AT4G38460

Polyprenyl synthetase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
17994739 .. 17996222
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38460.1

Sequence Viewer

Length: 981 bp
ATGTTGTTTAGTGGTTCAGCGATCCCATTAAGCAGCTTCTGCTCTCTTCCGGAGAAACCCCACACTCTTCCTATGAAACTCTCTCCCGCTGCAATCCGATCTTCATCCTCATCTGCCCCGGGGTCGTTGAACTTCGATCTGAGGACGTATTGGACGACTCTGATCACCGAGATCAACCAGAAGCTGGATGAGGCCATACCGGTCAAGCACCCTGCGGGGATCTACGAGGCTATGAGATACTCTGTACTCGCACAAGGCGCCAAGCGTGCCCCTCCTGTGATGTGTGTGGCGGCCTGCGAGCTCTTCGGTGGCGATCGCCTCGCCGCTTTCCCCACCGCCTGTGCCCTAGAAATGGTGCACGCGGCTTCGTTGATACACGACGACCTCCCCTGTATGGACGACGATCCTGTGCGCAGAGGAAAGCCATCTAACCACACTGTCTACGGCTCTGGCATGGCCATTCTCGCCGGTGACGCCCTCTTCCCACTCGCCTTCCAGCACATTGTCTCCCACACGCCTCCTGACCTTGTTCCCCGAGCCACCATCCTCAGACTCATCACTGAGATTGCCCGCACTGTCGGCTCCACTGGTATGGCTGCAGGCCAGTACGTCGACCTTGAAGGAGGTCCCTTTCCTCTTTCCTTTGTTCAGGAGAAGAAATTCGGAGCCATGGGTGAATGCTCTGCCGTGTGCGGTGGCCTATTGGGCGGTGCCACTGAGGATGAGCTCCAGAGTCTCCGAAGGTACGGGAGAGCCGTCGGGATGCTGTATCAGGTGGTCGATGACATCACCGAGGACAAGAAGAAGAGCTATGATGGTGGAGCAGAGAAGGGAATGATGGAAATGGCGGAAGAGCTCAAGGAGAAGGCGAAGAAGGAGCTTCAAGTGTTTGACAACAAGTATGGAGGAGGAGACACACTTGTTCCTCTCTACACCTTCGTTGACTACGCTGCTCATCGACATTTTCTTCTTCCCCTCTGA

Protein Analysis

326

Amino Acids

35.19

Weight (kDa)

5.74

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
polyprenyl_synt PF00348 74 - 271 3.6e-33 Polyprenyl synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013148)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 413
AccB1I GGYRCC 2 cut(s) 257, 710
AccB7I CCANNNNNTGG 1 cut(s) 184
AccI GTMKAC 2 cut(s) 441, 612
AccII CGCG 1 cut(s) 362
AccIII TCCGGA 1 cut(s) 49
AclWI GGATC 3 cut(s) 16, 227, 398
AcoI YGGCCR 1 cut(s) 456
AcsI RAATTY 1 cut(s) 659
AcyI GRCGYC 2 cut(s) 258, 474
AfaI GTAC 3 cut(s) 246, 608, 746
AfiI CCNNNNNNNGG 3 cut(s) 184, 352, 394
AgeI ACCGGT 1 cut(s) 199
AgsI TTSAA 3 cut(s) 130, 620, 884
AluBI AGCT 7 cut(s) 36, 184, 301, 727, 810, 856, 880
AluI AGCT 7 cut(s) 36, 184, 301, 727, 810, 856, 880
Alw21I GWGCWC 4 cut(s) 303, 360, 729, 858
Alw26I GTCTC 3 cut(s) 511, 740, 906
Alw44I GTGCAC 1 cut(s) 356
AlwI GGATC 3 cut(s) 16, 227, 398
AlwNI CAGNNNCTG 2 cut(s) 39, 184
Ama87I CYCGRG 2 cut(s) 118, 534
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 5 cut(s) 192, 291, 456, 601, 697
ApaLI GTGCAC 1 cut(s) 356
ApeKI GCWGC 4 cut(s) 33, 89, 596, 950
ApoI RAATTY 1 cut(s) 659
AsiGI ACCGGT 1 cut(s) 199
AsiSI GCGATCGC 1 cut(s) 316
Asp700I GAANNNNTTC 1 cut(s) 659
AspLEI GCGC 2 cut(s) 260, 414
AspS9I GGNCC 1 cut(s) 626
AsuC2I CCSGG 2 cut(s) 119, 120
AsuHPI GGTGA 4 cut(s) 157, 482, 686, 781
AvaI CYCGRG 2 cut(s) 118, 534
AvaII GGWCC 1 cut(s) 626
BaeGI GKGCMC 3 cut(s) 271, 346, 360
BalI TGGCCA 1 cut(s) 458
BanI GGYRCC 2 cut(s) 257, 710
BanII GRGCYC 3 cut(s) 303, 729, 858
Bbv12I GWGCWC 4 cut(s) 303, 360, 729, 858
BbvI GCAGC 4 cut(s) 45, 76, 583, 937
BccI CCATC 4 cut(s) 433, 551, 809, 832
BceAI ACGGC 3 cut(s) 460, 671, 740
BclI TGATCA 1 cut(s) 162
BcnI CCSGG 2 cut(s) 119, 120
BcoDI GTCTC 3 cut(s) 511, 740, 906
BfaI CTAG 1 cut(s) 347
BfmI CTRYAG 1 cut(s) 597
BfoI RGCGCY 1 cut(s) 261
BglI GCCNNNNNGGC 1 cut(s) 705
BisI GCNGC 7 cut(s) 34, 90, 291, 324, 363, 597, 951
BlsI GCNGC 7 cut(s) 35, 91, 292, 325, 364, 598, 952
Bme1390I CCNGG 2 cut(s) 119, 120
Bme18I GGWCC 1 cut(s) 626
BmeT110I CYCGRG 2 cut(s) 118, 534
BmgT120I GGNCC 1 cut(s) 626
BmiI GGNNCC 5 cut(s) 259, 583, 628, 667, 712
BmrFI CCNGG 2 cut(s) 119, 120
BmsI GCATC 1 cut(s) 753
BpmI CTGGAG 1 cut(s) 713
BpuEI CTTGAG 1 cut(s) 842
BpuMI CCSGG 2 cut(s) 119, 120
BsaBI GATNNNNATC 1 cut(s) 103
BsaHI GRCGYC 2 cut(s) 258, 474
BsaJI CCNNGG 5 cut(s) 117, 118, 119, 669, 792
BsaWI WCCGGW 2 cut(s) 49, 199
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 352, 394
Bse118I RCCGGY 2 cut(s) 199, 467
Bse1I ACTGG 2 cut(s) 592, 604
Bse8I GATNNNNATC 1 cut(s) 103
BseAI TCCGGA 1 cut(s) 49
BseDI CCNNGG 5 cut(s) 117, 118, 119, 669, 792
BseGI GGATG 5 cut(s) 104, 193, 543, 727, 768
BseJI GATNNNNATC 1 cut(s) 103
BseLI CCNNNNNNNGG 3 cut(s) 184, 352, 394
BseMII CTCAG 4 cut(s) 131, 552, 562, 708
BseNI ACTGG 2 cut(s) 592, 604
BseRI GAGGAG 2 cut(s) 921, 924
BseSI GKGCMC 3 cut(s) 271, 346, 360
BseXI GCAGC 4 cut(s) 45, 76, 583, 937
Bsh1236I CGCG 1 cut(s) 362
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 5 cut(s) 194, 293, 458, 603, 699
BshNI GGYRCC 2 cut(s) 257, 710
BshTI ACCGGT 1 cut(s) 199
BsiEI CGRYCG 1 cut(s) 316
BsiHKAI GWGCWC 4 cut(s) 303, 360, 729, 858
BsiHKCI CYCGRG 2 cut(s) 118, 534
BsiSI CCGG 4 cut(s) 50, 119, 200, 468
BslFI GGGAC 1 cut(s) 612
BslI CCNNNNNNNGG 3 cut(s) 184, 352, 394
BsmAI GTCTC 3 cut(s) 511, 740, 906
BsmFI GGGAC 1 cut(s) 612
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 5 cut(s) 194, 293, 458, 603, 699
BsoBI CYCGRG 2 cut(s) 118, 534
Bsp1286I GDGCHC 6 cut(s) 271, 303, 346, 360, 729, 858
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 8 cut(s) 21, 98, 136, 162, 171, 219, 313, 403
Bsp19I CCATGG 1 cut(s) 669
BspANI GGCC 5 cut(s) 194, 293, 458, 603, 699
BspCNI CTCAG 4 cut(s) 132, 553, 561, 709
BspEI TCCGGA 1 cut(s) 49
BspFNI CGCG 1 cut(s) 362
BspLI GGNNCC 5 cut(s) 259, 583, 628, 667, 712
BspMAI CTGCAG 1 cut(s) 601
BspPI GGATC 3 cut(s) 16, 227, 398
BspQI GCTCTTC 3 cut(s) 308, 800, 846
BspT107I GGYRCC 2 cut(s) 257, 710
BsrFI RCCGGY 2 cut(s) 199, 467
BsrI ACTGG 2 cut(s) 592, 604
BssAI RCCGGY 2 cut(s) 199, 467
BssECI CCNNGG 5 cut(s) 117, 118, 119, 669, 792
BssMI GATC 8 cut(s) 21, 98, 136, 162, 171, 219, 313, 403
BssNI GRCGYC 2 cut(s) 258, 474
BssT1I CCWWGG 1 cut(s) 669
Bst4CI ACNGT 2 cut(s) 439, 577
Bst6I CTCTTC 6 cut(s) 51, 72, 308, 485, 800, 846
BstACI GRCGYC 2 cut(s) 258, 474
BstAPI GCANNNNNTGC 1 cut(s) 39
BstC8I GCNNGC 6 cut(s) 267, 295, 299, 360, 571, 601
BstDEI CTNAG 4 cut(s) 140, 548, 561, 717
BstDSI CCRYGG 1 cut(s) 669
BstF5I GGATG 5 cut(s) 104, 193, 543, 727, 768
BstFNI CGCG 1 cut(s) 362
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 2 cut(s) 260, 414
BstKTI GATC 8 cut(s) 24, 101, 139, 165, 174, 222, 316, 406
BstMAI GTCTC 3 cut(s) 511, 740, 906
BstMBI GATC 8 cut(s) 21, 98, 136, 162, 171, 219, 313, 403
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 7 cut(s) 39, 257, 266, 464, 473, 579, 705
BstSCI CCNGG 2 cut(s) 117, 118
BstSFI CTRYAG 1 cut(s) 597
BstSLI GKGCMC 3 cut(s) 271, 346, 360
BstUI CGCG 1 cut(s) 362
BstV1I GCAGC 4 cut(s) 45, 76, 583, 937
BstX2I RGATCY 1 cut(s) 219
BstXI CCANNNNNNTGG 1 cut(s) 592
BstYI RGATCY 1 cut(s) 219
BsuRI GGCC 5 cut(s) 194, 293, 458, 603, 699
BtgI CCRYGG 1 cut(s) 669
BtsCI GGATG 5 cut(s) 104, 193, 543, 727, 768
BtsIMutI CAGTG 5 cut(s) 435, 558, 573, 585, 714
Cac8I GCNNGC 6 cut(s) 267, 295, 299, 360, 571, 601
CaiI CAGNNNCTG 2 cut(s) 39, 184
CfoI GCGC 2 cut(s) 260, 414
Cfr10I RCCGGY 2 cut(s) 199, 467
Cfr13I GGNCC 1 cut(s) 626
Cfr9I CCCGGG 1 cut(s) 118
CseI GACGC 1 cut(s) 482
Csp6I GTAC 3 cut(s) 245, 607, 745
CspAI ACCGGT 1 cut(s) 199
CviAII CATG 2 cut(s) 454, 670
CviQI GTAC 3 cut(s) 245, 607, 745
DdeI CTNAG 4 cut(s) 140, 548, 561, 717
DinI GGCGCC 1 cut(s) 259
DpnI GATC 8 cut(s) 23, 100, 138, 164, 173, 221, 315, 405
DpnII GATC 8 cut(s) 21, 98, 136, 162, 171, 219, 313, 403
EaeI YGGCCR 1 cut(s) 456
Eam1104I CTCTTC 6 cut(s) 51, 72, 308, 485, 800, 846
EarI CTCTTC 6 cut(s) 51, 72, 308, 485, 800, 846
EciI GGCGGA 1 cut(s) 863
Ecl136II GAGCTC 3 cut(s) 301, 727, 856
Eco130I CCWWGG 1 cut(s) 669
Eco24I GRGCYC 3 cut(s) 303, 729, 858
Eco47I GGWCC 1 cut(s) 626
Eco53kI GAGCTC 3 cut(s) 301, 727, 856
Eco88I CYCGRG 2 cut(s) 118, 534
EcoICRI GAGCTC 3 cut(s) 301, 727, 856
EcoO109I RGGNCCY 1 cut(s) 626
EcoT14I CCWWGG 1 cut(s) 669
EcoT38I GRGCYC 3 cut(s) 303, 729, 858
EgeI GGCGCC 1 cut(s) 259
EheI GGCGCC 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 2 cut(s) 457, 673
FaiI YATR 9 cut(s) 74, 197, 233, 395, 455, 593, 671, 813, 903
FaqI GGGAC 1 cut(s) 612
FatI CATG 2 cut(s) 453, 669
FauI CCCGC 3 cut(s) 94, 208, 578
FbaI TGATCA 1 cut(s) 162
FblI GTMKAC 2 cut(s) 441, 612
Fnu4HI GCNGC 7 cut(s) 34, 90, 291, 324, 363, 597, 951
FokI GGATG 5 cut(s) 91, 200, 530, 734, 775
FriOI GRGCYC 3 cut(s) 303, 729, 858
Fsp4HI GCNGC 7 cut(s) 34, 90, 291, 324, 363, 597, 951
FspBI CTAG 1 cut(s) 347
FspI TGCGCA 1 cut(s) 413
GlaI GCGC 2 cut(s) 259, 413
GluI GCNGC 7 cut(s) 34, 90, 291, 324, 363, 597, 951
GsuI CTGGAG 1 cut(s) 713
HaeII RGCGCY 1 cut(s) 261
HaeIII GGCC 5 cut(s) 194, 293, 458, 603, 699
HapII CCGG 4 cut(s) 50, 119, 200, 468
HgaI GACGC 1 cut(s) 482
HhaI GCGC 2 cut(s) 260, 414
Hin1I GRCGYC 2 cut(s) 258, 474
Hin1II CATG 2 cut(s) 457, 673
Hin6I GCGC 2 cut(s) 258, 412
HinP1I GCGC 2 cut(s) 258, 412
HincII GTYRAC 2 cut(s) 613, 943
HindII GTYRAC 2 cut(s) 613, 943
HinfI GANTC 3 cut(s) 157, 552, 733
HpaII CCGG 4 cut(s) 50, 119, 200, 468
HphI GGTGA 4 cut(s) 157, 482, 686, 781
Hpy166II GTNNAC 4 cut(s) 358, 442, 613, 943
Hpy188I TCNGA 7 cut(s) 98, 141, 162, 551, 665, 740, 980
Hpy188III TCNNGA 5 cut(s) 50, 521, 650, 730, 760
Hpy8I GTNNAC 4 cut(s) 358, 442, 613, 943
Hpy99I CGWCG 4 cut(s) 383, 404, 614, 761
HpyAV CCTTC 7 cut(s) 502, 614, 735, 823, 859, 868, 946
HpyCH4III ACNGT 2 cut(s) 439, 577
HpyCH4IV ACGT 2 cut(s) 146, 609
HpyCH4V TGCA 3 cut(s) 92, 358, 599
HpyF10VI GCNNNNNNNGC 7 cut(s) 39, 257, 266, 464, 473, 579, 705
HpyF3I CTNAG 4 cut(s) 140, 548, 561, 717
HpySE526I ACGT 2 cut(s) 146, 609
Hsp92I GRCGYC 2 cut(s) 258, 474
Hsp92II CATG 2 cut(s) 457, 673
HspAI GCGC 2 cut(s) 258, 412
KasI GGCGCC 1 cut(s) 257
Kpn2I TCCGGA 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 8 cut(s) 21, 98, 136, 162, 171, 219, 313, 403
LguI GCTCTTC 3 cut(s) 308, 800, 846
LmnI GCTCC 5 cut(s) 587, 665, 732, 821, 877
Lsp1109I GCAGC 4 cut(s) 45, 76, 583, 937
LweI GCATC 1 cut(s) 753
MaeI CTAG 1 cut(s) 347
MaeII ACGT 2 cut(s) 146, 609
MaeIII GTNAC 1 cut(s) 470
MalI GATC 8 cut(s) 23, 100, 138, 164, 173, 221, 315, 405
MboI GATC 8 cut(s) 21, 98, 136, 162, 171, 219, 313, 403
MflI RGATCY 1 cut(s) 219
MhlI GDGCHC 6 cut(s) 271, 303, 346, 360, 729, 858
MlsI TGGCCA 1 cut(s) 458
MluCI AATT 1 cut(s) 659
MluNI TGGCCA 1 cut(s) 458
Mly113I GGCGCC 1 cut(s) 258
MlyI GAGTC 3 cut(s) 151, 546, 742
Mox20I TGGCCA 1 cut(s) 458
MroI TCCGGA 1 cut(s) 49
MroXI GAANNNNTTC 1 cut(s) 659
MscI TGGCCA 1 cut(s) 458
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 590
Msp20I TGGCCA 1 cut(s) 458
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 4 cut(s) 50, 119, 200, 468
MspR9I CCNGG 2 cut(s) 119, 120
Mva1269I GAATGC 1 cut(s) 683
MvnI CGCG 1 cut(s) 362
MwoI GCNNNNNNNGC 7 cut(s) 39, 257, 266, 464, 473, 579, 705
NarI GGCGCC 1 cut(s) 258
NciI CCSGG 2 cut(s) 119, 120
NcoI CCATGG 1 cut(s) 669
NdeII GATC 8 cut(s) 21, 98, 136, 162, 171, 219, 313, 403
NlaIII CATG 2 cut(s) 457, 673
NlaIV GGNNCC 5 cut(s) 259, 583, 628, 667, 712
NmuCI GTSAC 1 cut(s) 470
NsbI TGCGCA 1 cut(s) 413
PciSI GCTCTTC 3 cut(s) 308, 800, 846
PcsI WCGNNNNNNNCGW 2 cut(s) 152, 753
PctI GAATGC 1 cut(s) 683
PdmI GAANNNNTTC 1 cut(s) 659
PflMI CCANNNNNTGG 1 cut(s) 184
PinAI ACCGGT 1 cut(s) 199
PkrI GCNGC 7 cut(s) 35, 91, 292, 325, 364, 598, 952
Ple19I CGATCG 1 cut(s) 316
PleI GAGTC 3 cut(s) 151, 546, 741
PluTI GGCGCC 1 cut(s) 261
PpsI GAGTC 3 cut(s) 151, 546, 741
PpuMI RGGWCCY 1 cut(s) 626
Psp124BI GAGCTC 3 cut(s) 303, 729, 858
Psp5II RGGWCCY 1 cut(s) 626
PspN4I GGNNCC 5 cut(s) 259, 583, 628, 667, 712
PspPI GGNCC 1 cut(s) 626
PspPPI RGGWCCY 1 cut(s) 626
PstI CTGCAG 1 cut(s) 601
PstNI CAGNNNCTG 2 cut(s) 39, 184
PsuI RGATCY 1 cut(s) 219
PvuI CGATCG 1 cut(s) 316
RgaI GCGATCGC 1 cut(s) 316
RsaI GTAC 3 cut(s) 246, 608, 746
RsaNI GTAC 3 cut(s) 245, 607, 745
RseI CAYNNNNRTG 1 cut(s) 590
SacI GAGCTC 3 cut(s) 303, 729, 858
SalI GTCGAC 1 cut(s) 611
SapI GCTCTTC 3 cut(s) 308, 800, 846
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 7 cut(s) 34, 90, 291, 324, 363, 597, 951
Sau3AI GATC 8 cut(s) 21, 98, 136, 162, 171, 219, 313, 403
Sau96I GGNCC 1 cut(s) 626
SchI GAGTC 3 cut(s) 151, 546, 742
ScrFI CCNGG 2 cut(s) 119, 120
SduI GDGCHC 6 cut(s) 271, 303, 346, 360, 729, 858
SfaAI GCGATCGC 1 cut(s) 316
SfaNI GCATC 1 cut(s) 753
SfcI CTRYAG 1 cut(s) 597
SfoI GGCGCC 1 cut(s) 259
SgfI GCGATCGC 1 cut(s) 316
SgrAI CRCCGGYG 1 cut(s) 467
SinI GGWCC 1 cut(s) 626
SmaI CCCGGG 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 590
SmlI CTYRAG 1 cut(s) 857
SmoI CTYRAG 1 cut(s) 857
Sse9I AATT 1 cut(s) 659
SspDI GGCGCC 1 cut(s) 257
SspMI CTAG 1 cut(s) 347
SstI GAGCTC 3 cut(s) 303, 729, 858
StyD4I CCNGG 2 cut(s) 117, 118
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 2 cut(s) 439, 577
TaiI ACGT 2 cut(s) 149, 612
TaqI TCGA 4 cut(s) 135, 612, 780, 958
TasI AATT 1 cut(s) 659
TatI WGTACW 1 cut(s) 244
TauI GCSGC 3 cut(s) 293, 326, 365
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 5 cut(s) 442, 565, 580, 592, 721
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 4 cut(s) 33, 89, 596, 950
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 2 cut(s) 89, 93
TspMI CCCGGG 1 cut(s) 118
TspRI CASTG 5 cut(s) 442, 565, 580, 592, 721
Van91I CCANNNNNTGG 1 cut(s) 184
VneI GTGCAC 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 626
XapI RAATTY 1 cut(s) 659
XmaI CCCGGG 1 cut(s) 118
XmiI GTMKAC 2 cut(s) 441, 612
XmnI GAANNNNTTC 1 cut(s) 659
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.