Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012429

Physical Location & Seq

Genomic Coordinates Forward (+)

17527695 .. 17529174

Gene Structure 1480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g14030.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGATTCAATCAGTTTCAGCAGAAGGGAATAGCAAAAGAGAGAGACTTTGCAGTTGTTCCGGCAGCCGAGATAGCCAAAGCCTTATCTGTTGGTTTTACTACGTCTCTCTCTCTCCCCCCATCTCAAGCAGAGGAGAAAAGACCGAAATTCCTCATTTACCCTCGTTGTCTTCTCAACTAACCAATATATCCTTGTCTCGCGATCACAGTCTTTCTCGGTTCGGATTGAAACCCCAAAGCCACTCTCCCTTAGACCCTAACCAGAAAAACTCGAAAGATCCGTTTCAGGGTCGGGCTTCCAAGCACATATTTTCCGCAATTTCTAACCCATGTCGCCAATCCACGAAGTTGCGTCGTTTTAGCACCGCCGCCGATCGTGGCGGTGAAATGGAAGCAGCACCAGCGCAACAGCCGCCGGATCCCATACCCAATAGGCCCTTGAGAGGCCAAAGTCTATCAAATCCCCAAACCTCCAATCTCCAATTCTTCAACAAAAACTCACCCATTTCGGCGAGAAGGGGAGAGAGCCCTTCTTCTCCGCCATTGCAGGACAGCAGCTTTCTCGAAAAGCTGAAGCTGGGTCTCGACAAAGGCGCGGAAGAAGCGGACCAGATAATCAAGAAGATGAAGGAGACGGGTCTGATTCCGAATGCGGTGGCAATGCTTGACGGGCTATGCAAAGATGGGCTGGTCCAGGAGGCCATGAAACTTTTTGGGTCGATGCGCGAAAAGGGTACAATTCCTGAGGTTGTTATATACACTGCTGTGGTTGATGGGTTTTGCAAAGCACAGAAGTTCGAAGATACTAAGAGGATTTTCAGGAAGATGCAGAGCAATGGGATTGTTCCTAATGCTTTTAGTTACACTGTGTTGATACAGGGGTTGTATAGAGCTAATAATTTGGAGGATGCTGCTGAATTTTGTAGCGAAATGTTGGAAGCCGGTTACTCGTCCAATGTAGCTACTTTTGTCGAGTTGATTGATGTGATTTGTAAGGAAAAGGATATGGAAGAAGCTGAGAGTGTTATTGGGAAGTTGAAGCAGAAGGGGTATTTGGTTAATGAGAAGGCTGTTAAAGAGTTTTTGGACAAAAGGGCACCATTTTCGCCGAGGGTTTGGGAAGCTATCTTTGGGAAGAATAAAAATTGTAAGTTTTGCTGTTCTGCCGTTGATCATTTTAGATTGAGTTTTGTTGACTTTGTTAAAATTGCGTTGCCCCATTGTATGAGGGGCTGCATGAGACCCTTGGAAATTCCCTCTGTCGATAATGATCACGATTCCTTGGGCTTTATATGGTTTTCTAGGTTCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

438

Amino Acids

48.72

Weight (kDa)

8.74

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38150 AT4G38150 AT4G38150
fragaria_vesca	FvH4_2g17180
malus_domestica	MD05G1145100.v1.1
prunus_persica	Prupe.8G183200_v2.0.a1
pyrus_communis	pycom05g14030 pycom07g10800 pycom10g12460
rosa_chinensis	RchiOBHm_Chr6g0281671
rosa_laevigata	RLG00000012952
rosa_multiflora	Rmu_co8238379.1_g000001 Rmu_sc0019758.1_g000001
rosa_rugosa	Rorug06G0142300
rosa_samantha	Rh6AG255000 Rh6BG258400 Rh6CG257200 Rh6DG249400
rosa_wichuraiana	Rw6G022130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1096
AccII	CGCG	3 cut(s)	201, 596, 726
AciI	CCGC	9 cut(s)	315, 366, 369, 381, 413, 539, 596, 605, 653
AclWI	GGATC	3 cut(s)	272, 413, 426
AcsI	RAATTY	3 cut(s)	147, 917, 1251
AcuI	CTGAAG	1 cut(s)	593
AfaI	GTAC	1 cut(s)	736
AfiI	CCNNNNNNNGG	2 cut(s)	287, 443
AgsI	TTSAA	4 cut(s)	8, 229, 490, 1039
AjnI	CCWGG	1 cut(s)	693
AjuI	GAANNNNNNNTTGG	6 cut(s)	467, 499, 1037, 1069, 1113, 1145
AleI	CACNNNNGTG	1 cut(s)	764
AluBI	AGCT	7 cut(s)	558, 571, 577, 893, 962, 1016, 1124
AluI	AGCT	7 cut(s)	558, 571, 577, 893, 962, 1016, 1124
Alw26I	GTCTC	6 cut(s)	37, 109, 201, 587, 626, 1234
AlwI	GGATC	3 cut(s)	272, 413, 426
AoxI	GGCC	3 cut(s)	434, 445, 699
ApeKI	GCWGC	5 cut(s)	63, 395, 555, 911, 1233
ApoI	RAATTY	3 cut(s)	147, 917, 1251
AspLEI	GCGC	3 cut(s)	406, 596, 726
AspS9I	GGNCC	3 cut(s)	435, 607, 691
AsuHPI	GGTGA	2 cut(s)	395, 492
AsuII	TTCGAA	1 cut(s)	798
AvaII	GGWCC	2 cut(s)	607, 691
AxyI	CCTNAGG	1 cut(s)	744
BaeGI	GKGCMC	1 cut(s)	1099
BaeI	ACNNNNGTAYC	2 cut(s)	866, 899
BamHI	GGATCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	1096
BanII	GRGCYC	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	5 cut(s)	75, 407, 567, 898, 1220
BccI	CCATC	3 cut(s)	128, 677, 767
BceAI	ACGGC	1 cut(s)	1151
BcgI	CGANNNNNNTGC	4 cut(s)	544, 578, 1086, 1120
BciT130I	CCWGG	1 cut(s)	695
BclI	TGATCA	2 cut(s)	1171, 1270
BcoDI	GTCTC	6 cut(s)	37, 109, 201, 587, 626, 1234
BfaI	CTAG	1 cut(s)	1302
BisI	GCNGC	7 cut(s)	64, 369, 396, 413, 556, 912, 1234
BlsI	GCNGC	7 cut(s)	65, 370, 397, 414, 557, 913, 1235
Bme1390I	CCNGG	1 cut(s)	695
Bme18I	GGWCC	2 cut(s)	607, 691
BmgT120I	GGNCC	3 cut(s)	435, 607, 691
BmiI	GGNNCC	2 cut(s)	420, 1098
BmrFI	CCNGG	1 cut(s)	695
BmsI	GCATC	3 cut(s)	711, 816, 898
BpiI	GAAGAC	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	798
BpuEI	CTTGAG	2 cut(s)	109, 460
BsaBI	GATNNNNATC	1 cut(s)	1269
BsaI	GGTCTC	2 cut(s)	587, 1234
BsaJI	CCNNGG	3 cut(s)	1109, 1245, 1281
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 443
Bse118I	RCCGGY	1 cut(s)	941
Bse21I	CCTNAGG	1 cut(s)	744
Bse3DI	GCAATG	3 cut(s)	542, 666, 841
Bse8I	GATNNNNATC	1 cut(s)	1269
BseBI	CCWGG	1 cut(s)	695
BseDI	CCNNGG	3 cut(s)	1109, 1245, 1281
BseGI	GGATG	1 cut(s)	913
BseJI	GATNNNNATC	1 cut(s)	1269
BseLI	CCNNNNNNNGG	2 cut(s)	287, 443
BseMI	GCAATG	3 cut(s)	542, 666, 841
BseMII	CTCAG	2 cut(s)	735, 1008
BseRI	GAGGAG	1 cut(s)	147
BseSI	GKGCMC	1 cut(s)	1099
BseXI	GCAGC	5 cut(s)	75, 407, 567, 898, 1220
BseYI	CCCAGC	1 cut(s)	577
Bsh1236I	CGCG	3 cut(s)	201, 596, 726
Bsh1285I	CGRYCG	1 cut(s)	376
BshFI	GGCC	3 cut(s)	436, 447, 701
BshNI	GGYRCC	1 cut(s)	1096
BsiEI	CGRYCG	1 cut(s)	376
BsiSI	CCGG	3 cut(s)	60, 416, 942
BslI	CCNNNNNNNGG	2 cut(s)	287, 443
BsmAI	GTCTC	6 cut(s)	37, 109, 201, 587, 626, 1234
BsmBI	CGTCTC	2 cut(s)	109, 626
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	3 cut(s)	436, 447, 701
Bso31I	GGTCTC	2 cut(s)	587, 1234
Bsp119I	TTCGAA	1 cut(s)	798
Bsp1286I	GDGCHC	2 cut(s)	530, 1099
Bsp143I	GATC	6 cut(s)	202, 277, 373, 418, 1171, 1270
Bsp68I	TCGCGA	1 cut(s)	201
BspACI	CCGC	9 cut(s)	315, 366, 369, 381, 413, 539, 596, 605, 653
BspANI	GGCC	3 cut(s)	436, 447, 701
BspCNI	CTCAG	2 cut(s)	736, 1009
BspFNI	CGCG	3 cut(s)	201, 596, 726
BspLI	GGNNCC	2 cut(s)	420, 1098
BspPI	GGATC	3 cut(s)	272, 413, 426
BspT104I	TTCGAA	1 cut(s)	798
BspT107I	GGYRCC	1 cut(s)	1096
BspTNI	GGTCTC	2 cut(s)	587, 1234
BsrDI	GCAATG	3 cut(s)	542, 666, 841
BsrFI	RCCGGY	1 cut(s)	941
BssAI	RCCGGY	1 cut(s)	941
BssECI	CCNNGG	3 cut(s)	1109, 1245, 1281
BssMI	GATC	6 cut(s)	202, 277, 373, 418, 1171, 1270
BssT1I	CCWWGG	2 cut(s)	1245, 1281
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	2 cut(s)	209, 868
BstBI	TTCGAA	1 cut(s)	798
BstDEI	CTNAG	4 cut(s)	250, 744, 807, 1017
BstF5I	GGATG	1 cut(s)	913
BstFNI	CGCG	3 cut(s)	201, 596, 726
BstHHI	GCGC	3 cut(s)	406, 596, 726
BstKTI	GATC	6 cut(s)	205, 280, 376, 421, 1174, 1273
BstMAI	GTCTC	6 cut(s)	37, 109, 201, 587, 626, 1234
BstMBI	GATC	6 cut(s)	202, 277, 373, 418, 1171, 1270
BstMCI	CGRYCG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 401, 412, 602, 670
BstNI	CCWGG	1 cut(s)	695
BstSCI	CCNGG	1 cut(s)	693
BstSLI	GKGCMC	1 cut(s)	1099
BstUI	CGCG	3 cut(s)	201, 596, 726
BstV1I	GCAGC	5 cut(s)	75, 407, 567, 898, 1220
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	2 cut(s)	277, 418
BstYI	RGATCY	2 cut(s)	277, 418
Bsu36I	CCTNAGG	1 cut(s)	744
BsuRI	GGCC	3 cut(s)	436, 447, 701
BtsCI	GGATG	1 cut(s)	913
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	2 cut(s)	759, 864
BtuMI	TCGCGA	1 cut(s)	201
CfoI	GCGC	3 cut(s)	406, 596, 726
Cfr10I	RCCGGY	1 cut(s)	941
Cfr13I	GGNCC	3 cut(s)	435, 607, 691
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	735
CviAII	CATG	3 cut(s)	330, 703, 1237
CviQI	GTAC	1 cut(s)	735
DdeI	CTNAG	4 cut(s)	250, 744, 807, 1017
DpnI	GATC	6 cut(s)	204, 279, 375, 420, 1173, 1272
DpnII	GATC	6 cut(s)	202, 277, 373, 418, 1171, 1270
EciI	GGCGGA	1 cut(s)	528
Eco130I	CCWWGG	2 cut(s)	1245, 1281
Eco24I	GRGCYC	1 cut(s)	530
Eco31I	GGTCTC	2 cut(s)	587, 1234
Eco47I	GGWCC	2 cut(s)	607, 691
Eco57I	CTGAAG	1 cut(s)	593
Eco81I	CCTNAGG	1 cut(s)	744
EcoO109I	RGGNCCY	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	693
EcoT14I	CCWWGG	2 cut(s)	1245, 1281
EcoT38I	GRGCYC	1 cut(s)	530
ErhI	CCWWGG	2 cut(s)	1245, 1281
Esp3I	CGTCTC	2 cut(s)	109, 626
FaeI	CATG	3 cut(s)	333, 706, 1240
FatI	CATG	3 cut(s)	329, 702, 1236
FbaI	TGATCA	2 cut(s)	1171, 1270
Fnu4HI	GCNGC	7 cut(s)	64, 369, 396, 413, 556, 912, 1234
FokI	GGATG	1 cut(s)	920
FriOI	GRGCYC	1 cut(s)	530
Fsp4HI	GCNGC	7 cut(s)	64, 369, 396, 413, 556, 912, 1234
FspBI	CTAG	1 cut(s)	1302
GlaI	GCGC	3 cut(s)	405, 595, 725
GluI	GCNGC	7 cut(s)	64, 369, 396, 413, 556, 912, 1234
GsaI	CCCAGC	1 cut(s)	581
HaeIII	GGCC	3 cut(s)	436, 447, 701
HapII	CCGG	3 cut(s)	60, 416, 942
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	3 cut(s)	406, 596, 726
Hin1II	CATG	3 cut(s)	333, 706, 1240
Hin6I	GCGC	3 cut(s)	404, 594, 724
HinP1I	GCGC	3 cut(s)	404, 594, 724
HincII	GTYRAC	1 cut(s)	1195
HindII	GTYRAC	1 cut(s)	1195
HinfI	GANTC	3 cut(s)	4, 643, 1277
HpaII	CCGG	3 cut(s)	60, 416, 942
HphI	GGTGA	2 cut(s)	395, 492
Hpy166II	GTNNAC	1 cut(s)	1195
Hpy188I	TCNGA	3 cut(s)	224, 642, 648
Hpy188III	TCNNGA	7 cut(s)	200, 563, 584, 619, 743, 820, 1274
Hpy8I	GTNNAC	1 cut(s)	1195
Hpy99I	CGWCG	1 cut(s)	357
HpyAV	CCTTC	6 cut(s)	17, 510, 540, 622, 1039, 1060
HpyCH4III	ACNGT	2 cut(s)	209, 868
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	6 cut(s)	51, 547, 678, 783, 829, 1236
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 401, 412, 602, 670
HpyF3I	CTNAG	4 cut(s)	250, 744, 807, 1017
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	333, 706, 1240
HspAI	GCGC	3 cut(s)	404, 594, 724
Ksp22I	TGATCA	2 cut(s)	1171, 1270
Kzo9I	GATC	6 cut(s)	202, 277, 373, 418, 1171, 1270
Lsp1109I	GCAGC	5 cut(s)	75, 407, 567, 898, 1220
LweI	GCATC	3 cut(s)	711, 816, 898
MaeI	CTAG	1 cut(s)	1302
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	860, 944
MalI	GATC	6 cut(s)	204, 279, 375, 420, 1173, 1272
MboI	GATC	6 cut(s)	202, 277, 373, 418, 1171, 1270
MboII	GAAGA	9 cut(s)	162, 478, 525, 611, 634, 812, 835, 1022, 1147
MflI	RGATCY	2 cut(s)	277, 418
MhlI	GDGCHC	2 cut(s)	530, 1099
MluCI	AATT	9 cut(s)	147, 318, 482, 738, 898, 917, 1144, 1206, 1251
MmeI	TCCRAC	1 cut(s)	915
MseI	TTAA	3 cut(s)	1059, 1074, 1203
MslI	CAYNNNNRTG	1 cut(s)	764
MspI	CCGG	3 cut(s)	60, 416, 942
MspR9I	CCNGG	1 cut(s)	695
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	1 cut(s)	695
MvnI	CGCG	3 cut(s)	201, 596, 726
MwoI	GCNNNNNNNGC	5 cut(s)	72, 401, 412, 602, 670
NdeII	GATC	6 cut(s)	202, 277, 373, 418, 1171, 1270
NlaIII	CATG	3 cut(s)	333, 706, 1240
NlaIV	GGNNCC	2 cut(s)	420, 1098
NmeAIII	GCCGAG	2 cut(s)	92, 1134
NruI	TCGCGA	1 cut(s)	201
NspV	TTCGAA	1 cut(s)	798
OliI	CACNNNNGTG	1 cut(s)	764
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PctI	GAATGC	1 cut(s)	655
PfeI	GAWTC	3 cut(s)	4, 643, 1277
PfoI	TCCNGGA	1 cut(s)	693
PkrI	GCNGC	7 cut(s)	65, 370, 397, 414, 557, 913, 1235
Ple19I	CGATCG	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	693
PspFI	CCCAGC	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	2 cut(s)	420, 1098
PspPI	GGNCC	3 cut(s)	435, 607, 691
PsuI	RGATCY	2 cut(s)	277, 418
PvuI	CGATCG	1 cut(s)	376
RruI	TCGCGA	1 cut(s)	201
RsaI	GTAC	1 cut(s)	736
RsaNI	GTAC	1 cut(s)	735
RseI	CAYNNNNRTG	1 cut(s)	764
SaqAI	TTAA	3 cut(s)	1059, 1074, 1203
SatI	GCNGC	7 cut(s)	64, 369, 396, 413, 556, 912, 1234
Sau3AI	GATC	6 cut(s)	202, 277, 373, 418, 1171, 1270
Sau96I	GGNCC	3 cut(s)	435, 607, 691
ScrFI	CCNGG	1 cut(s)	695
SduI	GDGCHC	2 cut(s)	530, 1099
SfaNI	GCATC	3 cut(s)	711, 816, 898
SfuI	TTCGAA	1 cut(s)	798
SinI	GGWCC	2 cut(s)	607, 691
SmiMI	CAYNNNNRTG	1 cut(s)	764
SmlI	CTYRAG	2 cut(s)	124, 439
SmoI	CTYRAG	2 cut(s)	124, 439
Sse9I	AATT	9 cut(s)	147, 318, 482, 738, 898, 917, 1144, 1206, 1251
SsiI	CCGC	9 cut(s)	315, 366, 369, 381, 413, 539, 596, 605, 653
SspMI	CTAG	1 cut(s)	1302
StyD4I	CCNGG	1 cut(s)	693
StyI	CCWWGG	2 cut(s)	1245, 1281
TaaI	ACNGT	2 cut(s)	209, 868
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	7 cut(s)	272, 564, 585, 719, 798, 972, 1263
TaqII	GACCGA	1 cut(s)	158
TasI	AATT	9 cut(s)	147, 318, 482, 738, 898, 917, 1144, 1206, 1251
TauI	GCSGC	2 cut(s)	371, 415
TfiI	GAWTC	3 cut(s)	4, 643, 1277
Tru1I	TTAA	3 cut(s)	1059, 1074, 1203
Tru9I	TTAA	3 cut(s)	1059, 1074, 1203
TscAI	CASTG	2 cut(s)	766, 871
TseI	GCWGC	5 cut(s)	63, 395, 555, 911, 1233
TspDTI	ATGAA	2 cut(s)	641, 719
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	2 cut(s)	766, 871
VpaK11BI	GGWCC	2 cut(s)	607, 691
XapI	RAATTY	3 cut(s)	147, 917, 1251
XspI	CTAG	1 cut(s)	1302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.