 1 cut(s) | 452 |
| MluCI | AATT | 4 cut(s) | 45, 236, 710, 943 |
| MluNI | TGGCCA | 1 cut(s) | 452 |
| MmeI | TCCRAC | 1 cut(s) | 675 |
| Mox20I | TGGCCA | 1 cut(s) | 452 |
| MscI | TGGCCA | 1 cut(s) | 452 |
| MseI | TTAA | 2 cut(s) | 116, 852 |
| MslI | CAYNNNNRTG | 1 cut(s) | 557 |
| Msp20I | TGGCCA | 1 cut(s) | 452 |
| MspA1I | CMGCKG | 2 cut(s) | 128, 138 |
| MspI | CCGG | 1 cut(s) | 735 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 382, 463 |
| NdeII | GATC | 1 cut(s) | 130 |
| NlaIII | CATG | 2 cut(s) | 457, 499 |
| NlaIV | GGNNCC | 1 cut(s) | 891 |
| NmuCI | GTSAC | 2 cut(s) | 737, 936 |
| OliI | CACNNNNGTG | 1 cut(s) | 557 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 95 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 909 |
| PkrI | GCNGC | 2 cut(s) | 137, 378 |
| Psp124BI | GAGCTC | 1 cut(s) | 177 |
| PspFI | CCCAGC | 1 cut(s) | 381 |
| PspN4I | GGNNCC | 1 cut(s) | 891 |
| PvuII | CAGCTG | 1 cut(s) | 128 |
| RsaI | GTAC | 1 cut(s) | 529 |
| RsaNI | GTAC | 1 cut(s) | 528 |
| RseI | CAYNNNNRTG | 1 cut(s) | 557 |
| SacI | GAGCTC | 1 cut(s) | 177 |
| SaqAI | TTAA | 2 cut(s) | 116, 852 |
| SatI | GCNGC | 2 cut(s) | 136, 377 |
| Sau3AI | GATC | 1 cut(s) | 130 |
| SduI | GDGCHC | 1 cut(s) | 177 |
| SfaNI | GCATC | 4 cut(s) | 504, 586, 609, 691 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 557 |
| SmlI | CTYRAG | 2 cut(s) | 323, 360 |
| SmoI | CTYRAG | 2 cut(s) | 323, 360 |
| Sse9I | AATT | 4 cut(s) | 45, 236, 710, 943 |
| SsiI | CCGC | 4 cut(s) | 138, 290, 377, 517 |
| SstI | GAGCTC | 1 cut(s) | 177 |
| TaaI | ACNGT | 3 cut(s) | 17, 661, 907 |
| TaqI | TCGA | 2 cut(s) | 98, 512 |
| TasI | AATT | 4 cut(s) | 45, 236, 710, 943 |
| TauI | GCSGC | 1 cut(s) | 379 |
| Tru1I | TTAA | 2 cut(s) | 116, 852 |
| Tru9I | TTAA | 2 cut(s) | 116, 852 |
| TscAI | CASTG | 3 cut(s) | 559, 664, 910 |
| TseFI | GTSAC | 2 cut(s) | 737, 936 |
| TseI | GCWGC | 1 cut(s) | 135 |
| Tsp45I | GTSAC | 2 cut(s) | 737, 936 |
| TspDTI | ATGAA | 3 cut(s) | 57, 434, 512 |
| TspRI | CASTG | 3 cut(s) | 559, 664, 910 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 909 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 195 |
| XapI | RAATTY | 2 cut(s) | 710, 943 |