Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012429

Physical Location & Seq

Genomic Coordinates Forward (+)

15941096 .. 15942676

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g12460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGCCATCGTTTCAGGGTCAGGTTTCCAAGCACATATTGTCCACCATTTCTAACCCTCTTCGCCAATCAACGAGCTTGTCGATGAAGCTACGTCGTTTTAGCACCACCGCCGATCGTGGCGGTGAAATGGAAGCACCACTGGAGCAACAGCCGCCGGAGCCCATACCCAATAGGCCCTTGAGAGGCCAAAGACCATCAAATCCTCAAACTTCCAATCTTCAGTTTCTCAACAAAAACTCGCCCATTTCAGAGAAAAGGAGAGAGAGGCCTTCTTCTCCGCCATTGCAGGACAGCAGCTTTCTCGAAAAGCTGAAGATGGGTCTCGACAAGTCGAAGAGGGAGGAGCCTCAGGAAGTTCCCGAGCCGCCACAGCCGCCCGAAGAAGCGGACCAGATATTCAAGAAGATGAAGGAGACTGGTCTCATTCCCAATGCCGTGGCAATGCTTGACGGGCTCTGCAAAGATGGGCTGGTCCAGGAGGCTATGAAGCTTTTCGGGTCGATGCGTGAAAAGGGCACGATTCCTGAGATTGTTATATACACTGCGGTGGTTGATGGGTTTTGCAAAGCACAGAAACTTGAAGATGCTAAGAGAATTTTCAGGAAGATGCAGAGCAATGGGATTGTTCCCAATGCTTTTAGTTACACTGTGTTGATACAGGGGTTGTATCGGGCTAATATGTTGGAGGATGCTGTTGAATTTTGTAGCGAAATGTTGGAAGCCGGTCACTCGCCCAATGTAACTACTTTTGTGGGGCTGATTGATATGGTTTGTAAGGAGAAGGATATGGAAGAAGCTGAGAGTGTTATTGGGAAGTTGAAGCAGAAGGGGTATTTGGTTAATGAGAAGGCTGTTAAAGAGTTTTTGGACAAGAAGGCACCATTTTCGCCGAGGATTTGGGAAGCTATCTTTGGGAAGAATAAATCGCAGAGACGTGTTGCCCCACTGTATGAGTGGCGGCATGAGAAGAACATAAATGTCACCCTTGGAAAATACTCTGTTAATAATGGTCACGATTCCTTGTGCTTTGTATGGTTTTCCAGGATCTTTAAGCATAAGCTTTTTTTATCATATTTTCTTACAGTTCACATTTGTCAATTCAATCATTCCGACAAAATCGAAAATGCTTATTGGCTCTTTGAAGAAAACATAGTTGAAAAGGCTAAGGAGGGGAGATGCTGGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

396

Amino Acids

45.17

Weight (kDa)

8.83

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38150 AT4G38150 AT4G38150
fragaria_vesca	FvH4_2g17180
malus_domestica	MD05G1145100.v1.1
prunus_persica	Prupe.8G183200_v2.0.a1
pyrus_communis	pycom05g14030 pycom07g10800 pycom10g12460
rosa_chinensis	RchiOBHm_Chr6g0281671
rosa_laevigata	RLG00000012952
rosa_multiflora	Rmu_co8238379.1_g000001 Rmu_sc0019758.1_g000001
rosa_rugosa	Rorug06G0142300
rosa_samantha	Rh6AG255000 Rh6BG258400 Rh6CG257200 Rh6DG249400
rosa_wichuraiana	Rw6G022130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	877
AciI	CCGC	9 cut(s)	108, 120, 152, 278, 365, 374, 386, 545, 958
AclWI	GGATC	1 cut(s)	1052
AcsI	RAATTY	2 cut(s)	594, 698
AcuI	CTGAAG	2 cut(s)	203, 332
AfiI	CCNNNNNNNGG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	934
AgsI	TTSAA	7 cut(s)	400, 581, 698, 820, 1102, 1142, 1157
AjiI	CACGTC	1 cut(s)	935
AjnI	CCWGG	2 cut(s)	474, 1040
AjuI	GAANNNNNNNTTGG	4 cut(s)	818, 850, 894, 926
AleI	CACNNNNGTG	1 cut(s)	545
AluBI	AGCT	8 cut(s)	75, 88, 297, 310, 490, 797, 905, 1060
AluI	AGCT	8 cut(s)	75, 88, 297, 310, 490, 797, 905, 1060
Alw26I	GTCTC	4 cut(s)	326, 407, 425, 925
AlwI	GGATC	1 cut(s)	1052
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	3 cut(s)	173, 184, 266
ApeKI	GCWGC	1 cut(s)	294
ApoI	RAATTY	2 cut(s)	594, 698
Asp700I	GAANNNNTTC	1 cut(s)	491
AspS9I	GGNCC	3 cut(s)	174, 388, 472
AsuHPI	GGTGA	2 cut(s)	134, 973
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	388, 472
AxyI	CCTNAGG	1 cut(s)	348
BaeGI	GKGCMC	1 cut(s)	518
BaeI	ACNNNNGTAYC	2 cut(s)	647, 680
BanI	GGYRCC	1 cut(s)	877
BanII	GRGCYC	2 cut(s)	162, 456
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	5 cut(s)	13, 202, 310, 458, 548
BceAI	ACGGC	1 cut(s)	419
BcgI	CGANNNNNNTGC	4 cut(s)	283, 317, 867, 901
BciT130I	CCWGG	2 cut(s)	476, 1042
BcoDI	GTCTC	4 cut(s)	326, 407, 425, 925
BfaI	CTAG	1 cut(s)	1186
BisI	GCNGC	5 cut(s)	152, 295, 365, 374, 959
BlsI	GCNGC	5 cut(s)	153, 296, 366, 375, 960
Bme1390I	CCNGG	2 cut(s)	476, 1042
Bme18I	GGWCC	2 cut(s)	388, 472
BmeT110I	CYCGRG	1 cut(s)	359
BmgBI	CACGTC	1 cut(s)	935
BmgT120I	GGNCC	3 cut(s)	174, 388, 472
BmiI	GGNNCC	3 cut(s)	159, 345, 879
BmrFI	CCNGG	2 cut(s)	476, 1042
BmsI	GCATC	5 cut(s)	492, 574, 597, 679, 1166
BpmI	CTGGAG	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	1164
BpuEI	CTTGAG	1 cut(s)	199
BsaI	GGTCTC	2 cut(s)	326, 425
BsaJI	CCNNGG	3 cut(s)	435, 890, 985
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse118I	RCCGGY	1 cut(s)	722
Bse1I	ACTGG	2 cut(s)	144, 421
Bse21I	CCTNAGG	1 cut(s)	348
Bse3DI	GCAATG	3 cut(s)	281, 447, 622
BseBI	CCWGG	2 cut(s)	476, 1042
BseDI	CCNNGG	3 cut(s)	435, 890, 985
BseGI	GGATG	1 cut(s)	694
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMI	GCAATG	3 cut(s)	281, 447, 622
BseMII	CTCAG	3 cut(s)	362, 516, 789
BseNI	ACTGG	2 cut(s)	144, 421
BseRI	GAGGAG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	518
BseXI	GCAGC	1 cut(s)	306
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	3 cut(s)	175, 186, 268
BshNI	GGYRCC	1 cut(s)	877
BsiEI	CGRYCG	1 cut(s)	115
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	155, 723
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	4 cut(s)	326, 407, 425, 925
BsmBI	CGTCTC	1 cut(s)	925
BsnI	GGCC	3 cut(s)	175, 186, 268
Bso31I	GGTCTC	2 cut(s)	326, 425
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	3 cut(s)	162, 456, 518
Bsp143I	GATC	2 cut(s)	112, 1044
BspACI	CCGC	9 cut(s)	108, 120, 152, 278, 365, 374, 386, 545, 958
BspANI	GGCC	3 cut(s)	175, 186, 268
BspCNI	CTCAG	3 cut(s)	361, 517, 790
BspLI	GGNNCC	3 cut(s)	159, 345, 879
BspPI	GGATC	1 cut(s)	1052
BspT107I	GGYRCC	1 cut(s)	877
BspTNI	GGTCTC	2 cut(s)	326, 425
BsrDI	GCAATG	3 cut(s)	281, 447, 622
BsrFI	RCCGGY	1 cut(s)	722
BsrI	ACTGG	2 cut(s)	144, 421
BssAI	RCCGGY	1 cut(s)	722
BssECI	CCNNGG	3 cut(s)	435, 890, 985
BssMI	GATC	2 cut(s)	112, 1044
BssT1I	CCWWGG	1 cut(s)	985
Bst2UI	CCWGG	2 cut(s)	476, 1042
Bst4CI	ACNGT	3 cut(s)	649, 948, 1084
Bst6I	CTCTTC	2 cut(s)	63, 329
BstDEI	CTNAG	5 cut(s)	348, 525, 588, 798, 1164
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	1 cut(s)	694
BstKTI	GATC	2 cut(s)	115, 1047
BstMAI	GTCTC	4 cut(s)	326, 407, 425, 925
BstMBI	GATC	2 cut(s)	112, 1044
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	5 cut(s)	151, 157, 370, 373, 451
BstNI	CCWGG	2 cut(s)	476, 1042
BstSCI	CCNGG	2 cut(s)	474, 1040
BstSLI	GKGCMC	1 cut(s)	518
BstV1I	GCAGC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	1044
BstXI	CCANNNNNNTGG	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	1044
Bsu36I	CCTNAGG	1 cut(s)	348
BsuRI	GGCC	3 cut(s)	175, 186, 268
BtgI	CCRYGG	1 cut(s)	435
BtrI	CACGTC	1 cut(s)	935
BtsCI	GGATG	1 cut(s)	694
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	4 cut(s)	137, 540, 645, 944
Cfr10I	RCCGGY	1 cut(s)	722
Cfr13I	GGNCC	3 cut(s)	174, 388, 472
CviAII	CATG	1 cut(s)	962
DdeI	CTNAG	5 cut(s)	348, 525, 588, 798, 1164
DpnI	GATC	2 cut(s)	114, 1046
DpnII	GATC	2 cut(s)	112, 1044
Eam1104I	CTCTTC	2 cut(s)	63, 329
EarI	CTCTTC	2 cut(s)	63, 329
EciI	GGCGGA	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	985
Eco147I	AGGCCT	1 cut(s)	268
Eco24I	GRGCYC	2 cut(s)	162, 456
Eco31I	GGTCTC	2 cut(s)	326, 425
Eco47I	GGWCC	2 cut(s)	388, 472
Eco57I	CTGAAG	2 cut(s)	203, 332
Eco81I	CCTNAGG	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	174
EcoRII	CCWGG	2 cut(s)	474, 1040
EcoT14I	CCWWGG	1 cut(s)	985
EcoT38I	GRGCYC	2 cut(s)	162, 456
ErhI	CCWWGG	1 cut(s)	985
Esp3I	CGTCTC	1 cut(s)	925
FaeI	CATG	1 cut(s)	965
FatI	CATG	1 cut(s)	961
Fnu4HI	GCNGC	5 cut(s)	152, 295, 365, 374, 959
FokI	GGATG	1 cut(s)	701
FriOI	GRGCYC	2 cut(s)	162, 456
Fsp4HI	GCNGC	5 cut(s)	152, 295, 365, 374, 959
FspBI	CTAG	1 cut(s)	1186
GluI	GCNGC	5 cut(s)	152, 295, 365, 374, 959
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	3 cut(s)	175, 186, 268
HapII	CCGG	2 cut(s)	155, 723
Hin1II	CATG	1 cut(s)	965
HindIII	AAGCTT	2 cut(s)	488, 1058
HinfI	GANTC	2 cut(s)	520, 1016
HpaII	CCGG	2 cut(s)	155, 723
HphI	GGTGA	2 cut(s)	134, 973
Hpy166II	GTNNAC	2 cut(s)	42, 1087
Hpy188I	TCNGA	2 cut(s)	250, 1111
Hpy188III	TCNNGA	8 cut(s)	302, 323, 350, 359, 400, 524, 601, 1013
Hpy8I	GTNNAC	2 cut(s)	42, 1087
Hpy99I	CGWCG	1 cut(s)	96
HpyAV	CCTTC	6 cut(s)	279, 403, 775, 820, 841, 868
HpyCH4III	ACNGT	3 cut(s)	649, 948, 1084
HpyCH4IV	ACGT	2 cut(s)	91, 934
HpyCH4V	TGCA	4 cut(s)	286, 459, 564, 610
HpyF10VI	GCNNNNNNNGC	5 cut(s)	151, 157, 370, 373, 451
HpyF3I	CTNAG	5 cut(s)	348, 525, 588, 798, 1164
HpySE526I	ACGT	2 cut(s)	91, 934
Hsp92II	CATG	1 cut(s)	965
Kzo9I	GATC	2 cut(s)	112, 1044
LmnI	GCTCC	3 cut(s)	142, 157, 343
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	5 cut(s)	492, 574, 597, 679, 1166
MaeI	CTAG	1 cut(s)	1186
MaeII	ACGT	2 cut(s)	91, 934
MaeIII	GTNAC	5 cut(s)	641, 725, 739, 979, 1010
MalI	GATC	2 cut(s)	114, 1046
MboI	GATC	2 cut(s)	112, 1044
MflI	RGATCY	1 cut(s)	1044
MhlI	GDGCHC	3 cut(s)	162, 456, 518
MluCI	AATT	3 cut(s)	594, 698, 1097
MmeI	TCCRAC	3 cut(s)	663, 696, 1134
MroXI	GAANNNNTTC	1 cut(s)	491
MseI	TTAA	4 cut(s)	840, 855, 1002, 1050
MslI	CAYNNNNRTG	1 cut(s)	545
MspI	CCGG	2 cut(s)	155, 723
MspR9I	CCNGG	2 cut(s)	476, 1042
MvaI	CCWGG	2 cut(s)	476, 1042
MwoI	GCNNNNNNNGC	5 cut(s)	151, 157, 370, 373, 451
NdeII	GATC	2 cut(s)	112, 1044
NlaIII	CATG	1 cut(s)	965
NlaIV	GGNNCC	3 cut(s)	159, 345, 879
NmeAIII	GCCGAG	1 cut(s)	915
NmuCI	GTSAC	3 cut(s)	725, 979, 1010
OliI	CACNNNNGTG	1 cut(s)	545
PceI	AGGCCT	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	520, 1016
PfoI	TCCNGGA	2 cut(s)	474, 1040
PkrI	GCNGC	5 cut(s)	153, 296, 366, 375, 960
Ple19I	CGATCG	1 cut(s)	115
Psp6I	CCWGG	2 cut(s)	474, 1040
PspGI	CCWGG	2 cut(s)	474, 1040
PspN4I	GGNNCC	3 cut(s)	159, 345, 879
PspPI	GGNCC	3 cut(s)	174, 388, 472
PsuI	RGATCY	1 cut(s)	1044
PvuI	CGATCG	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	545
SaqAI	TTAA	4 cut(s)	840, 855, 1002, 1050
SatI	GCNGC	5 cut(s)	152, 295, 365, 374, 959
Sau3AI	GATC	2 cut(s)	112, 1044
Sau96I	GGNCC	3 cut(s)	174, 388, 472
ScrFI	CCNGG	2 cut(s)	476, 1042
SduI	GDGCHC	3 cut(s)	162, 456, 518
SfaNI	GCATC	5 cut(s)	492, 574, 597, 679, 1166
SinI	GGWCC	2 cut(s)	388, 472
SmiMI	CAYNNNNRTG	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
Sse9I	AATT	3 cut(s)	594, 698, 1097
SseBI	AGGCCT	1 cut(s)	268
SsiI	CCGC	9 cut(s)	108, 120, 152, 278, 365, 374, 386, 545, 958
SspMI	CTAG	1 cut(s)	1186
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	2 cut(s)	474, 1040
StyI	CCWWGG	1 cut(s)	985
TaaI	ACNGT	3 cut(s)	649, 948, 1084
TaiI	ACGT	2 cut(s)	94, 937
TaqI	TCGA	6 cut(s)	80, 303, 324, 332, 500, 1119
TasI	AATT	3 cut(s)	594, 698, 1097
TauI	GCSGC	4 cut(s)	154, 367, 376, 961
TfiI	GAWTC	2 cut(s)	520, 1016
Tru1I	TTAA	4 cut(s)	840, 855, 1002, 1050
Tru9I	TTAA	4 cut(s)	840, 855, 1002, 1050
TscAI	CASTG	4 cut(s)	144, 547, 652, 951
TseFI	GTSAC	3 cut(s)	725, 979, 1010
TseI	GCWGC	1 cut(s)	294
Tsp45I	GTSAC	3 cut(s)	725, 979, 1010
TspDTI	ATGAA	3 cut(s)	98, 422, 500
TspRI	CASTG	4 cut(s)	144, 547, 652, 951
VpaK11BI	GGWCC	2 cut(s)	388, 472
XapI	RAATTY	2 cut(s)	594, 698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	951
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	1 cut(s)	1186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.