Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013148

Physical Location & Seq

Genomic Coordinates Forward (+)

17126957 .. 17128836

Gene Structure 1880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0123500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAAAGTTCAGTTTCAATATCACTTGGTTTGATCATAGGCATCTCGGCGGGTGTTTTTGGGACCATTGTACTAATTGTTTGCGGTATATCAAGGAAGAGAATATTGGTCTTGTTCAAGAAAGATGAAAGGGATGAATTTGATATCGAGGCATTTATAAAAAATCATGGATCCCTGAGTCCAATGCGGTACCATTATTCAGATTTGAAGAAAATGACAAACTCATTCAAAGATCAGATTGGTAAAGGTGGATATGGCACAATATACAAAGGAAAGCTACTCAATGGCCTTGTGGTGGCAGTGAAAGTCCTAAGTGAATCGAAGGGTAATGGAGAAGATTTTATCAATGAAGTTGCTAGCATTGGTAGAACTTCTCATGTCAATATAGTGACTCTTCTGGGATTATGCTATGAAGGGGAGAAAAGAGCTCTCATATACAAGTACATGACTAATGGATCGTTGGATAAATTCATACATTATAAGCAAGGCTCTTCAGATGAAAGTTGCCGCTTGGAATGGAAAACATTATCTGAAATTGCAGTTGGCATTGCTCGTGGACTAGAATACTTGCATCGTGGTTTATTGTATCGATATATGCTAGGGACAAGAGGAACTGCAGGATACATTGCACCGGAAGTGTTTAGTCGGAACTTTGGAGGAGCATCTCATAAGTCTGATGTTTATAGCTATGGGATGCTAGTTCTTGAAATGGTTGGTGCAAGAAAGAATTTGGATTCAGAAGTGTCTCATAGCAATGAAATGTTTCCACATTACATATATAAAGATCTAGAGCTAGAGAAGAATGAGATTATATTTGGGGAAATAACAGAGGACGAGAGCAAAATAGCAAGAAAGATGATATTGATAAGTCTTACGTGCATTCAGACCCTTCCATCTGATCGACCATCAATGAGCAAAGTGGTAGAGATGTTGGAAGGACCCCTTCATTCCTTGCCAATTCCACCAAAGCCCTTCTTATTTTCTGAAGAAGAATCTCCACCCATGTCCCAACCATCTAAAACAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034357 GO:0042214 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046246 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

342

Amino Acids

38.12

Weight (kDa)

7.12

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	76 - 192	3.4e-21	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	77 - 192	2.1e-16	Protein kinase domain
Pkinase	PF00069	203 - 309	2.5e-07	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	205 - 311	8.2e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38460
fragaria_vesca	FvH4_2g15810
malus_domestica	MD05G1127100.v1.1 MD12G1092700.v1.1
prunus_persica	Prupe.8G170800_v2.0.a1
pyrus_communis	pycom05g12290 pycom10g11180
rosa_chinensis	RchiOBHm_Chr6g0279181
rosa_laevigata	RLG00000013157
rosa_multiflora	Rmu_sc0014203.1_g000011 Rmu_sc0014536.1_g000006
rosa_roxburghii	Rroxscaffold_7G00189050
rosa_rugosa	Rorug06G0123500
rosa_samantha	Rh6AG231800 Rh6BG236700 Rh6CG238600 Rh6DG230200
rosa_wichuraiana	Rw6G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	158, 480
Acc65I	GGTACC	1 cut(s)	189
AccB1I	GGYRCC	1 cut(s)	189
AciI	CCGC	4 cut(s)	50, 84, 187, 508
AclWI	GGATC	3 cut(s)	165, 178, 463
AcsI	RAATTY	3 cut(s)	137, 467, 727
AcuI	CTGAAG	2 cut(s)	477, 1005
AfaI	GTAC	3 cut(s)	72, 191, 443
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	5 cut(s)	18, 118, 208, 229, 707
AjuI	GAANNNNNNNTTGG	4 cut(s)	89, 121, 525, 557
AluBI	AGCT	4 cut(s)	277, 428, 687, 793
AluI	AGCT	4 cut(s)	277, 428, 687, 793
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	1 cut(s)	750
AlwI	GGATC	3 cut(s)	165, 178, 463
AoxI	GGCC	1 cut(s)	286
ApoI	RAATTY	3 cut(s)	137, 467, 727
Asp700I	GAANNNNTTC	1 cut(s)	762
Asp718I	GGTACC	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	63, 938
AsuNHI	GCTAGC	1 cut(s)	356
AvaII	GGWCC	2 cut(s)	63, 938
BamHI	GGATCC	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	430
BauI	CACGAG	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	430
BccI	CCATC	3 cut(s)	901, 913, 1021
BciVI	GTATCC	1 cut(s)	614
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	750
BfaI	CTAG	6 cut(s)	357, 560, 599, 698, 788, 794
BfmI	CTRYAG	1 cut(s)	615
BfuI	GTATCC	1 cut(s)	614
BglII	AGATCT	1 cut(s)	784
BisI	GCNGC	1 cut(s)	508
BlsI	GCNGC	1 cut(s)	509
Bme18I	GGWCC	2 cut(s)	63, 938
BmgT120I	GGNCC	2 cut(s)	63, 938
BmiI	GGNNCC	4 cut(s)	64, 172, 191, 940
BmsI	GCATC	4 cut(s)	51, 580, 671, 684
BmtI	GCTAGC	1 cut(s)	360
Bsa29I	ATCGAT	1 cut(s)	589
BsaAI	YACGTR	1 cut(s)	876
BsaWI	WCCGGW	1 cut(s)	631
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse3DI	GCAATG	3 cut(s)	546, 624, 760
BseCI	ATCGAT	1 cut(s)	589
BseGI	GGATG	2 cut(s)	139, 699
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	3 cut(s)	546, 624, 760
BseMII	CTCAG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	672
BshFI	GGCC	1 cut(s)	288
BshNI	GGYRCC	1 cut(s)	189
BshVI	ATCGAT	1 cut(s)	589
BsiHKAI	GWGCWC	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	632
BslFI	GGGAC	3 cut(s)	76, 616, 991
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	750
BsmFI	GGGAC	3 cut(s)	76, 616, 991
BsmI	GAATGC	1 cut(s)	879
BsnI	GGCC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp143I	GATC	6 cut(s)	33, 170, 232, 455, 784, 898
BspACI	CCGC	4 cut(s)	50, 84, 187, 508
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	168
BspDI	ATCGAT	1 cut(s)	589
BspLI	GGNNCC	4 cut(s)	64, 172, 191, 940
BspMAI	CTGCAG	1 cut(s)	619
BspOI	GCTAGC	1 cut(s)	360
BspPI	GGATC	3 cut(s)	165, 178, 463
BspQI	GCTCTTC	1 cut(s)	496
BspT107I	GGYRCC	1 cut(s)	189
BsrDI	GCAATG	3 cut(s)	546, 624, 760
BssMI	GATC	6 cut(s)	33, 170, 232, 455, 784, 898
BssSI	CACGAG	1 cut(s)	552
Bst2BI	CACGAG	1 cut(s)	552
Bst6I	CTCTTC	3 cut(s)	92, 399, 496
BstBAI	YACGTR	1 cut(s)	876
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	2 cut(s)	176, 311
BstF5I	GGATG	2 cut(s)	139, 699
BstKTI	GATC	6 cut(s)	36, 173, 235, 458, 787, 901
BstMAI	GTCTC	1 cut(s)	750
BstMBI	GATC	6 cut(s)	33, 170, 232, 455, 784, 898
BstSFI	CTRYAG	1 cut(s)	615
BstX2I	RGATCY	2 cut(s)	170, 784
BstYI	RGATCY	2 cut(s)	170, 784
Bsu15I	ATCGAT	1 cut(s)	589
BsuI	GTATCC	1 cut(s)	614
BsuRI	GGCC	1 cut(s)	288
BsuTUI	ATCGAT	1 cut(s)	589
BtsCI	GGATG	2 cut(s)	139, 699
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	358
Cfr13I	GGNCC	2 cut(s)	63, 938
ClaI	ATCGAT	1 cut(s)	589
Csp6I	GTAC	3 cut(s)	71, 190, 442
CviAII	CATG	4 cut(s)	167, 377, 445, 1003
CviJI	RGCY	8 cut(s)	277, 288, 428, 489, 687, 793, 970, 1026
CviKI_1	RGCY	8 cut(s)	277, 288, 428, 489, 687, 793, 970, 1026
CviQI	GTAC	3 cut(s)	71, 190, 442
DdeI	CTNAG	2 cut(s)	176, 311
DpnI	GATC	6 cut(s)	35, 172, 234, 457, 786, 900
DpnII	GATC	6 cut(s)	33, 170, 232, 455, 784, 898
Eam1104I	CTCTTC	3 cut(s)	92, 399, 496
EarI	CTCTTC	3 cut(s)	92, 399, 496
Ecl136II	GAGCTC	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	430
Eco32I	GATATC	1 cut(s)	145
Eco47I	GGWCC	2 cut(s)	63, 938
Eco53kI	GAGCTC	1 cut(s)	428
Eco57I	CTGAAG	2 cut(s)	477, 1005
EcoICRI	GAGCTC	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	938
EcoRV	GATATC	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	430
FaeI	CATG	4 cut(s)	170, 380, 448, 1006
FalI	AAGNNNNNCTT	4 cut(s)	927, 959, 959, 991
FaqI	GGGAC	3 cut(s)	76, 616, 991
FatI	CATG	4 cut(s)	166, 376, 444, 1002
FauI	CCCGC	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	508
FokI	GGATG	2 cut(s)	146, 706
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	1 cut(s)	508
FspBI	CTAG	6 cut(s)	357, 560, 599, 698, 788, 794
GluI	GCNGC	1 cut(s)	508
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	632
Hin1II	CATG	4 cut(s)	170, 380, 448, 1006
HinfI	GANTC	5 cut(s)	178, 317, 391, 734, 992
HpaII	CCGG	1 cut(s)	632
Hpy166II	GTNNAC	1 cut(s)	557
Hpy188III	TCNNGA	3 cut(s)	118, 704, 788
Hpy8I	GTNNAC	1 cut(s)	557
HpyAV	CCTTC	6 cut(s)	316, 407, 899, 929, 953, 982
HpyCH4IV	ACGT	1 cut(s)	875
HpyCH4V	TGCA	6 cut(s)	539, 571, 617, 629, 719, 879
HpyF3I	CTNAG	2 cut(s)	176, 311
HpySE526I	ACGT	1 cut(s)	875
Hsp92II	CATG	4 cut(s)	170, 380, 448, 1006
KpnI	GGTACC	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	6 cut(s)	33, 170, 232, 455, 784, 898
LguI	GCTCTTC	1 cut(s)	496
LmnI	GCTCC	1 cut(s)	659
LpnPI	CCDG	5 cut(s)	188, 383, 603, 645, 1008
LweI	GCATC	4 cut(s)	51, 580, 671, 684
MaeI	CTAG	6 cut(s)	357, 560, 599, 698, 788, 794
MaeII	ACGT	1 cut(s)	875
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	6 cut(s)	35, 172, 234, 457, 786, 900
MboI	GATC	6 cut(s)	33, 170, 232, 455, 784, 898
MboII	GAAGA	8 cut(s)	109, 220, 347, 386, 483, 811, 998, 1001
MflI	RGATCY	2 cut(s)	170, 784
MhlI	GDGCHC	1 cut(s)	430
MluCI	AATT	6 cut(s)	75, 137, 467, 534, 727, 957
MlyI	GAGTC	2 cut(s)	187, 385
MmeI	TCCRAC	3 cut(s)	441, 626, 912
MnlI	CCTC	4 cut(s)	142, 602, 650, 823
MroXI	GAANNNNTTC	1 cut(s)	762
MslI	CAYNNNNRTG	1 cut(s)	753
MspI	CCGG	1 cut(s)	632
Mva1269I	GAATGC	1 cut(s)	879
NdeII	GATC	6 cut(s)	33, 170, 232, 455, 784, 898
NheI	GCTAGC	1 cut(s)	356
NlaIII	CATG	4 cut(s)	170, 380, 448, 1006
NlaIV	GGNNCC	4 cut(s)	64, 172, 191, 940
NmeAIII	GCCGAG	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	496
PctI	GAATGC	1 cut(s)	879
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	3 cut(s)	317, 734, 992
PkrI	GCNGC	1 cut(s)	509
PleI	GAGTC	2 cut(s)	186, 385
PpsI	GAGTC	2 cut(s)	186, 385
Ppu21I	YACGTR	1 cut(s)	876
PpuMI	RGGWCCY	1 cut(s)	938
PsiI	TTATAA	2 cut(s)	158, 480
Psp124BI	GAGCTC	1 cut(s)	430
Psp5II	RGGWCCY	1 cut(s)	938
PspN4I	GGNNCC	4 cut(s)	64, 172, 191, 940
PspPI	GGNCC	2 cut(s)	63, 938
PspPPI	RGGWCCY	1 cut(s)	938
PstI	CTGCAG	1 cut(s)	619
PsuI	RGATCY	2 cut(s)	170, 784
RsaI	GTAC	3 cut(s)	72, 191, 443
RsaNI	GTAC	3 cut(s)	71, 190, 442
RseI	CAYNNNNRTG	1 cut(s)	753
SacI	GAGCTC	1 cut(s)	430
SapI	GCTCTTC	1 cut(s)	496
SatI	GCNGC	1 cut(s)	508
Sau3AI	GATC	6 cut(s)	33, 170, 232, 455, 784, 898
Sau96I	GGNCC	2 cut(s)	63, 938
SchI	GAGTC	2 cut(s)	187, 385
SduI	GDGCHC	1 cut(s)	430
SetI	ASST	6 cut(s)	250, 279, 430, 689, 795, 878
SfaNI	GCATC	4 cut(s)	51, 580, 671, 684
SfcI	CTRYAG	1 cut(s)	615
SinI	GGWCC	2 cut(s)	63, 938
SmiMI	CAYNNNNRTG	1 cut(s)	753
Sse9I	AATT	6 cut(s)	75, 137, 467, 534, 727, 957
SsiI	CCGC	4 cut(s)	50, 84, 187, 508
SspI	AATATT	1 cut(s)	105
SspMI	CTAG	6 cut(s)	357, 560, 599, 698, 788, 794
SstI	GAGCTC	1 cut(s)	430
TaiI	ACGT	1 cut(s)	878
TaqI	TCGA	4 cut(s)	147, 320, 589, 901
TasI	AATT	6 cut(s)	75, 137, 467, 534, 727, 957
TatI	WGTACW	2 cut(s)	70, 441
TauI	GCSGC	1 cut(s)	510
TfiI	GAWTC	3 cut(s)	317, 734, 992
TscAI	CASTG	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	8 cut(s)	141, 150, 363, 426, 460, 513, 771, 935
TspRI	CASTG	1 cut(s)	306
VpaK11BI	GGWCC	2 cut(s)	63, 938
XapI	RAATTY	3 cut(s)	137, 467, 727
XbaI	TCTAGA	1 cut(s)	787
XmnI	GAANNNNTTC	1 cut(s)	762
XspI	CTAG	6 cut(s)	357, 560, 599, 698, 788, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.