Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0012429

Physical Location & Seq

Genomic Coordinates Forward (+)

11013389 .. 11013717

Gene Structure 329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g10800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGCTGCTTTTCTGTCTTCGGTTTTGCCTCTGGGACTCGACAAGTCGAAGAGGGAGGAGCCTCAAGAAGTTCCCGAGCCACCACAGGCTGCGGAAAGAAGCGGACCAGATATTCATGAAGATGAAGGAGACGGGTCTAATTCCGAATGTGGTGGCAATGCCTGACGGGCTATGCAAAGATGCGTTGGTCCAGGAGGCCATGAAGCTTTTTGGGTCGATGCGCGAAAAGGGTAATATTCCTGAGGTTGTTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

85

Amino Acids

9.7

Weight (kDa)

9.66

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38150 AT4G38150 AT4G38150
fragaria_vesca	FvH4_2g17180
malus_domestica	MD05G1145100.v1.1
prunus_persica	Prupe.8G183200_v2.0.a1
pyrus_communis	pycom05g14030 pycom07g10800 pycom10g12460
rosa_chinensis	RchiOBHm_Chr6g0281671
rosa_laevigata	RLG00000012952
rosa_multiflora	Rmu_co8238379.1_g000001 Rmu_sc0019758.1_g000001
rosa_rugosa	Rorug06G0142300
rosa_samantha	Rh6AG255000 Rh6BG258400 Rh6CG257200 Rh6DG249400
rosa_wichuraiana	Rw6G022130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	222
AciI	CCGC	2 cut(s)	91, 101
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	73
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	2 cut(s)	4, 88
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	103, 187
AvaI	CYCGRG	1 cut(s)	73
AvaII	GGWCC	2 cut(s)	103, 187
AxyI	CCTNAGG	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	122
BglI	GCCNNNNNGGC	1 cut(s)	166
BisI	GCNGC	2 cut(s)	5, 89
BlsI	GCNGC	2 cut(s)	6, 90
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	2 cut(s)	103, 187
BmeT110I	CYCGRG	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	103, 187
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	2 cut(s)	169, 207
BpiI	GAAGAC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	47
Bse21I	CCTNAGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	191
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	47
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	73
BspACI	CCGC	2 cut(s)	91, 101
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	222
BstMAI	GTCTC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	8
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	197
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	103, 187
CviAII	CATG	2 cut(s)	115, 199
CviJI	RGCY	6 cut(s)	60, 78, 88, 169, 197, 205
CviKI_1	RGCY	6 cut(s)	60, 78, 88, 169, 197, 205
DdeI	CTNAG	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco47I	GGWCC	2 cut(s)	103, 187
Eco81I	CCTNAGG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	2 cut(s)	118, 202
FaiI	YATR	5 cut(s)	116, 172, 200, 251, 253
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	2 cut(s)	114, 198
Fnu4HI	GCNGC	2 cut(s)	5, 89
Fsp4HI	GCNGC	2 cut(s)	5, 89
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	2 cut(s)	5, 89
HaeIII	GGCC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	118, 202
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	1 cut(s)	35
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	4 cut(s)	64, 73, 115, 239
HpyAV	CCTTC	1 cut(s)	118
HpyCH4V	TGCA	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	118, 202
HspAI	GCGC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	6 cut(s)	16, 70, 119, 174, 176, 203
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	2 cut(s)	169, 207
MboII	GAAGA	3 cut(s)	8, 60, 130
MluCI	AATT	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	6 cut(s)	38, 44, 48, 71, 187, 235
MslI	CAYNNNNRTG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	118, 202
NlaIV	GGNNCC	1 cut(s)	59
PagI	TCATGA	1 cut(s)	114
PfoI	TCCNGGA	1 cut(s)	189
PkrI	GCNGC	2 cut(s)	6, 90
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	59
PspPI	GGNCC	2 cut(s)	103, 187
RseI	CAYNNNNRTG	1 cut(s)	119
SatI	GCNGC	2 cut(s)	5, 89
Sau96I	GGNCC	2 cut(s)	103, 187
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	2 cut(s)	207, 246
SfaNI	GCATC	2 cut(s)	169, 207
SinI	GGWCC	2 cut(s)	103, 187
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	2 cut(s)	91, 101
SspI	AATATT	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	189
TaqI	TCGA	3 cut(s)	38, 46, 215
TasI	AATT	1 cut(s)	138
TseI	GCWGC	2 cut(s)	4, 88
TspDTI	ATGAA	4 cut(s)	103, 131, 137, 215
VpaK11BI	GGWCC	2 cut(s)	103, 187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.